Wall clock time and date at job start Sun Mar 29 2020 22:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.46931 * 120.63086 * 0.02562 * 4 2 1 6 6 C 1.53622 * 108.54424 * 126.36867 * 5 4 2 7 7 C 1.53036 * 109.24613 * 54.85288 * 6 5 4 8 8 N 1.46496 * 109.46105 * 178.49250 * 7 6 5 9 9 C 1.34773 * 120.00119 * 275.06706 * 8 7 6 10 10 O 1.21689 * 119.99924 * 0.02562 * 9 8 7 11 11 C 1.46375 * 120.00135 * 179.97438 * 9 8 7 12 12 H 1.07994 * 119.99908 * 0.02562 * 11 9 8 13 13 C 1.40054 * 120.00039 * 180.02562 * 11 9 8 14 14 N 1.30677 * 119.99723 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 120.00213 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47181 * 89.99670 * 15 13 11 17 17 H 1.48502 * 109.47195 * 210.00295 * 15 13 11 18 18 H 1.48501 * 109.47016 * 330.00039 * 15 13 11 19 19 C 1.53046 * 109.53689 * 298.51382 * 7 6 5 20 20 C 1.46925 * 120.62933 * 180.27723 * 4 2 1 21 21 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 120.00305 * 1 2 3 23 23 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 24 24 H 1.09000 * 109.58052 * 246.19939 * 5 4 2 25 25 H 1.08995 * 109.58699 * 6.62138 * 5 4 2 26 26 H 1.09003 * 109.63253 * 294.86246 * 6 5 4 27 27 H 1.08998 * 109.43170 * 174.72646 * 6 5 4 28 28 H 1.08996 * 109.44694 * 58.52287 * 7 6 5 29 29 H 0.97001 * 120.00230 * 95.06602 * 8 7 6 30 30 H 0.97001 * 119.99794 * 180.02562 * 14 13 11 31 31 H 1.08997 * 109.49431 * 301.40868 * 19 7 6 32 32 H 1.08999 * 109.52034 * 181.33388 * 19 7 6 33 33 H 1.08994 * 109.58707 * 353.37218 * 20 4 2 34 34 H 1.09001 * 109.58947 * 113.66077 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.4603 -2.4476 0.0114 6 6 1.9738 -3.3025 -1.1571 7 6 3.4946 -3.4372 -1.0535 8 7 3.9854 -4.2815 -2.1454 9 6 3.9857 -5.6226 -2.0124 10 8 3.5778 -6.1323 -0.9854 11 6 4.4755 -6.4663 -3.1037 12 1 4.8371 -6.0140 -4.0153 13 6 4.4753 -7.8600 -2.9656 14 7 4.0373 -8.4072 -1.8627 15 14 5.1011 -8.9366 -4.3579 16 1 6.5579 -9.1687 -4.1879 17 1 4.3866 -10.2383 -4.3367 18 1 4.8561 -8.2587 -5.6563 19 6 4.1389 -2.0523 -1.1506 20 6 3.6500 -1.1833 0.0119 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3633 -0.5139 -0.8900 23 1 -0.3633 -0.5138 0.8900 24 1 1.6419 -2.9648 0.9536 25 1 0.3922 -2.2664 -0.1082 26 1 1.7144 -2.8248 -2.1020 27 1 1.5170 -4.2911 -1.1114 28 1 3.7544 -3.8922 -0.0977 29 1 4.3102 -3.8753 -2.9643 30 1 4.0375 -9.3725 -1.7669 31 1 3.8592 -1.5865 -2.0955 32 1 5.2233 -2.1508 -1.1006 33 1 4.0271 -0.1677 -0.1075 34 1 4.0070 -1.5971 0.9551 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169878593.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:48 Heat of formation + Delta-G solvation = -84.757658 kcal Electronic energy + Delta-G solvation = -17348.135364 eV Core-core repulsion = 14473.405644 eV Total energy + Delta-G solvation = -2874.729721 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.07978 -37.99712 -36.41207 -33.71790 -32.42752 -31.51919 -30.41215 -29.14733 -26.38088 -24.14552 -23.09211 -20.91150 -19.59332 -18.97210 -17.27604 -16.91400 -15.78918 -15.46756 -15.33975 -14.76624 -14.16020 -13.98490 -13.74055 -13.37288 -13.04317 -12.59572 -12.50162 -12.26222 -12.09784 -11.85545 -11.67610 -11.13743 -11.06542 -11.03079 -10.53544 -10.49569 -10.27068 -10.11688 -9.78680 -8.88321 -8.65388 -7.64578 -7.55335 -6.21734 -4.67360 2.62060 3.04736 3.11913 3.19115 3.22201 4.07729 4.53782 4.56265 4.71075 4.91031 5.10951 5.13915 5.23390 5.25827 5.40411 5.46978 5.63742 5.70627 5.78844 5.83352 5.87283 6.03793 6.13721 6.21447 6.41745 6.66210 6.75503 7.40475 7.43143 7.89809 8.07376 8.16235 8.30320 8.99732 9.50232 10.56614 10.75162 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.058172 B = 0.004870 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.214198 B = 5748.497606 C = 5904.542307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.511 3.489 3 O -0.558 6.558 4 N -0.610 5.610 5 C 0.108 3.892 6 C -0.143 4.143 7 C 0.157 3.843 8 N -0.763 5.763 9 C 0.555 3.445 10 O -0.581 6.581 11 C -0.546 4.546 12 H 0.067 0.933 13 C 0.088 3.912 14 N -0.768 5.768 15 Si 0.907 3.093 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.265 1.265 19 C -0.139 4.139 20 C 0.114 3.886 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.380 0.620 30 H 0.268 0.732 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.976 10.954 1.538 12.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.300 3.700 3 O -0.437 6.437 4 N -0.344 5.344 5 C -0.015 4.015 6 C -0.183 4.183 7 C 0.050 3.950 8 N -0.417 5.417 9 C 0.359 3.641 10 O -0.464 6.464 11 C -0.583 4.583 12 H 0.085 0.915 13 C -0.131 4.131 14 N -0.397 5.397 15 Si 0.731 3.269 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.189 1.189 19 C -0.178 4.178 20 C -0.008 4.008 21 H 0.107 0.893 22 H 0.107 0.893 23 H 0.106 0.894 24 H 0.091 0.909 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.211 0.789 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.996 10.935 2.413 12.262 hybrid contribution 0.425 -0.521 -1.156 1.337 sum -4.571 10.413 1.257 11.442 Atomic orbital electron populations 1.21934 0.92075 1.05073 1.04232 1.20787 0.90625 0.83055 0.75508 1.90682 1.70867 1.31192 1.50934 1.48251 1.07205 1.06257 1.72656 1.21939 0.96277 0.83308 0.99960 1.22438 0.98328 1.00349 0.97141 1.20420 0.91481 0.89227 0.93865 1.46201 1.70774 1.07189 1.17518 1.18210 0.78370 0.79195 0.88295 1.90590 1.51847 1.72643 1.31279 1.20901 1.45052 0.90871 1.01511 0.91512 1.25695 0.93231 0.98407 0.95807 1.70018 1.33982 1.11241 1.24441 0.86389 0.79276 0.79349 0.81836 1.19749 1.20460 1.18944 1.22194 1.01132 0.95865 0.98625 1.21558 0.79222 1.01465 0.98594 0.89274 0.89326 0.89428 0.90866 0.89804 0.92092 0.89751 0.90529 0.78914 0.92127 0.91606 0.90333 0.89114 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 8.67 36.01 0.31 -1.25 16 2 C 0.51 6.87 7.81 -10.98 -0.09 6.79 16 3 O -0.56 -9.56 16.50 5.55 0.09 -9.47 16 4 N -0.61 -8.02 2.97 -172.53 -0.51 -8.53 16 5 C 0.11 1.34 6.37 -3.48 -0.02 1.31 16 6 C -0.14 -2.26 5.67 -26.39 -0.15 -2.41 16 7 C 0.16 2.80 2.41 -67.89 -0.16 2.63 16 8 N -0.76 -16.25 5.07 -55.18 -0.28 -16.53 16 9 C 0.56 15.21 7.71 -12.99 -0.10 15.11 16 10 O -0.58 -18.02 14.68 5.20 0.08 -17.94 16 11 C -0.55 -15.10 9.54 -35.63 -0.34 -15.44 16 12 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 13 C 0.09 2.42 5.50 -17.36 -0.10 2.32 16 14 N -0.77 -22.59 11.83 55.55 0.66 -21.93 16 15 Si 0.91 19.82 29.56 -169.99 -5.02 14.80 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 19 C -0.14 -1.99 5.55 -26.63 -0.15 -2.14 16 20 C 0.11 1.53 6.43 -3.73 -0.02 1.51 16 21 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 22 H 0.09 0.69 7.70 -51.93 -0.40 0.29 16 23 H 0.09 0.63 7.93 -51.93 -0.41 0.22 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.08 0.81 5.94 -51.93 -0.31 0.50 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 29 H 0.38 7.23 8.58 -40.82 -0.35 6.88 16 30 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.25 7.00 -51.93 -0.36 0.89 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 285.42 15.07 4.30 4.30 Total: -1.00 -34.72 285.42 -6.24 -40.96 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.73 Total: 5.91 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -0.82 Total: 8.44 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.13 Total: -46.99 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: 0.17 Total: -27.41 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.72 -6.24 -40.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169878593.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.796 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds