Wall clock time and date at job start Sun Mar 29 2020 22:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99561 * 2 1 4 4 H 1.48497 * 109.46873 * 270.00041 * 3 2 1 5 5 H 1.48492 * 109.47186 * 29.99902 * 3 2 1 6 6 H 1.48503 * 109.47023 * 150.00230 * 3 2 1 7 7 C 1.37874 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99950 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00133 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47363 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47367 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47428 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00211 * 179.97438 * 12 11 10 14 14 O 1.21586 * 120.00048 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99940 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99969 * 180.02562 * 15 13 12 17 17 C 1.54268 * 110.02813 * 272.63206 * 16 15 13 18 18 C 1.54971 * 104.15564 * 217.13629 * 17 16 15 19 19 C 1.54883 * 102.77798 * 37.88503 * 18 17 16 20 20 C 1.53871 * 110.03427 * 155.40981 * 16 15 13 21 21 H 0.96993 * 120.00252 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.46606 * 60.00005 * 9 7 2 23 23 H 1.08998 * 109.47358 * 300.00739 * 9 7 2 24 24 H 1.08998 * 109.47353 * 60.00160 * 10 9 7 25 25 H 1.09001 * 109.47005 * 300.00178 * 10 9 7 26 26 H 1.08998 * 109.47065 * 59.99602 * 11 10 9 27 27 H 1.09001 * 109.46892 * 299.99866 * 11 10 9 28 28 H 0.97004 * 119.99747 * 0.02562 * 12 11 10 29 29 H 0.97005 * 120.00161 * 359.72198 * 15 13 12 30 30 H 1.08996 * 110.01294 * 34.01804 * 16 15 13 31 31 H 1.09004 * 110.48773 * 335.77712 * 17 16 15 32 32 H 1.08996 * 110.48996 * 98.42933 * 17 16 15 33 33 H 1.09002 * 110.71525 * 279.57326 * 18 17 16 34 34 H 1.08996 * 110.92520 * 156.29778 * 18 17 16 35 35 H 1.09002 * 110.48973 * 203.40432 * 19 18 17 36 36 H 1.08998 * 110.59905 * 80.81890 * 19 18 17 37 37 H 1.08993 * 110.03486 * 238.56624 * 20 16 15 38 38 H 1.09000 * 110.02921 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5517 -2.6363 -0.0009 12 7 6.0401 -4.0175 -0.0002 13 6 7.3652 -4.2637 -0.0006 14 8 8.1553 -3.3396 -0.0010 15 7 7.8144 -5.5344 -0.0004 16 6 9.2548 -5.8020 -0.0002 17 6 9.7866 -5.8333 -1.4480 18 6 10.8547 -6.9560 -1.4353 19 6 10.2237 -8.0186 -0.5017 20 6 9.5329 -7.1907 0.6015 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6803 0.8889 23 1 3.8746 -0.6798 -0.8910 24 1 3.6581 -3.1504 -0.8907 25 1 3.6587 -3.1500 0.8892 26 1 5.9150 -2.1224 0.8890 27 1 5.9150 -2.1226 -0.8910 28 1 5.4098 -4.7548 -0.0002 29 1 7.1841 -6.2717 0.0040 30 1 9.7766 -5.0356 0.5728 31 1 8.9842 -6.0782 -2.1440 32 1 10.2403 -4.8770 -1.7085 33 1 11.7948 -6.5892 -1.0232 34 1 11.0054 -7.3613 -2.4358 35 1 10.9964 -8.6565 -0.0726 36 1 9.4922 -8.6186 -1.0430 37 1 10.1903 -7.0982 1.4659 38 1 8.5961 -7.6656 0.8929 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112734301.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:25 Heat of formation + Delta-G solvation = -59.881625 kcal Electronic energy + Delta-G solvation = -16707.999358 eV Core-core repulsion = 13970.181438 eV Total energy + Delta-G solvation = -2737.817920 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.08566 -38.06694 -35.44375 -33.72451 -33.13608 -31.32229 -29.00931 -28.07245 -26.55534 -22.91057 -21.12389 -20.86137 -20.50685 -20.25976 -18.14558 -16.83613 -16.46575 -15.66354 -15.48838 -15.06468 -14.36999 -14.18147 -13.81334 -13.75858 -13.64822 -12.69426 -12.35250 -12.01365 -11.86715 -11.70041 -11.47148 -11.33968 -11.05038 -11.01462 -10.92448 -10.86618 -10.23956 -9.97933 -9.80114 -9.65826 -9.21443 -9.18057 -8.63899 -8.54319 -6.05357 -4.03995 2.82139 3.32650 3.34798 3.40080 3.44906 4.23166 4.34829 4.40551 4.45711 4.62345 5.11298 5.18919 5.25669 5.27936 5.28910 5.36508 5.50193 5.57406 5.60475 5.71878 5.75579 5.90871 5.98756 6.04036 6.06882 6.41490 6.49289 6.54841 6.72816 6.85235 7.05115 7.25350 7.38599 7.77083 8.14397 8.51342 8.74672 8.98517 9.57045 11.07922 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.064857 B = 0.003427 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.615460 B = 8169.021503 C = 8387.724559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.133 3.867 12 N -0.743 5.743 13 C 0.700 3.300 14 O -0.595 6.595 15 N -0.745 5.745 16 C 0.159 3.841 17 C -0.136 4.136 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.132 4.132 21 H 0.263 0.737 22 H 0.019 0.981 23 H 0.015 0.985 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.395 0.605 29 H 0.394 0.606 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.444 -16.436 -0.715 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.009 3.991 12 N -0.397 5.397 13 C 0.399 3.601 14 O -0.473 6.473 15 N -0.401 5.401 16 C 0.053 3.947 17 C -0.175 4.175 18 C -0.163 4.163 19 C -0.162 4.162 20 C -0.170 4.170 21 H 0.073 0.927 22 H 0.037 0.963 23 H 0.033 0.967 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.228 0.772 29 H 0.227 0.773 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 20.007 -15.417 -0.700 25.268 hybrid contribution -0.363 0.219 -0.027 0.425 sum 19.644 -15.198 -0.727 24.847 Atomic orbital electron populations 1.69913 1.06325 1.26956 1.51096 1.25030 0.94748 0.99253 0.94468 0.86771 0.80424 0.83487 0.78603 1.20238 1.21392 1.18846 1.21103 0.89343 0.94499 1.51018 0.91028 1.19501 0.97210 0.91503 0.96691 1.21702 0.90744 1.00967 1.01655 1.21500 0.95633 0.80151 1.01767 1.45342 1.04850 1.10032 1.79467 1.16054 0.82961 0.83250 0.77800 1.90904 1.55091 1.43253 1.58040 1.45347 1.07601 1.06211 1.80982 1.21447 0.79995 0.96929 0.96293 1.22837 0.98550 0.99192 0.96905 1.22493 0.98327 0.95789 0.99672 1.22351 0.99654 0.97540 0.96609 1.22447 1.01248 0.94626 0.98669 0.92706 0.96283 0.96713 0.92185 0.92161 0.92027 0.92032 0.77217 0.77251 0.89224 0.91201 0.91050 0.91331 0.91448 0.91515 0.91514 0.90752 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 10 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 11 C 0.13 2.27 5.67 -4.04 -0.02 2.25 16 12 N -0.74 -10.54 5.56 -65.23 -0.36 -10.90 16 13 C 0.70 10.54 8.56 -86.92 -0.74 9.80 16 14 O -0.59 -11.50 16.00 5.29 0.08 -11.41 16 15 N -0.75 -8.00 5.05 -57.58 -0.29 -8.29 16 16 C 0.16 1.57 3.24 -66.81 -0.22 1.35 16 17 C -0.14 -1.28 6.54 -25.03 -0.16 -1.44 16 18 C -0.12 -0.88 6.91 -24.70 -0.17 -1.05 16 19 C -0.12 -0.76 6.83 -25.07 -0.17 -0.93 16 20 C -0.13 -0.92 6.57 -25.61 -0.17 -1.08 16 21 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 22 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 23 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.39 4.45 8.49 -40.82 -0.35 4.10 16 29 H 0.39 3.10 8.32 -40.82 -0.34 2.76 16 30 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 31 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.44 7.61 -51.93 -0.40 0.05 16 LS Contribution 310.08 15.07 4.67 4.67 Total: -1.00 -33.32 310.08 -8.61 -41.92 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.47 Total: 0.95 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -2.34 Total: -7.03 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.12 Total: -46.34 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.41 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.32 -8.61 -41.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112734301.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.957 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds