Wall clock time and date at job start Sun Mar 29 2020 22:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00281 * 2 1 4 4 C 1.50699 * 109.46883 * 89.99603 * 3 2 1 5 5 H 1.08000 * 120.00502 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99840 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00242 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00233 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46951 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47466 * 120.00164 * 8 6 4 11 11 H 1.48500 * 109.46893 * 240.00235 * 8 6 4 12 12 C 1.34775 * 119.99626 * 179.97438 * 2 1 3 13 13 O 1.21287 * 119.99611 * 184.57728 * 12 2 1 14 14 C 1.50698 * 120.00361 * 4.57870 * 12 2 1 15 15 H 1.09002 * 109.60089 * 45.33154 * 14 12 2 16 16 C 1.53346 * 109.60344 * 165.65343 * 14 12 2 17 17 C 1.53035 * 108.43874 * 187.14037 * 16 14 12 18 18 C 1.50169 * 110.00183 * 311.34513 * 17 16 14 19 19 O 1.21290 * 118.24485 * 197.48815 * 18 17 16 20 20 N 1.33355 * 123.51312 * 17.46504 * 18 17 16 21 21 C 1.45754 * 124.10304 * 357.79961 * 20 18 17 22 22 H 1.09009 * 109.47053 * 84.49262 * 1 2 3 23 23 H 1.09000 * 109.47031 * 204.49096 * 1 2 3 24 24 H 1.08996 * 109.47045 * 324.49422 * 1 2 3 25 25 H 1.09007 * 109.47235 * 329.99983 * 3 2 1 26 26 H 1.09000 * 109.47465 * 210.00317 * 3 2 1 27 27 H 0.96999 * 120.00369 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.68062 * 307.02583 * 16 14 12 29 29 H 1.09008 * 109.67349 * 67.55880 * 16 14 12 30 30 H 1.09003 * 109.44159 * 191.12068 * 17 16 14 31 31 H 1.08997 * 109.17800 * 71.40721 * 17 16 14 32 32 H 0.96994 * 117.94936 * 177.77663 * 20 18 17 33 33 H 1.09001 * 109.29821 * 258.74092 * 21 20 18 34 34 H 1.08998 * 109.29930 * 139.36698 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 1.4208 5 1 2.0980 1.0957 2.2417 6 6 3.1260 2.8779 1.6728 7 7 3.5525 3.6185 0.6732 8 14 3.4379 3.4168 3.4339 9 1 2.8607 2.4164 4.3673 10 1 4.9004 3.5257 3.6667 11 1 2.7998 4.7372 3.6679 12 6 2.1388 -1.1672 0.0005 13 8 3.3488 -1.1689 0.0843 14 6 1.3889 -2.4703 -0.1031 15 1 0.6333 -2.3961 -0.8852 16 6 2.3677 -3.6019 -0.4391 17 6 1.5617 -4.8734 -0.7139 18 6 0.5556 -5.0902 0.3796 19 8 0.0640 -6.1927 0.4969 20 7 0.1740 -4.1355 1.2289 21 6 0.7149 -2.7820 1.2337 22 1 -0.3634 0.0986 -1.0230 23 1 -0.3633 -0.9352 0.4260 24 1 -0.3633 0.8365 0.5968 25 1 1.6085 2.0284 -0.5139 26 1 3.1499 1.1384 -0.5139 27 1 4.0287 4.4447 0.8504 28 1 2.9484 -3.3349 -1.3221 29 1 3.0378 -3.7700 0.4042 30 1 2.2367 -5.7281 -0.7596 31 1 1.0437 -4.7699 -1.6673 32 1 -0.5063 -4.3555 1.8843 33 1 1.4464 -2.6892 2.0363 34 1 -0.0940 -2.0715 1.4037 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106906613.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:57 Heat of formation + Delta-G solvation = -75.067655 kcal Electronic energy + Delta-G solvation = -17537.181262 eV Core-core repulsion = 14662.871732 eV Total energy + Delta-G solvation = -2874.309530 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.58447 -39.00674 -36.15160 -35.01048 -33.03989 -32.67782 -30.21511 -27.68211 -26.07089 -24.66339 -23.69672 -22.19722 -19.67924 -18.46984 -17.24532 -16.75127 -16.55015 -16.05393 -15.50361 -15.09684 -14.64301 -14.36522 -14.03927 -13.67729 -13.55756 -13.04536 -12.34893 -12.20518 -12.03797 -11.78984 -11.74827 -11.28451 -11.14336 -10.99690 -10.89832 -10.64156 -10.21410 -9.82232 -9.68050 -9.19711 -9.02065 -8.49469 -7.75460 -6.10192 -4.15111 2.55416 3.03135 3.25903 3.32665 3.34696 3.37679 3.77341 4.38646 4.52212 4.56280 4.69599 4.73884 5.11213 5.21738 5.23824 5.28731 5.32892 5.61671 5.66578 5.74635 5.82710 5.97300 6.13508 6.18095 6.63940 6.95312 7.19290 7.34754 7.43156 7.85477 8.10424 8.15951 8.28562 8.81394 8.96400 9.50259 10.98026 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.040320 B = 0.005626 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.273880 B = 4975.938237 C = 5104.341690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.600 5.600 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.284 1.284 12 C 0.511 3.489 13 O -0.531 6.531 14 C -0.125 4.125 15 H 0.098 0.902 16 C -0.103 4.103 17 C -0.135 4.135 18 C 0.521 3.479 19 O -0.566 6.566 20 N -0.716 5.716 21 C 0.114 3.886 22 H 0.046 0.954 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.033 0.967 26 H 0.043 0.957 27 H 0.263 0.737 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.400 0.600 33 H 0.076 0.924 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.755 -10.799 -1.918 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.331 5.331 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.210 1.210 12 C 0.296 3.704 13 O -0.408 6.408 14 C -0.148 4.148 15 H 0.116 0.884 16 C -0.141 4.141 17 C -0.175 4.175 18 C 0.308 3.692 19 O -0.445 6.445 20 N -0.368 5.368 21 C -0.011 4.011 22 H 0.065 0.935 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.235 0.765 33 H 0.095 0.905 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.084 -11.095 -2.030 13.320 hybrid contribution -0.173 0.596 1.226 1.374 sum -7.258 -10.499 -0.804 12.789 Atomic orbital electron populations 1.21884 0.81536 1.02592 1.01095 1.48179 1.06144 1.07816 1.71008 1.19318 0.92459 0.78000 0.97654 1.21433 1.36580 1.06233 0.92210 0.92392 1.24939 0.95328 0.96395 0.97447 1.69935 1.38390 1.14315 1.30707 0.86443 0.78136 0.78317 0.84513 1.19822 1.20845 1.20963 1.19933 0.87921 0.84452 0.78103 1.90698 1.13939 1.86858 1.49311 1.21659 0.99310 0.95295 0.98488 0.88420 1.21478 0.97032 0.91447 1.04177 1.21683 0.97596 1.00484 0.97720 1.20266 0.82550 0.83661 0.82708 1.90746 1.56967 1.23682 1.73114 1.45471 1.43225 1.11932 1.36167 1.21528 0.99355 0.82720 0.97452 0.93498 0.91848 0.90665 0.94888 0.93878 0.92714 0.89609 0.90179 0.87841 0.88172 0.76459 0.90531 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 10.03 59.85 0.60 1.62 16 2 N -0.60 -11.62 2.86 -182.95 -0.52 -12.15 16 3 C 0.24 6.09 5.15 -5.20 -0.03 6.06 16 4 C -0.53 -14.31 9.39 -34.44 -0.32 -14.64 16 5 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.51 9.54 6.89 -10.99 -0.08 9.47 16 13 O -0.53 -12.38 15.74 5.55 0.09 -12.30 16 14 C -0.13 -1.62 1.74 -91.64 -0.16 -1.78 16 15 H 0.10 1.07 7.62 -51.93 -0.40 0.67 16 16 C -0.10 -1.26 4.64 -26.53 -0.12 -1.38 16 17 C -0.14 -1.41 6.03 -28.12 -0.17 -1.58 16 18 C 0.52 6.61 7.72 -11.87 -0.09 6.52 16 19 O -0.57 -9.19 17.78 5.55 0.10 -9.09 16 20 N -0.72 -7.76 5.45 -61.39 -0.33 -8.09 16 21 C 0.11 1.28 6.19 -4.49 -0.03 1.26 16 22 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 23 H 0.06 0.69 4.01 -51.93 -0.21 0.48 16 24 H 0.07 1.10 8.11 -51.93 -0.42 0.68 16 25 H 0.03 0.83 8.07 -51.92 -0.42 0.41 16 26 H 0.04 1.22 7.49 -51.93 -0.39 0.83 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 29 H 0.08 1.07 8.13 -51.92 -0.42 0.64 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.40 3.78 8.80 -40.82 -0.36 3.42 16 33 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 34 H 0.09 0.88 5.55 -51.93 -0.29 0.59 16 LS Contribution 283.76 15.07 4.28 4.28 Total: -1.00 -33.76 283.76 -5.73 -39.49 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.56 Total: -0.35 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -0.49 Total: 7.14 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.12 Total: -45.44 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: 0.19 Total: -21.39 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.76 -5.73 -39.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106906613.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.573 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds