Wall clock time and date at job start Sun Mar 29 2020 22:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47559 * 2 1 4 4 C 1.37105 * 119.99801 * 88.62179 * 3 2 1 5 5 H 1.07998 * 119.99676 * 177.76240 * 4 3 2 6 6 C 1.38951 * 119.99983 * 357.75663 * 4 3 2 7 7 N 1.31416 * 120.00413 * 333.62703 * 6 4 3 8 8 Si 1.86794 * 119.99985 * 153.62191 * 6 4 3 9 9 H 1.48506 * 109.47351 * 90.00019 * 8 6 4 10 10 H 1.48500 * 109.47352 * 210.00454 * 8 6 4 11 11 H 1.48501 * 109.47034 * 330.00481 * 8 6 4 12 12 C 1.34770 * 119.99984 * 268.61984 * 3 2 1 13 13 O 1.21288 * 120.00247 * 2.54100 * 12 3 2 14 14 C 1.50704 * 119.99591 * 182.53140 * 12 3 2 15 15 H 1.08997 * 109.67589 * 326.81578 * 14 12 3 16 16 C 1.53353 * 109.70142 * 206.29652 * 14 12 3 17 17 C 1.53097 * 108.52734 * 172.56274 * 16 14 12 18 18 N 1.45751 * 110.38640 * 51.11618 * 17 16 14 19 19 C 1.33351 * 124.10841 * 340.46404 * 18 17 16 20 20 O 1.21281 * 118.24932 * 182.48244 * 19 18 17 21 21 C 1.50175 * 123.50660 * 2.50113 * 19 18 17 22 22 H 1.09005 * 109.46886 * 299.99954 * 1 2 3 23 23 H 1.09001 * 109.46806 * 59.99687 * 1 2 3 24 24 H 1.08990 * 109.47511 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47289 * 239.99845 * 2 1 3 26 26 H 1.09001 * 109.46806 * 120.00313 * 2 1 3 27 27 H 0.96989 * 120.00248 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.60211 * 292.47740 * 16 14 12 29 29 H 1.08995 * 109.60201 * 52.96446 * 16 14 12 30 30 H 1.09004 * 109.50065 * 290.74288 * 17 16 14 31 31 H 1.08996 * 109.20730 * 171.30591 * 17 16 14 32 32 H 0.97004 * 117.94768 * 160.74653 * 18 17 16 33 33 H 1.09003 * 109.39992 * 102.54902 * 21 19 18 34 34 H 1.09000 * 109.40561 * 222.28856 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2201 2.0370 1.1870 5 1 2.6143 3.0424 1.1883 6 6 1.9170 1.4080 2.3884 7 7 1.0020 0.4654 2.4242 8 14 2.8103 1.9022 3.9527 9 1 2.0645 2.9969 4.6240 10 1 2.8983 0.7324 4.8632 11 1 4.1785 2.3703 3.6146 12 6 2.2696 2.0071 -1.1668 13 8 2.0477 1.4433 -2.2175 14 6 2.8260 3.4077 -1.1659 15 1 2.4377 3.9563 -0.3079 16 6 2.4252 4.1240 -2.4613 17 6 2.8405 5.5936 -2.3530 18 7 4.2391 5.6980 -1.9564 19 6 4.9257 4.7161 -1.3710 20 8 6.0731 4.9338 -1.0440 21 6 4.3542 3.3550 -1.0953 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0275 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.7902 0.0267 3.2629 28 1 2.9302 3.6588 -3.3077 29 1 1.3455 4.0592 -2.5959 30 1 2.2175 6.0941 -1.6118 31 1 2.7032 6.0772 -3.3202 32 1 4.6982 6.5357 -2.1253 33 1 4.7268 2.6487 -1.8373 34 1 4.6596 3.0285 -0.1013 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132137800.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:07 Heat of formation + Delta-G solvation = -67.108453 kcal Electronic energy + Delta-G solvation = -18048.868839 eV Core-core repulsion = 15174.904445 eV Total energy + Delta-G solvation = -2873.964394 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.13752 -38.52605 -36.05938 -35.01191 -32.70802 -31.59490 -29.76643 -29.21321 -25.12690 -24.61057 -23.07227 -21.40430 -19.19601 -18.83287 -17.36419 -16.60052 -16.20474 -15.79996 -15.00477 -14.42216 -14.33928 -14.05437 -13.75142 -13.25249 -12.99281 -12.79344 -12.35187 -11.91118 -11.60816 -11.46774 -11.17854 -11.06944 -10.90051 -10.56560 -10.49843 -10.44274 -10.18835 -9.69533 -9.68182 -8.93039 -8.90657 -8.34026 -7.89575 -6.46235 -3.90872 2.90880 3.05249 3.18861 3.23948 3.49408 3.78241 4.01789 4.57230 4.89347 4.95311 5.00179 5.30158 5.37283 5.60999 5.63981 5.78719 6.10868 6.17431 6.22525 6.41427 6.56243 6.61464 6.73913 6.84775 6.93891 7.01743 7.27663 7.38273 7.50728 7.66117 7.81884 8.36248 8.43764 9.00073 9.47015 9.87404 10.49348 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.022352 B = 0.009368 C = 0.007274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.401129 B = 2988.216721 C = 3848.356879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.133 3.867 3 N -0.433 5.433 4 C -0.343 4.343 5 H 0.102 0.898 6 C 0.042 3.958 7 N -0.848 5.848 8 Si 0.908 3.092 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.453 3.547 13 O -0.612 6.612 14 C -0.095 4.095 15 H 0.096 0.904 16 C -0.115 4.115 17 C 0.111 3.889 18 N -0.722 5.722 19 C 0.527 3.473 20 O -0.566 6.566 21 C -0.120 4.120 22 H 0.094 0.906 23 H 0.022 0.978 24 H 0.031 0.969 25 H 0.039 0.961 26 H 0.090 0.910 27 H 0.269 0.731 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.394 0.606 33 H 0.100 0.900 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.541 6.493 -3.904 7.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.010 3.990 3 N -0.149 5.149 4 C -0.470 4.470 5 H 0.120 0.880 6 C -0.164 4.164 7 N -0.485 5.485 8 Si 0.734 3.266 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.192 1.192 12 C 0.241 3.759 13 O -0.500 6.500 14 C -0.116 4.116 15 H 0.114 0.886 16 C -0.153 4.153 17 C -0.013 4.013 18 N -0.374 5.374 19 C 0.315 3.685 20 O -0.446 6.446 21 C -0.160 4.160 22 H 0.112 0.888 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.109 0.891 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.228 0.772 33 H 0.118 0.882 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.786 5.922 -4.011 7.196 hybrid contribution 0.324 0.541 0.898 1.097 sum 1.110 6.463 -3.113 7.259 Atomic orbital electron populations 1.22066 0.96635 0.99488 1.01810 1.21258 0.94659 0.82933 1.00118 1.43889 1.54461 1.11750 1.04817 1.19650 1.43706 1.00952 0.82672 0.88020 1.25168 0.95263 0.96634 0.99337 1.70203 1.25288 1.25650 1.27357 0.86234 0.80689 0.78303 0.81365 1.20365 1.20625 1.19173 1.19664 0.84834 0.87624 0.83808 1.90525 1.60069 1.67974 1.31388 1.21166 0.94648 0.96745 0.99067 0.88608 1.21713 1.02813 0.92504 0.98247 1.21488 0.81377 0.98356 1.00119 1.45485 1.13212 1.16616 1.62061 1.20314 0.85625 0.86876 0.75687 1.90716 1.18695 1.82482 1.52688 1.21538 0.95290 0.93479 1.05729 0.88755 0.95906 0.94961 0.94244 0.89147 0.92044 0.90464 0.89716 0.91619 0.90763 0.77154 0.88232 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.66 37.16 0.36 -2.88 16 2 C 0.13 3.19 5.36 -4.04 -0.02 3.17 16 3 N -0.43 -10.45 2.62 -114.81 -0.30 -10.75 16 4 C -0.34 -8.21 9.21 -14.93 -0.14 -8.34 16 5 H 0.10 2.30 5.90 -52.49 -0.31 1.99 16 6 C 0.04 0.99 4.97 -17.47 -0.09 0.90 16 7 N -0.85 -20.56 8.14 55.50 0.45 -20.11 16 8 Si 0.91 18.74 29.63 -169.99 -5.04 13.71 16 9 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 12 C 0.45 10.34 6.72 -10.99 -0.07 10.26 16 13 O -0.61 -15.42 15.86 5.55 0.09 -15.33 16 14 C -0.09 -1.73 1.80 -91.55 -0.16 -1.89 16 15 H 0.10 1.75 6.27 -51.93 -0.33 1.43 16 16 C -0.11 -1.71 4.76 -26.50 -0.13 -1.84 16 17 C 0.11 1.26 7.17 -4.40 -0.03 1.23 16 18 N -0.72 -9.54 5.45 -61.30 -0.33 -9.88 16 19 C 0.53 8.97 7.71 -11.87 -0.09 8.87 16 20 O -0.57 -11.49 17.78 5.56 0.10 -11.39 16 21 C -0.12 -2.13 5.34 -28.10 -0.15 -2.28 16 22 H 0.09 2.31 6.02 -51.93 -0.31 2.00 16 23 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.95 7.42 -51.93 -0.39 0.56 16 26 H 0.09 2.24 5.99 -51.93 -0.31 1.93 16 27 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 28 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.39 4.45 8.80 -40.82 -0.36 4.09 16 33 H 0.10 1.78 8.09 -51.93 -0.42 1.36 16 34 H 0.11 2.06 8.14 -51.93 -0.42 1.63 16 LS Contribution 277.24 15.07 4.18 4.18 Total: -1.00 -29.09 277.24 -5.89 -34.98 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -4.51 Total: 7.39 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -0.52 Total: 7.20 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: -0.18 Total: -40.74 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: 0.19 Total: -26.72 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.04 Total: 13.71 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.09 -5.89 -34.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132137800.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.125 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds