Wall clock time and date at job start Sun Mar 29 2020 22:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99780 * 2 1 4 4 H 1.48496 * 109.47389 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46786 * 300.00156 * 3 2 1 6 6 H 1.48501 * 109.47113 * 59.99981 * 3 2 1 7 7 C 1.38807 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00516 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64998 * 359.95821 * 9 7 2 11 11 C 1.54915 * 104.83334 * 204.16451 * 10 9 7 12 12 C 1.55165 * 101.57980 * 322.99105 * 11 10 9 13 13 H 1.08993 * 110.71917 * 277.13865 * 12 11 10 14 14 C 1.52997 * 110.71789 * 153.86302 * 12 11 10 15 15 N 1.46898 * 109.46873 * 180.02562 * 14 12 11 16 16 C 1.47012 * 111.00233 * 293.63409 * 15 14 12 17 17 C 1.53093 * 109.26180 * 177.60662 * 16 15 14 18 18 O 1.43024 * 109.25814 * 56.85024 * 17 16 15 19 19 C 1.43016 * 113.73908 * 301.33423 * 18 17 16 20 20 C 1.47014 * 110.99893 * 170.00493 * 15 14 12 21 21 C 1.47022 * 125.64666 * 180.02562 * 9 7 2 22 22 H 0.96996 * 120.00418 * 359.97438 * 1 2 3 23 23 H 1.08997 * 110.36855 * 323.00192 * 10 9 7 24 24 H 1.08997 * 110.36655 * 85.33065 * 10 9 7 25 25 H 1.08995 * 111.00392 * 204.91661 * 11 10 9 26 26 H 1.09001 * 111.00387 * 81.05917 * 11 10 9 27 27 H 1.08993 * 109.47505 * 300.02434 * 14 12 11 28 28 H 1.09004 * 109.46953 * 60.02320 * 14 12 11 29 29 H 1.09003 * 109.51216 * 297.54785 * 16 15 14 30 30 H 1.09009 * 109.50510 * 57.67376 * 16 15 14 31 31 H 1.09000 * 109.50852 * 296.92318 * 17 16 15 32 32 H 1.08996 * 109.54779 * 176.80573 * 17 16 15 33 33 H 1.09004 * 109.50450 * 298.73522 * 19 18 17 34 34 H 1.08988 * 109.50774 * 178.60000 * 19 18 17 35 35 H 1.09005 * 109.50572 * 302.32420 * 20 15 14 36 36 H 1.09001 * 109.50867 * 62.41166 * 20 15 14 37 37 H 1.08997 * 109.88723 * 59.48965 * 21 9 7 38 38 H 1.08998 * 109.88661 * 298.31946 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0009 11 6 -0.4009 -3.9323 0.6133 12 6 0.7787 -4.7525 0.0273 13 1 0.5453 -5.0982 -0.9796 14 6 1.1244 -5.9311 0.9396 15 7 2.2428 -6.6870 0.3602 16 6 1.8458 -7.3329 -0.8994 17 6 3.0539 -8.0582 -1.4977 18 8 3.5606 -8.9964 -0.5445 19 6 3.9574 -8.4013 0.6940 20 6 2.7583 -7.6795 1.3145 21 6 1.9320 -3.7274 -0.0005 22 1 -0.4850 0.8400 0.0004 23 1 -0.5987 -1.7588 0.6167 24 1 -0.5281 -2.4872 -1.0172 25 1 -1.3585 -4.3328 0.2808 26 1 -0.3501 -3.8979 1.7016 27 1 1.4091 -5.5579 1.9232 28 1 0.2561 -6.5830 1.0356 29 1 1.0495 -8.0515 -0.7048 30 1 1.4913 -6.5769 -1.6001 31 1 3.8298 -7.3326 -1.7419 32 1 2.7514 -8.5859 -2.4022 33 1 4.7595 -7.6856 0.5135 34 1 4.3074 -9.1771 1.3749 35 1 3.0701 -7.1764 2.2299 36 1 1.9764 -8.4031 1.5451 37 1 2.5590 -3.8505 0.8825 38 1 2.5279 -3.8646 -0.9028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129178239.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:22 Heat of formation + Delta-G solvation = -13.511866 kcal Electronic energy + Delta-G solvation = -17898.737783 eV Core-core repulsion = 15162.930607 eV Total energy + Delta-G solvation = -2735.807177 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.63076 -37.59797 -35.44750 -32.60897 -31.23316 -29.96078 -28.55370 -26.68019 -24.84898 -24.07397 -22.78596 -20.53848 -20.04791 -19.15055 -16.85738 -16.46720 -16.12941 -15.40937 -15.10530 -14.97160 -14.51980 -14.23199 -13.80655 -13.53225 -12.74821 -12.37291 -12.16897 -11.88587 -11.53365 -11.51649 -11.39755 -11.03942 -10.87127 -10.74571 -10.70269 -10.09850 -10.01953 -9.95611 -9.69131 -9.61118 -9.40994 -8.58783 -8.28519 -6.73428 -5.58656 -2.99066 3.43338 3.48809 3.51429 3.72087 3.88387 4.55264 4.82509 4.95827 4.97650 5.09486 5.20626 5.34632 5.44266 5.49103 5.53499 5.56147 5.62982 5.70077 5.74065 5.81998 5.91024 6.04847 6.11925 6.16083 6.47389 6.63839 6.72505 6.91459 6.99054 7.09289 7.10729 7.11846 7.58549 7.71369 7.92364 8.43948 9.30117 9.91764 10.57813 11.45651 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040367 B = 0.005233 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.475704 B = 5349.790761 C = 5655.318768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.015 4.015 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.216 4.216 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.153 3.847 11 C -0.140 4.140 12 C -0.096 4.096 13 H 0.067 0.933 14 C 0.071 3.929 15 N -0.533 5.533 16 C 0.016 3.984 17 C 0.064 3.936 18 O -0.390 6.390 19 C 0.064 3.936 20 C 0.018 3.982 21 C 0.156 3.844 22 H 0.250 0.750 23 H 0.105 0.895 24 H 0.009 0.991 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.024 0.976 38 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.993 -15.951 0.971 16.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.210 4.210 3 Si 0.743 3.257 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.345 4.345 8 H 0.095 0.905 9 N -0.335 5.335 10 C 0.028 3.972 11 C -0.179 4.179 12 C -0.116 4.116 13 H 0.086 0.914 14 C -0.057 4.057 15 N -0.258 5.258 16 C -0.112 4.112 17 C -0.013 4.013 18 O -0.309 6.309 19 C -0.013 4.013 20 C -0.111 4.111 21 C 0.030 3.970 22 H 0.061 0.939 23 H 0.123 0.877 24 H 0.027 0.973 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.056 0.944 37 H 0.042 0.958 38 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.373 -15.595 0.827 15.977 hybrid contribution -0.298 0.581 0.173 0.675 sum 3.076 -15.014 1.000 15.359 Atomic orbital electron populations 1.69812 1.04875 1.24456 1.58276 1.24772 0.95704 0.97637 1.02857 0.86017 0.78674 0.83782 0.77189 1.20565 1.21848 1.21826 1.19147 0.90534 0.82602 1.42178 0.90527 1.44594 1.01970 1.00118 1.86789 1.21890 0.84915 0.92443 0.97976 1.23044 0.95804 0.99053 1.00006 1.22179 0.97386 0.94000 0.98005 0.91422 1.22175 0.90583 0.94443 0.98484 1.62197 1.34730 1.24682 1.04153 1.22813 0.97064 0.97934 0.93364 1.22677 0.95210 0.92043 0.91402 1.87945 1.83210 1.34509 1.25218 1.22651 0.95709 0.97293 0.85630 1.22767 0.97598 0.94269 0.96423 1.21130 0.93270 0.84786 0.97824 0.93926 0.87743 0.97283 0.92676 0.92247 0.90534 0.95177 0.94358 0.89074 0.92079 0.88683 0.92151 0.88773 0.89666 0.94372 0.95801 0.96400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.53 10.09 55.49 0.56 -26.97 16 2 C -0.01 -0.43 5.49 -17.43 -0.10 -0.52 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.22 -6.21 10.27 -15.06 -0.15 -6.36 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.61 -16.13 3.39 -170.07 -0.58 -16.71 16 10 C 0.15 3.81 5.89 -2.53 -0.01 3.80 16 11 C -0.14 -2.69 6.53 -24.57 -0.16 -2.85 16 12 C -0.10 -1.71 2.84 -88.78 -0.25 -1.97 16 13 H 0.07 1.17 6.47 -51.93 -0.34 0.84 16 14 C 0.07 1.04 4.27 -3.83 -0.02 1.03 16 15 N -0.53 -7.33 4.54 -234.31 -1.06 -8.39 16 16 C 0.02 0.21 5.45 -3.71 -0.02 0.19 16 17 C 0.06 0.73 7.01 37.21 0.26 0.99 16 18 O -0.39 -4.89 10.83 -35.23 -0.38 -5.28 16 19 C 0.06 0.69 7.01 37.21 0.26 0.95 16 20 C 0.02 0.21 5.64 -3.71 -0.02 0.19 16 21 C 0.16 3.40 6.65 -3.06 -0.02 3.38 16 22 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.10 2.92 5.87 -51.93 -0.31 2.61 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 1.12 8.05 -51.93 -0.42 0.71 16 27 H 0.08 1.15 7.96 -51.93 -0.41 0.74 16 28 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 1.17 6.35 -51.92 -0.33 0.84 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.81 8.14 -51.94 -0.42 0.38 16 35 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.53 7.76 -51.93 -0.40 0.13 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 294.86 15.07 4.44 4.44 Total: -1.00 -31.15 294.86 -8.67 -39.82 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -6.40 Total: -3.20 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.23 Total: -1.19 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -1.08 Total: -52.07 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.38 Total: -5.28 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.15 -8.67 -39.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129178239.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.312 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds