Wall clock time and date at job start Sun Mar 29 2020 22:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46858 * 2 1 4 4 C 1.37096 * 120.00444 * 89.92154 * 3 2 1 5 5 H 1.08009 * 119.99599 * 321.37877 * 4 3 2 6 6 C 1.38953 * 120.00376 * 141.37650 * 4 3 2 7 7 N 1.31408 * 119.99796 * 332.27173 * 6 4 3 8 8 Si 1.86792 * 120.00017 * 152.27387 * 6 4 3 9 9 H 1.48497 * 109.47267 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47252 * 119.99959 * 8 6 4 11 11 H 1.48504 * 109.47313 * 239.99909 * 8 6 4 12 12 C 1.34780 * 119.99776 * 269.91879 * 3 2 1 13 13 O 1.21294 * 119.99798 * 186.60737 * 12 3 2 14 14 C 1.50700 * 120.00048 * 6.60554 * 12 3 2 15 15 H 1.08997 * 109.66966 * 35.58659 * 14 12 3 16 16 C 1.53344 * 109.67098 * 156.08500 * 14 12 3 17 17 C 1.52926 * 108.66490 * 187.24308 * 16 14 12 18 18 N 1.45756 * 110.50802 * 309.27408 * 17 16 14 19 19 C 1.33358 * 124.10216 * 19.08451 * 18 17 16 20 20 O 1.21279 * 118.23800 * 177.73389 * 19 18 17 21 21 C 1.50170 * 123.50893 * 357.76147 * 19 18 17 22 22 H 1.09003 * 109.46793 * 60.00674 * 1 2 3 23 23 H 1.08997 * 109.47368 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47534 * 300.00642 * 1 2 3 25 25 H 1.08997 * 109.47550 * 239.99899 * 2 1 3 26 26 H 1.09003 * 109.46793 * 119.99326 * 2 1 3 27 27 H 0.97004 * 120.00026 * 357.90307 * 7 6 4 28 28 H 1.09001 * 109.60417 * 307.01746 * 16 14 12 29 29 H 1.08993 * 109.60489 * 67.51107 * 16 14 12 30 30 H 1.08999 * 109.29688 * 188.95112 * 17 16 14 31 31 H 1.08998 * 109.12015 * 69.48053 * 17 16 14 32 32 H 0.96998 * 117.94624 * 199.06613 * 18 17 16 33 33 H 1.09000 * 109.39834 * 257.44601 * 21 19 18 34 34 H 1.09000 * 109.33343 * 137.66687 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2452 2.0281 1.1872 5 1 1.5727 1.8810 2.0195 6 6 3.3404 2.8730 1.3199 7 7 4.4185 2.6697 0.5966 8 14 3.2801 4.2978 2.5263 9 1 1.9641 4.3086 3.2142 10 1 4.3621 4.1417 3.5313 11 1 3.4663 5.5757 1.7930 12 6 2.2444 2.0160 -1.1673 13 8 2.7606 3.1136 -1.1706 14 6 1.8560 1.3620 -2.4682 15 1 0.9359 0.7936 -2.3327 16 6 1.6463 2.4354 -3.5431 17 6 1.0799 1.7681 -4.7971 18 7 1.8889 0.6150 -5.1716 19 6 2.7263 -0.0114 -4.3440 20 8 3.3171 -0.9872 -4.7557 21 6 2.9763 0.4267 -2.9295 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 4.4614 1.9120 -0.0076 28 1 0.9443 3.1855 -3.1788 29 1 2.5998 2.9075 -3.7793 30 1 1.0757 2.4866 -5.6168 31 1 0.0589 1.4425 -4.5982 32 1 1.8133 0.2821 -6.0795 33 1 3.9306 0.9507 -2.8761 34 1 3.0073 -0.4487 -2.2808 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132137991.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:09 Heat of formation + Delta-G solvation = -95.528110 kcal Electronic energy + Delta-G solvation = -18257.626531 eV Core-core repulsion = 15382.429769 eV Total energy + Delta-G solvation = -2875.196762 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.69108 -40.29013 -37.45550 -36.49480 -34.73561 -33.44816 -30.85203 -30.71123 -27.24480 -25.71745 -24.23861 -23.58469 -21.17479 -20.13532 -18.99793 -18.38755 -17.80097 -17.20684 -16.60289 -16.29026 -15.79768 -15.57453 -15.21316 -14.80647 -14.67883 -14.55396 -14.21755 -13.65449 -13.32356 -12.91854 -12.83750 -12.63157 -12.60429 -12.16259 -11.99595 -11.92412 -11.91022 -11.69811 -11.22624 -10.72450 -10.11239 -9.96397 -9.40560 -8.57244 -5.98924 1.47021 1.51727 1.63526 1.76989 2.11254 2.30903 2.48674 2.94644 3.28538 3.51753 3.70243 3.74361 3.79953 4.08505 4.21043 4.28537 4.36940 4.48788 4.51001 4.66990 4.76018 4.82271 4.96592 5.01745 5.04235 5.23699 5.37303 5.77244 5.81165 6.19742 6.20482 6.87973 7.11740 7.18468 7.57116 8.18230 8.72121 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.030809 B = 0.008013 C = 0.007514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.605760 B = 3493.634820 C = 3725.485221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.090 3.910 3 N -0.468 5.468 4 C -0.452 4.452 5 H 0.071 0.929 6 C -0.009 4.009 7 N -0.866 5.866 8 Si 1.120 2.880 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.295 1.295 12 C 0.440 3.560 13 O -0.588 6.588 14 C -0.092 4.092 15 H 0.111 0.889 16 C -0.114 4.114 17 C 0.118 3.882 18 N -0.703 5.703 19 C 0.532 3.468 20 O -0.601 6.601 21 C -0.120 4.120 22 H 0.058 0.942 23 H 0.087 0.913 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.255 0.745 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.411 0.589 33 H 0.079 0.921 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.606 -3.699 -8.500 14.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.033 4.033 3 N -0.190 5.190 4 C -0.579 4.579 5 H 0.089 0.911 6 C -0.216 4.216 7 N -0.498 5.498 8 Si 0.942 3.058 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.222 1.222 12 C 0.230 3.770 13 O -0.471 6.471 14 C -0.114 4.114 15 H 0.129 0.871 16 C -0.152 4.152 17 C -0.005 4.005 18 N -0.354 5.354 19 C 0.319 3.681 20 O -0.483 6.483 21 C -0.161 4.161 22 H 0.077 0.923 23 H 0.106 0.894 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.131 0.869 31 H 0.114 0.886 32 H 0.248 0.752 33 H 0.098 0.902 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.203 -2.307 -7.887 12.338 hybrid contribution -0.424 -1.390 -0.621 1.580 sum -9.627 -3.697 -8.508 13.369 Atomic orbital electron populations 1.22076 0.94458 1.02808 1.01777 1.21790 0.95971 0.83700 1.01830 1.43805 1.59253 1.11141 1.04772 1.20146 1.13415 1.31414 0.92905 0.91084 1.27377 0.90292 1.02474 1.01500 1.70625 1.27055 1.29161 1.22954 0.82881 0.76689 0.72842 0.73345 1.18861 1.20370 1.22177 1.20848 0.83845 0.86459 0.85898 1.90612 1.45831 1.23410 1.87197 1.21362 0.99435 0.97480 0.93148 0.87108 1.21656 1.02534 0.97165 0.93837 1.21636 0.94580 0.87039 0.97286 1.45362 1.42448 1.32282 1.15301 1.19890 0.78355 0.81953 0.87909 1.90716 1.51066 1.29077 1.77448 1.21537 1.00069 1.00880 0.93591 0.92288 0.89375 0.93784 0.90780 0.91987 0.93584 0.89387 0.92563 0.86887 0.88577 0.75222 0.90227 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 10.07 71.98 0.72 -3.70 16 2 C 0.09 3.30 5.70 86.38 0.49 3.79 16 3 N -0.47 -22.56 2.33 -635.52 -1.48 -24.04 16 4 C -0.45 -25.00 9.24 84.04 0.78 -24.22 16 5 H 0.07 3.84 7.97 -2.91 -0.02 3.82 16 6 C -0.01 -0.51 4.07 84.93 0.35 -0.17 16 7 N -0.87 -54.25 12.14 21.66 0.26 -53.99 16 8 Si 1.12 52.31 30.00 68.60 2.06 54.37 16 9 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 12 C 0.44 20.99 5.72 87.66 0.50 21.49 16 13 O -0.59 -34.03 13.40 -3.07 -0.04 -34.07 16 14 C -0.09 -3.12 1.74 -11.40 -0.02 -3.14 16 15 H 0.11 3.15 5.75 -2.39 -0.01 3.14 16 16 C -0.11 -3.20 4.72 30.68 0.14 -3.06 16 17 C 0.12 2.04 7.17 86.49 0.62 2.66 16 18 N -0.70 -15.27 5.45 -467.31 -2.55 -17.81 16 19 C 0.53 16.47 7.71 87.71 0.68 17.15 16 20 O -0.60 -22.83 17.78 -3.03 -0.05 -22.88 16 21 C -0.12 -4.12 5.16 29.70 0.15 -3.96 16 22 H 0.06 1.59 6.75 -2.39 -0.02 1.57 16 23 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 2.41 4.97 -2.39 -0.01 2.40 16 26 H 0.06 2.34 8.04 -2.39 -0.02 2.32 16 27 H 0.25 16.29 7.31 -92.71 -0.68 15.61 16 28 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 29 H 0.06 1.86 8.09 -2.39 -0.02 1.84 16 30 H 0.11 1.31 8.14 -2.39 -0.02 1.30 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.41 7.15 8.80 -92.71 -0.82 6.33 16 33 H 0.08 3.16 8.09 -2.39 -0.02 3.14 16 34 H 0.10 3.40 6.26 -2.39 -0.01 3.38 16 Total: -1.00 -78.28 276.45 3.01 -75.27 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.39 Total: 16.32 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 4.42 Total: 6.83 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -3.76 Total: -95.84 kcal Atomic # 8 Polarization: -56.86 SS G_CDS: -0.09 Total: -56.95 kcal Atomic # 14 Polarization: 52.31 SS G_CDS: 2.06 Total: 54.37 kcal Total: -78.28 3.01 -75.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132137991.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.255 kcal (2) G-P(sol) polarization free energy of solvation -78.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds