Wall clock time and date at job start Sun Mar 29 2020 22:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00077 * 2 1 4 4 H 1.48493 * 109.47095 * 270.00249 * 3 2 1 5 5 H 1.48503 * 109.46884 * 29.99981 * 3 2 1 6 6 H 1.48497 * 109.47055 * 149.99701 * 3 2 1 7 7 C 1.37872 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00325 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47070 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.46721 * 179.97438 * 10 9 7 12 12 O 1.45208 * 109.47084 * 179.97438 * 11 10 9 13 13 C 1.34226 * 116.99939 * 179.97438 * 12 11 10 14 14 O 1.20825 * 120.00359 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99822 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47238 * 300.00684 * 15 13 12 17 17 C 1.52996 * 109.46947 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47328 * 60.00057 * 17 16 15 19 19 C 1.53001 * 109.46886 * 300.00201 * 18 17 16 20 20 C 1.52996 * 109.47302 * 59.99782 * 19 18 17 21 21 H 0.97005 * 119.99534 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47089 * 59.99108 * 9 7 2 23 23 H 1.09004 * 109.46471 * 299.99455 * 9 7 2 24 24 H 1.09002 * 109.46994 * 59.99709 * 10 9 7 25 25 H 1.08996 * 109.46851 * 299.99762 * 10 9 7 26 26 H 1.09002 * 109.47385 * 60.00241 * 11 10 9 27 27 H 1.09004 * 109.47790 * 299.99676 * 11 10 9 28 28 H 1.09001 * 109.46953 * 60.00296 * 15 13 12 29 29 H 1.09001 * 109.46832 * 299.99686 * 16 15 13 30 30 H 1.09004 * 109.47261 * 59.99705 * 16 15 13 31 31 H 1.08992 * 109.47554 * 299.99696 * 17 16 15 32 32 H 1.09000 * 109.46870 * 179.97438 * 17 16 15 33 33 H 1.08992 * 109.47399 * 179.97438 * 18 17 16 34 34 H 1.09001 * 109.47194 * 59.99524 * 18 17 16 35 35 H 1.09001 * 109.46652 * 299.99655 * 19 18 17 36 36 H 1.09004 * 109.47086 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.46870 * 180.02562 * 20 19 18 38 38 H 1.08992 * 109.47554 * 60.00308 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 8 2.4237 -6.0908 0.0006 13 6 1.9106 -7.3311 0.0016 14 8 0.7127 -7.4894 0.0024 15 6 2.8286 -8.5263 0.0004 16 6 3.7095 -8.4916 -1.2500 17 6 4.6419 -9.7046 -1.2508 18 6 3.8090 -10.9881 -1.2491 19 6 2.9280 -11.0227 0.0013 20 6 1.9956 -9.8097 0.0021 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 2.8719 -3.6043 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 0.8532 -5.0450 -0.8886 27 1 0.8538 -5.0446 0.8914 28 1 3.4587 -8.5013 0.8895 29 1 3.0794 -8.5166 -2.1391 30 1 4.3032 -7.5774 -1.2510 31 1 5.2719 -9.6793 -0.3618 32 1 5.2691 -9.6801 -2.1419 33 1 4.4732 -11.8522 -1.2502 34 1 3.1789 -11.0135 -2.1382 35 1 3.5581 -10.9973 0.8904 36 1 2.3343 -11.9369 0.0023 37 1 1.3684 -9.8341 0.8931 38 1 1.3656 -9.8350 -0.8870 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000141803659.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:34 Heat of formation + Delta-G solvation = -135.714433 kcal Electronic energy + Delta-G solvation = -16920.841444 eV Core-core repulsion = 14147.442416 eV Total energy + Delta-G solvation = -2773.399029 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.50695 -38.23297 -36.31474 -33.98025 -31.89575 -31.27120 -30.97558 -27.13021 -24.42775 -22.99940 -22.72696 -20.74812 -20.32583 -19.77462 -17.36154 -16.65477 -16.30144 -16.03858 -15.09678 -14.51567 -14.47920 -14.38605 -13.93986 -13.46966 -12.82477 -12.67242 -12.44834 -12.17499 -12.05488 -11.83644 -11.49648 -11.38922 -10.96465 -10.91622 -10.70023 -10.63556 -10.62061 -10.35764 -10.34619 -10.12100 -9.70724 -9.47379 -9.15647 -8.38509 -6.03245 -4.06326 2.38829 2.93594 3.31190 3.37292 3.40934 4.39204 4.43337 4.46170 4.54160 4.90263 4.93168 5.08108 5.13560 5.20683 5.25193 5.32675 5.39968 5.56704 5.59966 5.66314 5.78943 5.81002 5.82748 5.90746 5.97596 6.03534 6.07238 6.17576 6.54843 6.55270 6.87863 7.00117 7.60758 7.71901 7.94955 7.99318 8.36413 8.99986 9.57949 11.08226 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.057198 B = 0.003601 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.412080 B = 7773.580345 C = 8131.338767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.067 3.933 12 O -0.357 6.357 13 C 0.459 3.541 14 O -0.513 6.513 15 C -0.079 4.079 16 C -0.113 4.113 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.105 4.105 21 H 0.261 0.739 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.096 -21.130 -1.192 22.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.006 4.006 12 O -0.274 6.274 13 C 0.302 3.698 14 O -0.402 6.402 15 C -0.098 4.098 16 C -0.150 4.150 17 C -0.155 4.155 18 C -0.161 4.161 19 C -0.156 4.156 20 C -0.142 4.142 21 H 0.071 0.929 22 H 0.037 0.963 23 H 0.038 0.962 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.571 -21.005 -1.189 22.359 hybrid contribution 0.157 1.069 0.033 1.081 sum 7.728 -19.936 -1.156 21.412 Atomic orbital electron populations 1.69973 1.06093 1.26750 1.50567 1.25035 0.94886 0.99377 0.95205 0.86539 0.79807 0.83212 0.78134 1.20611 1.21192 1.19799 1.21178 0.93126 0.90694 1.50970 0.92424 1.19056 0.93856 0.90781 0.97666 1.21753 0.99897 0.91046 1.01914 1.23488 0.91267 0.83767 1.02051 1.86498 1.42621 1.15235 1.83011 1.23684 0.88593 0.85111 0.72459 1.90644 1.17125 1.86922 1.45505 1.21085 0.96488 0.90397 1.01871 1.21536 0.97771 0.99586 0.96118 1.21534 0.97622 0.93968 1.02366 1.21591 0.98479 0.97645 0.98370 1.21547 0.97951 0.97703 0.98372 1.21441 0.97303 0.91818 1.03657 0.92895 0.96258 0.96240 0.92181 0.92173 0.91626 0.91612 0.87606 0.91377 0.90202 0.91589 0.91448 0.91911 0.91839 0.91749 0.91525 0.91044 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.29 5.53 -26.74 -0.15 -2.44 16 11 C 0.07 1.28 5.47 37.15 0.20 1.48 16 12 O -0.36 -6.11 10.12 -39.25 -0.40 -6.50 16 13 C 0.46 7.13 7.26 36.01 0.26 7.39 16 14 O -0.51 -9.42 15.73 -18.75 -0.29 -9.72 16 15 C -0.08 -0.87 2.63 -91.77 -0.24 -1.11 16 16 C -0.11 -1.09 5.14 -26.73 -0.14 -1.22 16 17 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 18 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 19 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 20 C -0.10 -1.04 4.50 -26.73 -0.12 -1.16 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 27 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 28 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 38 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 312.16 15.07 4.70 4.70 Total: -1.00 -31.20 312.16 -8.20 -39.40 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -6.72 Total: -4.95 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -1.21 Total: -13.29 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.69 Total: -16.22 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.20 -8.20 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141803659.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.311 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds