Wall clock time and date at job start Sun Mar 29 2020 22:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99604 * 2 1 4 4 H 1.48500 * 109.47176 * 93.07807 * 3 2 1 5 5 H 1.48499 * 109.47098 * 213.07235 * 3 2 1 6 6 H 1.48495 * 109.47314 * 333.07138 * 3 2 1 7 7 C 1.38809 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00030 * 18.88280 * 7 2 1 9 9 N 1.36936 * 119.99966 * 198.89539 * 7 2 1 10 10 C 1.46934 * 120.62765 * 209.28263 * 9 7 2 11 11 C 1.52761 * 109.00473 * 233.57924 * 10 9 7 12 12 C 1.53035 * 109.38478 * 305.58863 * 11 10 9 13 13 N 1.46903 * 109.46173 * 181.26179 * 12 11 10 14 14 C 1.47009 * 111.00159 * 183.56085 * 13 12 11 15 15 C 1.53099 * 109.25904 * 177.60537 * 14 13 12 16 16 O 1.43019 * 109.25536 * 56.85470 * 15 14 13 17 17 C 1.43023 * 113.73585 * 301.32770 * 16 15 14 18 18 C 1.47014 * 110.99736 * 59.93141 * 13 12 11 19 19 C 1.53043 * 109.54029 * 61.24147 * 12 11 10 20 20 C 1.46921 * 120.63503 * 29.55731 * 9 7 2 21 21 H 0.96997 * 120.00296 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.58267 * 353.41420 * 10 9 7 23 23 H 1.08997 * 109.58616 * 113.84399 * 10 9 7 24 24 H 1.08999 * 109.56425 * 185.55189 * 11 10 9 25 25 H 1.09000 * 109.35862 * 65.50165 * 11 10 9 26 26 H 1.09004 * 109.46103 * 301.21924 * 12 11 10 27 27 H 1.08997 * 109.51238 * 297.54939 * 14 13 12 28 28 H 1.09008 * 109.50065 * 57.67930 * 14 13 12 29 29 H 1.08999 * 109.50940 * 296.92005 * 15 14 13 30 30 H 1.08993 * 109.54473 * 176.81231 * 15 14 13 31 31 H 1.08999 * 109.50641 * 298.73803 * 17 16 15 32 32 H 1.08996 * 109.53577 * 178.62774 * 17 16 15 33 33 H 1.09003 * 109.50924 * 302.32530 * 18 13 12 34 34 H 1.09002 * 109.51114 * 62.41348 * 18 13 12 35 35 H 1.08999 * 109.49480 * 178.68806 * 19 12 11 36 36 H 1.08999 * 109.49718 * 58.58699 * 19 12 11 37 37 H 1.09008 * 109.58959 * 246.16370 * 20 9 7 38 38 H 1.09000 * 109.58983 * 6.58054 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5627 2.0090 1.3980 5 1 3.5136 1.4600 -0.7640 6 1 1.4166 2.6706 -0.6340 7 6 2.0103 -1.2021 -0.0005 8 1 1.5140 -2.1121 -0.3036 9 7 3.3243 -1.2341 0.3835 10 6 4.2419 -2.2391 -0.1707 11 6 4.9208 -2.9807 0.9794 12 6 5.5869 -1.9683 1.9138 13 7 6.2660 -2.6813 3.0040 14 6 6.8470 -1.7373 3.9695 15 6 7.4910 -2.5205 5.1166 16 8 8.4674 -3.4196 4.5840 17 6 7.9357 -4.3537 3.6404 18 6 7.2962 -3.5890 2.4784 19 6 4.5241 -1.0354 2.4990 20 6 3.8421 -0.2681 1.3619 21 1 -0.4850 0.8400 0.0004 22 1 3.6821 -2.9478 -0.7809 23 1 4.9985 -1.7460 -0.7809 24 1 5.6750 -3.6595 0.5812 25 1 4.1741 -3.5502 1.5328 26 1 6.3159 -1.3823 1.3540 27 1 7.6037 -1.1292 3.4740 28 1 6.0623 -1.0921 4.3649 29 1 6.7248 -3.0871 5.6458 30 1 7.9724 -1.8273 5.8063 31 1 7.1824 -4.9735 4.1267 32 1 8.7385 -4.9863 3.2618 33 1 6.8396 -4.2955 1.7853 34 1 8.0598 -3.0107 1.9583 35 1 4.9962 -0.3295 3.1823 36 1 3.7812 -1.6231 3.0382 37 1 4.5655 0.3891 0.8791 38 1 3.0188 0.3232 1.7626 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115820754.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:11 Heat of formation + Delta-G solvation = -10.897443 kcal Electronic energy + Delta-G solvation = -18302.158160 eV Core-core repulsion = 15566.464353 eV Total energy + Delta-G solvation = -2735.693807 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.83294 -37.81530 -35.29856 -32.35628 -31.56413 -30.38518 -30.19751 -26.91531 -24.45351 -24.25184 -22.21665 -21.62659 -20.35740 -19.35082 -16.97035 -16.60987 -16.13254 -15.29289 -15.10380 -14.89667 -14.48286 -14.14310 -14.06124 -13.65048 -13.03130 -12.93906 -12.50948 -12.32839 -11.86299 -11.72501 -11.46503 -11.39692 -11.13506 -10.75148 -10.51678 -10.37622 -10.16223 -9.87930 -9.76447 -9.62171 -9.39592 -8.61032 -8.27773 -6.95177 -5.94442 -3.32406 3.30372 3.47297 3.50596 3.70929 3.88222 4.52887 4.82496 4.93482 4.95608 4.99271 5.08722 5.19128 5.32007 5.37306 5.43500 5.48509 5.57141 5.68617 5.72779 5.74481 5.89645 5.90089 6.07841 6.19896 6.26651 6.30096 6.37187 6.61244 6.64059 6.75351 6.97154 6.99563 7.12937 7.20354 7.98944 8.34348 8.94966 9.72408 10.11199 11.21808 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045265 B = 0.006203 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.435275 B = 4512.511245 C = 4820.650625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.885 3.115 4 H -0.287 1.287 5 H -0.274 1.274 6 H -0.303 1.303 7 C -0.259 4.259 8 H 0.085 0.915 9 N -0.605 5.605 10 C 0.149 3.851 11 C -0.126 4.126 12 C 0.094 3.906 13 N -0.533 5.533 14 C 0.013 3.987 15 C 0.065 3.935 16 O -0.390 6.390 17 C 0.065 3.935 18 C 0.015 3.985 19 C -0.126 4.126 20 C 0.125 3.875 21 H 0.263 0.737 22 H 0.065 0.935 23 H 0.019 0.981 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.034 0.966 27 H 0.038 0.962 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.038 0.962 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.021 0.979 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.293 -5.499 7.284 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.175 4.175 3 Si 0.716 3.284 4 H -0.214 1.214 5 H -0.199 1.199 6 H -0.231 1.231 7 C -0.387 4.387 8 H 0.102 0.898 9 N -0.329 5.329 10 C 0.023 3.977 11 C -0.165 4.165 12 C -0.013 4.013 13 N -0.258 5.258 14 C -0.115 4.115 15 C -0.012 4.012 16 O -0.309 6.309 17 C -0.012 4.012 18 C -0.114 4.114 19 C -0.166 4.166 20 C -0.001 4.001 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.037 0.963 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.039 0.961 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.965 -5.690 7.551 17.701 hybrid contribution 0.746 1.541 -0.527 1.792 sum 15.711 -4.148 7.023 17.703 Atomic orbital electron populations 1.69816 1.05703 1.26556 1.53211 1.25317 0.95228 0.97572 0.99364 0.86958 0.79640 0.84546 0.77241 1.21432 1.19905 1.23132 1.18921 0.84121 0.94543 1.41150 0.89751 1.44352 1.07654 1.35240 1.45691 1.20839 0.92293 0.91569 0.93006 1.22051 0.99361 0.97478 0.97648 1.21595 0.94763 0.94470 0.90502 1.62317 1.27308 1.19917 1.16276 1.22827 0.98697 0.95230 0.94748 1.22665 0.91582 0.92184 0.94781 1.87946 1.35364 1.47705 1.59876 1.22660 0.98292 0.91053 0.89223 1.22810 0.93780 0.97206 0.97567 1.22156 0.97645 0.97932 0.98853 1.21391 0.97055 0.92147 0.89474 0.92753 0.91608 0.96291 0.92788 0.91021 0.94799 0.94352 0.89049 0.92295 0.88763 0.92319 0.88783 0.89174 0.94380 0.92913 0.90779 0.96144 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.01 13.97 55.49 0.78 -27.24 16 2 C 0.02 0.70 5.25 -17.43 -0.09 0.61 16 3 Si 0.89 22.58 24.35 -169.99 -4.14 18.44 16 4 H -0.29 -6.98 6.40 56.52 0.36 -6.62 16 5 H -0.27 -6.93 6.93 56.52 0.39 -6.54 16 6 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 7 C -0.26 -7.28 10.03 -15.06 -0.15 -7.44 16 8 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 9 N -0.61 -14.50 2.75 -172.58 -0.47 -14.97 16 10 C 0.15 2.96 6.49 -3.93 -0.03 2.93 16 11 C -0.13 -2.09 5.15 -26.84 -0.14 -2.23 16 12 C 0.09 1.53 1.90 -67.67 -0.13 1.40 16 13 N -0.53 -7.53 4.60 -226.28 -1.04 -8.57 16 14 C 0.01 0.17 5.25 -3.71 -0.02 0.15 16 15 C 0.06 0.73 7.01 37.21 0.26 0.99 16 16 O -0.39 -4.91 10.83 -35.23 -0.38 -5.29 16 17 C 0.06 0.71 7.01 37.21 0.26 0.97 16 18 C 0.01 0.18 5.34 -3.71 -0.02 0.16 16 19 C -0.13 -2.28 5.06 -26.61 -0.13 -2.41 16 20 C 0.13 2.76 4.20 -3.71 -0.02 2.74 16 21 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 22 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 23 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.76 6.28 -51.93 -0.33 0.44 16 25 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 1.14 6.08 -51.92 -0.32 0.82 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.04 6.16 -51.93 -0.32 0.72 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.84 6.22 -51.93 -0.32 0.52 16 36 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.02 0.45 7.21 -51.92 -0.37 0.08 16 38 H 0.08 1.85 4.52 -51.93 -0.23 1.61 16 LS Contribution 281.80 15.07 4.25 4.25 Total: -1.00 -30.88 281.80 -7.36 -38.24 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.14 Total: -2.71 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -0.20 Total: -2.14 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.74 Total: -50.78 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.38 Total: -5.29 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.14 Total: 18.44 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.88 -7.36 -38.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115820754.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.341 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds