Wall clock time and date at job start Sun Mar 29 2020 22:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 119.99652 * 2 1 4 4 C 1.50694 * 109.47434 * 269.99840 * 3 2 1 5 5 H 1.08007 * 119.99574 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00388 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99932 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 119.99975 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47162 * 89.99695 * 8 6 4 10 10 H 1.48499 * 109.47333 * 210.00108 * 8 6 4 11 11 H 1.48502 * 109.47016 * 330.00101 * 8 6 4 12 12 C 1.34774 * 120.00555 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00345 * 182.56340 * 12 2 1 14 14 C 1.50700 * 119.99691 * 2.56072 * 12 2 1 15 15 H 1.09002 * 109.67468 * 311.91044 * 14 12 2 16 16 C 1.53345 * 109.67258 * 191.37172 * 14 12 2 17 17 C 1.52922 * 108.67549 * 172.73872 * 16 14 12 18 18 N 1.45745 * 110.55273 * 50.53429 * 17 16 14 19 19 C 1.33352 * 124.11876 * 341.43174 * 18 17 16 20 20 O 1.21280 * 118.24586 * 181.92894 * 19 18 17 21 21 C 1.50179 * 123.50827 * 1.65098 * 19 18 17 22 22 H 1.09002 * 109.47638 * 264.79179 * 1 2 3 23 23 H 1.08998 * 109.47796 * 24.79969 * 1 2 3 24 24 H 1.09004 * 109.46935 * 144.79849 * 1 2 3 25 25 H 1.09007 * 109.47291 * 30.00008 * 3 2 1 26 26 H 1.08998 * 109.47182 * 149.99629 * 3 2 1 27 27 H 0.97000 * 119.99802 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.60442 * 292.49467 * 16 14 12 29 29 H 1.08995 * 109.60345 * 52.98878 * 16 14 12 30 30 H 1.08996 * 109.30672 * 171.06707 * 17 16 14 31 31 H 1.09007 * 109.29777 * 290.44494 * 17 16 14 32 32 H 0.96997 * 117.93460 * 161.16539 * 18 17 16 33 33 H 1.09001 * 109.40058 * 102.82530 * 21 19 18 34 34 H 1.08995 * 109.40070 * 222.65685 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0981 1.0958 -2.2417 6 6 3.1258 2.8781 -1.6727 7 7 3.3455 3.2575 -2.9127 8 14 3.7314 3.9301 -0.2529 9 1 5.1048 3.5095 0.1242 10 1 3.7462 5.3567 -0.6650 11 1 2.8247 3.7604 0.9108 12 6 2.1390 -1.1671 0.0005 13 8 3.3508 -1.1676 0.0475 14 6 1.3866 -2.4716 -0.0572 15 1 0.5804 -2.4631 0.6763 16 6 2.3433 -3.6328 0.2394 17 6 1.5282 -4.9215 0.3548 18 7 0.6456 -5.0735 -0.7951 19 6 0.2983 -4.0754 -1.6085 20 8 -0.4721 -4.3146 -2.5140 21 6 0.8055 -2.6697 -1.4594 22 1 -0.3634 -0.0933 1.0234 23 1 -0.3634 0.9328 -0.4310 24 1 -0.3633 -0.8398 -0.5924 25 1 1.6083 2.0285 0.5139 26 1 3.1498 1.1385 0.5139 27 1 3.8216 4.0838 -3.0899 28 1 3.0652 -3.7281 -0.5716 29 1 2.8659 -3.4456 1.1774 30 1 2.2062 -5.7733 0.4068 31 1 0.9270 -4.8874 1.2635 32 1 0.2917 -5.9569 -0.9827 33 1 1.5811 -2.4839 -2.2024 34 1 -0.0165 -1.9702 -1.6114 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131782298.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:59 Heat of formation + Delta-G solvation = -99.814120 kcal Electronic energy + Delta-G solvation = -17634.234724 eV Core-core repulsion = 14758.852106 eV Total energy + Delta-G solvation = -2875.382618 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.74605 -40.35226 -37.40004 -36.63846 -34.85603 -34.04734 -30.84711 -30.29415 -27.60595 -26.27464 -24.72161 -23.35473 -20.32996 -19.98943 -19.13116 -18.36807 -18.03389 -17.34882 -16.97233 -16.38946 -16.20068 -15.75633 -15.09827 -14.98380 -14.77136 -14.48891 -14.32971 -13.69354 -13.58908 -13.16663 -13.03574 -12.71486 -12.67793 -12.40733 -12.06230 -12.02828 -11.96209 -11.75123 -11.29861 -10.83283 -10.48079 -10.06605 -9.39669 -8.34051 -6.39797 1.33502 1.37344 1.45960 1.50903 1.70343 2.29434 2.30851 2.31538 3.00437 3.38294 3.62827 3.67542 3.73412 4.11270 4.21719 4.24682 4.44296 4.61356 4.65856 4.71469 4.80369 4.86626 4.97277 5.00142 5.06694 5.24766 5.45385 5.59805 5.84447 6.22759 6.25647 6.62264 6.67291 7.15768 7.20517 7.38126 8.82932 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.037745 B = 0.006177 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.636659 B = 4532.055586 C = 4776.807778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.605 5.605 3 C 0.221 3.779 4 C -0.539 4.539 5 H 0.028 0.972 6 C 0.009 3.991 7 N -0.947 5.947 8 Si 0.950 3.050 9 H -0.275 1.275 10 H -0.277 1.277 11 H -0.236 1.236 12 C 0.504 3.496 13 O -0.587 6.587 14 C -0.095 4.095 15 H 0.135 0.865 16 C -0.118 4.118 17 C 0.116 3.884 18 N -0.705 5.705 19 C 0.531 3.469 20 O -0.602 6.602 21 C -0.128 4.128 22 H 0.087 0.913 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.022 0.978 27 H 0.268 0.732 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.410 0.590 33 H 0.082 0.918 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 -14.881 12.588 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.335 5.335 3 C 0.099 3.901 4 C -0.577 4.577 5 H 0.046 0.954 6 C -0.189 4.189 7 N -0.587 5.587 8 Si 0.773 3.227 9 H -0.201 1.201 10 H -0.202 1.202 11 H -0.159 1.159 12 C 0.292 3.708 13 O -0.468 6.468 14 C -0.116 4.116 15 H 0.152 0.848 16 C -0.156 4.156 17 C -0.007 4.007 18 N -0.356 5.356 19 C 0.318 3.682 20 O -0.484 6.484 21 C -0.168 4.168 22 H 0.105 0.895 23 H 0.087 0.913 24 H 0.101 0.899 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.246 0.754 33 H 0.101 0.899 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.771 -14.627 12.133 20.175 hybrid contribution 0.564 0.694 -0.454 1.003 sum -6.207 -13.933 11.680 19.211 Atomic orbital electron populations 1.22161 0.77861 1.04042 1.03295 1.47955 1.08313 1.06051 1.71209 1.19370 0.92943 0.82579 0.95202 1.21594 1.36820 1.06788 0.92516 0.95387 1.25893 0.95315 0.99014 0.98661 1.70062 1.42728 1.24469 1.21414 0.85682 0.79615 0.77626 0.79820 1.20088 1.20212 1.15879 1.21100 0.87678 0.86225 0.75762 1.90638 1.16193 1.88001 1.51980 1.21435 1.00004 0.91829 0.98376 0.84751 1.21737 0.97165 0.92361 1.04336 1.21655 0.92982 0.98117 0.87979 1.45429 1.49227 1.11591 1.29394 1.19895 0.79749 0.87645 0.80940 1.90746 1.38108 1.84484 1.35094 1.21679 1.02990 0.94514 0.97615 0.89498 0.91251 0.89864 0.93074 0.95963 0.92293 0.92275 0.88263 0.87149 0.88224 0.75352 0.89921 0.86903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.85 9.89 127.77 1.26 3.12 16 2 N -0.60 -23.34 2.86 -851.14 -2.43 -25.77 16 3 C 0.22 10.52 4.22 85.63 0.36 10.88 16 4 C -0.54 -31.50 9.94 25.60 0.25 -31.24 16 5 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 6 C 0.01 0.53 5.47 84.65 0.46 1.00 16 7 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 8 Si 0.95 44.03 27.47 68.60 1.88 45.91 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.24 -9.69 6.54 99.48 0.65 -9.04 16 12 C 0.50 18.87 6.91 87.66 0.61 19.47 16 13 O -0.59 -27.56 15.63 -3.03 -0.05 -27.61 16 14 C -0.10 -2.34 1.76 -11.40 -0.02 -2.36 16 15 H 0.13 2.32 7.62 -2.39 -0.02 2.30 16 16 C -0.12 -2.36 4.64 30.68 0.14 -2.22 16 17 C 0.12 1.31 7.17 86.50 0.62 1.93 16 18 N -0.71 -11.85 5.45 -467.33 -2.55 -14.40 16 19 C 0.53 13.75 7.71 87.71 0.68 14.43 16 20 O -0.60 -20.74 17.78 -3.03 -0.05 -20.80 16 21 C -0.13 -3.50 5.08 29.71 0.15 -3.35 16 22 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.07 2.04 8.03 -2.39 -0.02 2.02 16 24 H 0.08 1.94 4.39 -2.38 -0.01 1.92 16 25 H 0.05 2.22 7.13 -2.38 -0.02 2.20 16 26 H 0.02 1.13 6.82 -2.39 -0.02 1.11 16 27 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 28 H 0.06 1.47 8.12 -2.39 -0.02 1.45 16 29 H 0.10 1.91 8.08 -2.39 -0.02 1.89 16 30 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.41 5.55 8.80 -92.71 -0.82 4.73 16 33 H 0.08 2.72 8.09 -2.39 -0.02 2.70 16 34 H 0.11 3.02 5.58 -2.39 -0.01 3.01 16 Total: -1.00 -82.26 280.14 1.87 -80.39 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.24 Total: 10.41 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 4.52 Total: 11.65 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -4.68 Total: -99.97 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -0.10 Total: -48.40 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Total: -82.26 1.87 -80.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131782298.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.427 kcal (2) G-P(sol) polarization free energy of solvation -82.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds