Wall clock time and date at job start Sun Mar 29 2020 22:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 120.00267 * 2 1 4 4 C 1.50701 * 109.46923 * 269.99638 * 3 2 1 5 5 H 1.08001 * 120.00066 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99624 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00481 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99751 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47103 * 90.00179 * 8 6 4 10 10 H 1.48506 * 109.47148 * 210.00321 * 8 6 4 11 11 H 1.48497 * 109.46995 * 330.00172 * 8 6 4 12 12 C 1.34779 * 119.99663 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00103 * 184.21308 * 12 2 1 14 14 C 1.50701 * 120.00097 * 4.22366 * 12 2 1 15 15 H 1.08998 * 109.73331 * 331.63963 * 14 12 2 16 16 C 1.53352 * 109.60118 * 211.23554 * 14 12 2 17 17 C 1.53070 * 108.45312 * 172.72914 * 16 14 12 18 18 C 1.50173 * 109.89358 * 48.87918 * 17 16 14 19 19 O 1.21282 * 118.24681 * 162.39632 * 18 17 16 20 20 N 1.33360 * 123.50842 * 342.41922 * 18 17 16 21 21 C 1.45754 * 124.10410 * 2.19917 * 20 18 17 22 22 H 1.09005 * 109.47413 * 264.98651 * 1 2 3 23 23 H 1.09000 * 109.46831 * 24.98388 * 1 2 3 24 24 H 1.09000 * 109.47631 * 144.98375 * 1 2 3 25 25 H 1.09001 * 109.47238 * 30.00094 * 3 2 1 26 26 H 1.09003 * 109.46967 * 149.99700 * 3 2 1 27 27 H 0.96992 * 119.99719 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.67580 * 52.97758 * 16 14 12 29 29 H 1.09004 * 109.67247 * 292.47900 * 16 14 12 30 30 H 1.08994 * 109.39999 * 169.01128 * 17 16 14 31 31 H 1.09005 * 109.40002 * 288.75059 * 17 16 14 32 32 H 0.97000 * 117.94508 * 182.21583 * 20 18 17 33 33 H 1.09000 * 109.29718 * 101.26281 * 21 20 18 34 34 H 1.09002 * 109.29991 * 220.83720 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1261 2.8778 -1.6727 7 7 3.5535 3.6180 -0.6731 8 14 3.4369 3.4173 -3.4339 9 1 2.3066 4.2600 -3.9003 10 1 4.6971 4.2005 -3.4967 11 1 3.5542 2.2203 -4.3049 12 6 2.1388 -1.1673 0.0005 13 8 3.3491 -1.1687 0.0777 14 6 1.3883 -2.4706 -0.0950 15 1 0.3931 -2.3546 0.3342 16 6 2.1526 -3.5613 0.6652 17 6 1.2846 -4.8214 0.7074 18 6 0.7669 -5.1315 -0.6677 19 8 0.3429 -6.2472 -0.8833 20 7 0.7488 -4.2459 -1.6646 21 6 1.2678 -2.8879 -1.5609 22 1 -0.3634 -0.0898 1.0238 23 1 -0.3633 0.9315 -0.4341 24 1 -0.3634 -0.8416 -0.5897 25 1 1.6085 2.0284 0.5138 26 1 3.1499 1.1383 0.5139 27 1 4.0296 4.4442 -0.8505 28 1 2.3597 -3.2242 1.6809 29 1 3.0896 -3.7781 0.1523 30 1 1.8808 -5.6598 1.0675 31 1 0.4443 -4.6598 1.3827 32 1 0.3660 -4.5229 -2.5118 33 1 2.2507 -2.8411 -2.0299 34 1 0.5914 -2.2036 -2.0731 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106906611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:55 Heat of formation + Delta-G solvation = -79.987200 kcal Electronic energy + Delta-G solvation = -17516.095085 eV Core-core repulsion = 14641.572227 eV Total energy + Delta-G solvation = -2874.522858 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.54228 -38.99557 -36.15047 -34.95643 -33.08194 -32.65741 -30.14217 -27.78407 -25.93321 -24.72788 -23.71304 -22.20046 -19.65420 -18.39100 -17.30017 -16.65581 -16.46320 -16.10261 -15.53385 -15.11587 -14.56745 -14.31725 -13.99066 -13.78149 -13.42653 -13.02538 -12.40723 -12.22637 -12.06527 -11.90053 -11.77028 -11.30052 -11.13065 -10.96870 -10.95135 -10.60902 -10.23309 -9.82034 -9.71752 -9.18621 -9.02166 -8.50469 -7.75810 -6.11402 -4.16995 2.56646 3.01246 3.24993 3.32203 3.34677 3.38073 3.77852 4.37102 4.52755 4.61159 4.72373 4.75871 5.19120 5.23500 5.24135 5.30108 5.40962 5.56411 5.69312 5.71509 5.80952 5.93457 6.11780 6.15968 6.65771 6.95234 7.21555 7.35960 7.43001 7.84234 8.11868 8.14576 8.28298 8.79679 8.95480 9.48552 10.96674 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.038284 B = 0.005753 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.201078 B = 4866.272775 C = 5111.111399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.600 5.600 3 C 0.243 3.757 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.514 3.486 13 O -0.535 6.535 14 C -0.127 4.127 15 H 0.096 0.904 16 C -0.105 4.105 17 C -0.134 4.134 18 C 0.520 3.480 19 O -0.566 6.566 20 N -0.716 5.716 21 C 0.122 3.878 22 H 0.045 0.955 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.264 0.736 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.400 0.600 33 H 0.078 0.922 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.543 -10.731 1.408 13.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.331 5.331 3 C 0.124 3.876 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.299 3.701 13 O -0.412 6.412 14 C -0.149 4.149 15 H 0.114 0.886 16 C -0.143 4.143 17 C -0.174 4.174 18 C 0.308 3.692 19 O -0.446 6.446 20 N -0.367 5.367 21 C -0.003 4.003 22 H 0.064 0.936 23 H 0.096 0.904 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.236 0.764 33 H 0.096 0.904 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.912 -11.013 1.610 13.101 hybrid contribution -0.080 0.566 -1.345 1.461 sum -6.992 -10.446 0.265 12.573 Atomic orbital electron populations 1.21689 0.81422 1.02876 1.00323 1.48187 1.06200 1.07831 1.70908 1.19339 0.92690 0.77930 0.97596 1.21407 1.36811 1.06440 0.92166 0.92444 1.24938 0.95274 0.96374 0.97457 1.69928 1.38203 1.14281 1.30784 0.86497 0.77754 0.78631 0.84533 1.20606 1.21042 1.19896 1.19891 0.87817 0.84459 0.77930 1.90686 1.13851 1.86987 1.49662 1.21668 1.01385 0.95168 0.96702 0.88570 1.21514 0.98619 0.92229 1.01969 1.21677 1.01604 1.00224 0.93894 1.20248 0.77656 0.84050 0.87255 1.90743 1.48708 1.21726 1.83394 1.45466 1.62354 1.13549 1.15352 1.21252 1.00868 0.82256 0.95905 0.93603 0.90395 0.92598 0.94917 0.93650 0.92624 0.89971 0.89936 0.87862 0.88160 0.76437 0.90358 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 9.80 59.84 0.59 1.73 16 2 N -0.60 -11.68 2.86 -182.95 -0.52 -12.21 16 3 C 0.24 6.06 5.17 -5.19 -0.03 6.04 16 4 C -0.53 -14.32 9.39 -34.44 -0.32 -14.64 16 5 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.51 9.63 6.70 -10.98 -0.07 9.55 16 13 O -0.53 -12.43 15.92 5.56 0.09 -12.34 16 14 C -0.13 -1.66 1.78 -91.65 -0.16 -1.82 16 15 H 0.10 1.06 6.45 -51.93 -0.34 0.72 16 16 C -0.11 -1.26 4.82 -26.51 -0.13 -1.39 16 17 C -0.13 -1.40 6.03 -28.10 -0.17 -1.57 16 18 C 0.52 6.69 7.71 -11.87 -0.09 6.60 16 19 O -0.57 -9.28 17.78 5.56 0.10 -9.18 16 20 N -0.72 -8.04 5.45 -61.40 -0.33 -8.37 16 21 C 0.12 1.45 6.41 -4.50 -0.03 1.42 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 24 H 0.06 0.63 6.00 -51.93 -0.31 0.32 16 25 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 26 H 0.05 1.28 7.37 -51.93 -0.38 0.90 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.40 3.97 8.80 -40.82 -0.36 3.61 16 33 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 34 H 0.08 0.91 7.58 -51.93 -0.39 0.52 16 LS Contribution 286.60 15.07 4.32 4.32 Total: -1.00 -33.47 286.60 -5.85 -39.32 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.69 Total: -0.08 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -0.52 Total: 7.53 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.12 Total: -45.67 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.19 Total: -21.52 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.47 -5.85 -39.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106906611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.669 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds