Wall clock time and date at job start Sun Mar 29 2020 22:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00077 * 2 1 4 4 H 1.48493 * 109.47095 * 270.00249 * 3 2 1 5 5 H 1.48503 * 109.46884 * 29.99981 * 3 2 1 6 6 H 1.48497 * 109.47055 * 149.99701 * 3 2 1 7 7 C 1.37872 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00325 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47070 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.46721 * 179.97438 * 10 9 7 12 12 O 1.45208 * 109.47084 * 179.97438 * 11 10 9 13 13 C 1.34226 * 116.99939 * 179.97438 * 12 11 10 14 14 O 1.20825 * 120.00359 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99822 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47238 * 300.00684 * 15 13 12 17 17 C 1.52996 * 109.46947 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47328 * 60.00057 * 17 16 15 19 19 C 1.53001 * 109.46886 * 300.00201 * 18 17 16 20 20 C 1.52996 * 109.47302 * 59.99782 * 19 18 17 21 21 H 0.97005 * 119.99534 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47089 * 59.99108 * 9 7 2 23 23 H 1.09004 * 109.46471 * 299.99455 * 9 7 2 24 24 H 1.09002 * 109.46994 * 59.99709 * 10 9 7 25 25 H 1.08996 * 109.46851 * 299.99762 * 10 9 7 26 26 H 1.09002 * 109.47385 * 60.00241 * 11 10 9 27 27 H 1.09004 * 109.47790 * 299.99676 * 11 10 9 28 28 H 1.09001 * 109.46953 * 60.00296 * 15 13 12 29 29 H 1.09001 * 109.46832 * 299.99686 * 16 15 13 30 30 H 1.09004 * 109.47261 * 59.99705 * 16 15 13 31 31 H 1.08992 * 109.47554 * 299.99696 * 17 16 15 32 32 H 1.09000 * 109.46870 * 179.97438 * 17 16 15 33 33 H 1.08992 * 109.47399 * 179.97438 * 18 17 16 34 34 H 1.09001 * 109.47194 * 59.99524 * 18 17 16 35 35 H 1.09001 * 109.46652 * 299.99655 * 19 18 17 36 36 H 1.09004 * 109.47086 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.46870 * 180.02562 * 20 19 18 38 38 H 1.08992 * 109.47554 * 60.00308 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 8 2.4237 -6.0908 0.0006 13 6 1.9106 -7.3311 0.0016 14 8 0.7127 -7.4894 0.0024 15 6 2.8286 -8.5263 0.0004 16 6 3.7095 -8.4916 -1.2500 17 6 4.6419 -9.7046 -1.2508 18 6 3.8090 -10.9881 -1.2491 19 6 2.9280 -11.0227 0.0013 20 6 1.9956 -9.8097 0.0021 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 2.8719 -3.6043 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 0.8532 -5.0450 -0.8886 27 1 0.8538 -5.0446 0.8914 28 1 3.4587 -8.5013 0.8895 29 1 3.0794 -8.5166 -2.1391 30 1 4.3032 -7.5774 -1.2510 31 1 5.2719 -9.6793 -0.3618 32 1 5.2691 -9.6801 -2.1419 33 1 4.4732 -11.8522 -1.2502 34 1 3.1789 -11.0135 -2.1382 35 1 3.5581 -10.9973 0.8904 36 1 2.3343 -11.9369 0.0023 37 1 1.3684 -9.8341 0.8931 38 1 1.3656 -9.8350 -0.8870 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000141803659.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:34 Heat of formation + Delta-G solvation = -151.866461 kcal Electronic energy + Delta-G solvation = -16921.541849 eV Core-core repulsion = 14147.442416 eV Total energy + Delta-G solvation = -2774.099433 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.76111 -39.12130 -37.70201 -35.95451 -33.74112 -32.24581 -31.66732 -29.02801 -25.83066 -24.44408 -23.49635 -22.19321 -21.73548 -20.62875 -18.77799 -18.42285 -17.67035 -17.50032 -16.50495 -16.11338 -15.59954 -15.08086 -14.93689 -14.81128 -14.25480 -13.94456 -13.77350 -13.60861 -13.30329 -13.12593 -12.83121 -12.52100 -12.44134 -12.27142 -12.11023 -12.04961 -11.81892 -11.57467 -11.44810 -11.36957 -11.30163 -11.03290 -11.00446 -10.58629 -8.22914 -6.34849 1.12371 1.40980 1.42782 1.53872 1.65591 2.40831 3.10928 3.48180 3.70650 3.72595 3.96450 4.03664 4.14468 4.23742 4.27625 4.38078 4.39163 4.52248 4.56857 4.71982 4.76947 4.85273 4.95315 5.05542 5.11523 5.15115 5.23610 5.24527 5.32868 5.39897 5.43246 5.51829 5.56136 5.61302 5.78400 6.17462 6.67479 6.81161 7.34876 8.89416 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.057198 B = 0.003601 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.412080 B = 7773.580345 C = 8131.338767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.076 3.924 12 O -0.356 6.356 13 C 0.455 3.545 14 O -0.545 6.545 15 C -0.073 4.073 16 C -0.112 4.112 17 C -0.113 4.113 18 C -0.123 4.123 19 C -0.113 4.113 20 C -0.103 4.103 21 H 0.265 0.735 22 H -0.004 1.004 23 H -0.004 1.004 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.128 0.872 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.373 -21.966 -1.109 24.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.130 4.130 11 C 0.003 3.997 12 O -0.272 6.272 13 C 0.300 3.700 14 O -0.436 6.436 15 C -0.092 4.092 16 C -0.149 4.149 17 C -0.150 4.150 18 C -0.160 4.160 19 C -0.150 4.150 20 C -0.141 4.141 21 H 0.073 0.927 22 H 0.014 0.986 23 H 0.014 0.986 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.145 0.855 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.867 -21.865 -1.109 24.014 hybrid contribution -0.599 1.271 0.003 1.405 sum 9.269 -20.594 -1.106 22.611 Atomic orbital electron populations 1.70110 1.07935 1.27964 1.51431 1.26036 0.95806 1.03611 0.94537 0.85363 0.78647 0.77977 0.78564 1.19677 1.20801 1.18459 1.21627 0.93782 0.91830 1.50939 0.91588 1.18941 0.94278 0.92577 0.95386 1.21448 0.98691 0.90307 1.02581 1.23119 0.91072 0.83985 1.01561 1.86496 1.41906 1.15554 1.83274 1.24741 0.89005 0.85294 0.70966 1.90632 1.18818 1.87099 1.47005 1.21285 0.96062 0.88260 1.03552 1.21560 0.97718 1.00800 0.94842 1.21531 0.97238 0.92783 1.03457 1.21607 0.98536 0.98090 0.97814 1.21537 0.97716 0.96508 0.99242 1.21455 0.97582 0.92543 1.02524 0.92659 0.98595 0.98560 0.91419 0.91412 0.92236 0.92140 0.85457 0.92312 0.90649 0.90439 0.90442 0.90132 0.92380 0.90499 0.90574 0.91963 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.54 -31.06 9.11 25.60 0.23 -30.83 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.09 -3.92 5.53 30.59 0.17 -3.76 16 11 C 0.08 2.94 5.47 71.98 0.39 3.33 16 12 O -0.36 -12.02 10.12 -51.38 -0.52 -12.54 16 13 C 0.46 14.05 7.26 71.24 0.52 14.57 16 14 O -0.55 -20.35 15.73 21.97 0.35 -20.01 16 15 C -0.07 -1.50 2.63 -11.54 -0.03 -1.53 16 16 C -0.11 -1.98 5.14 30.59 0.16 -1.82 16 17 C -0.11 -1.36 5.92 30.59 0.18 -1.18 16 18 C -0.12 -1.38 5.92 30.59 0.18 -1.20 16 19 C -0.11 -1.39 5.92 30.59 0.18 -1.21 16 20 C -0.10 -1.95 4.50 30.59 0.14 -1.81 16 21 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 22 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 23 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 24 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 25 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 27 H 0.06 2.38 8.13 -2.38 -0.02 2.36 16 28 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.41 8.11 -2.38 -0.02 1.39 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 38 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 Total: -1.00 -67.27 312.16 5.87 -61.40 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 1.00 Total: 5.59 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 2.73 Total: -23.59 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.28 Total: -57.06 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.17 Total: -32.55 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -67.27 5.87 -61.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141803659.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.464 kcal (2) G-P(sol) polarization free energy of solvation -67.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds