Wall clock time and date at job start Sun Mar 29 2020 22:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34769 * 120.00023 * 2 1 4 4 O 1.21280 * 119.99970 * 354.81855 * 3 2 1 5 5 C 1.50702 * 119.99900 * 174.81585 * 3 2 1 6 6 C 1.50696 * 115.55250 * 295.85216 * 5 3 2 7 7 O 1.21287 * 120.00056 * 113.34148 * 6 5 3 8 8 N 1.34775 * 119.99904 * 293.61858 * 6 5 3 9 9 C 1.46495 * 119.99826 * 4.20348 * 8 6 5 10 10 C 1.46497 * 119.99768 * 184.20369 * 8 6 5 11 11 C 1.50703 * 109.47206 * 89.99892 * 10 8 6 12 12 H 1.07996 * 119.99741 * 0.02562 * 11 10 8 13 13 C 1.37873 * 120.00194 * 179.97438 * 11 10 8 14 14 N 1.31514 * 120.00119 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00048 * 0.02562 * 13 11 10 16 16 H 1.48507 * 109.47353 * 89.99707 * 15 13 11 17 17 H 1.48497 * 109.47395 * 209.99512 * 15 13 11 18 18 H 1.48497 * 109.47274 * 329.99809 * 15 13 11 19 19 C 1.53008 * 117.49646 * 81.52463 * 5 3 2 20 20 C 1.53001 * 117.49727 * 150.18066 * 5 3 2 21 21 H 1.08998 * 109.47334 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46935 * 299.99751 * 1 2 3 23 23 H 1.08995 * 109.47207 * 59.99801 * 1 2 3 24 24 H 0.97008 * 119.99640 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47520 * 84.78982 * 9 8 6 26 26 H 1.09004 * 109.47122 * 204.78292 * 9 8 6 27 27 H 1.09000 * 109.47536 * 324.77954 * 9 8 6 28 28 H 1.08996 * 109.47470 * 209.99525 * 10 8 6 29 29 H 1.08994 * 109.47522 * 330.00037 * 10 8 6 30 30 H 0.97004 * 119.99789 * 180.02562 * 14 13 11 31 31 H 1.08994 * 117.49505 * 215.00247 * 19 5 3 32 32 H 1.09003 * 117.49767 * 0.02562 * 19 5 3 33 33 H 1.09004 * 117.49986 * 359.97438 * 20 5 3 34 34 H 1.09002 * 117.49755 * 144.99953 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5362 2.2153 -0.0949 5 6 3.6412 1.1698 0.1179 6 6 4.1925 0.6339 1.4141 7 8 4.8327 -0.3961 1.4210 8 7 3.9692 1.2964 2.5663 9 6 3.1144 2.4861 2.5734 10 6 4.5814 0.8268 3.8117 11 6 5.9265 1.4828 3.9888 12 1 6.2889 2.1802 3.2481 13 6 6.6940 1.1935 5.0971 14 7 7.8676 1.7664 5.2519 15 14 6.0668 -0.0121 6.3787 16 1 6.5066 -1.3854 6.0235 17 1 6.6121 0.3532 7.7107 18 1 4.5833 0.0372 6.4206 19 6 4.4502 0.9105 -1.1547 20 6 4.4004 2.3168 -0.5521 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 1.9500 -0.8401 -0.0004 25 1 2.0712 2.1835 2.6633 26 1 3.3825 3.1211 3.4179 27 1 3.2537 3.0392 1.6445 28 1 3.9378 1.0847 4.6527 29 1 4.7076 -0.2550 3.7691 30 1 8.4077 1.5626 6.0315 31 1 5.3810 0.3524 -1.0543 32 1 3.8957 0.7385 -2.0772 33 1 3.8132 3.0693 -1.0786 34 1 5.2986 2.6838 -0.0554 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171678025.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:43 Heat of formation + Delta-G solvation = -38.038741 kcal Electronic energy + Delta-G solvation = -17780.437797 eV Core-core repulsion = 14907.733961 eV Total energy + Delta-G solvation = -2872.703836 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.51594 -38.59628 -35.95386 -34.99474 -34.55410 -32.52314 -28.75390 -27.59832 -26.02213 -24.42904 -22.48139 -22.24402 -20.61092 -18.96072 -17.39793 -16.94733 -16.06141 -15.81241 -15.54819 -14.96437 -14.75034 -14.33816 -13.90771 -13.50571 -12.88204 -12.70588 -12.45151 -12.36131 -12.33469 -11.98142 -11.52857 -11.48210 -11.09292 -10.87291 -10.60217 -10.44272 -10.14960 -9.93113 -9.57320 -9.22499 -9.10309 -8.62002 -7.76559 -6.11783 -4.11175 2.46722 2.98862 3.14150 3.27055 3.32889 3.34583 3.52266 4.02932 4.36844 4.65401 4.82588 4.89244 4.97283 5.10272 5.21554 5.35784 5.59629 5.63388 5.72613 5.80122 5.92412 5.95855 6.18018 6.25066 6.31681 6.64940 6.88027 7.25545 7.36342 7.56237 8.09472 8.17028 8.42311 8.80754 8.91844 9.47955 11.01412 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.031982 B = 0.007059 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.278041 B = 3965.575874 C = 4245.377024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.730 5.730 3 C 0.563 3.437 4 O -0.531 6.531 5 C -0.195 4.195 6 C 0.550 3.450 7 O -0.533 6.533 8 N -0.585 5.585 9 C 0.082 3.918 10 C 0.214 3.786 11 C -0.531 4.531 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.876 3.124 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.266 1.266 19 C -0.132 4.132 20 C -0.129 4.129 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.407 0.593 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.032 0.968 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.913 -2.327 -10.645 16.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.382 5.382 3 C 0.348 3.652 4 O -0.407 6.407 5 C -0.202 4.202 6 C 0.334 3.666 7 O -0.411 6.411 8 N -0.316 5.316 9 C -0.062 4.062 10 C 0.094 3.906 11 C -0.570 4.570 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.703 3.297 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.191 1.191 19 C -0.169 4.169 20 C -0.166 4.166 21 H 0.094 0.906 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.241 0.759 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.133 0.867 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.888 -2.094 -10.511 16.762 hybrid contribution -0.034 -0.923 0.877 1.273 sum -12.923 -3.017 -9.634 16.398 Atomic orbital electron populations 1.21547 0.79379 1.02288 1.02291 1.45747 1.07729 1.08963 1.75737 1.19166 0.87193 0.83638 0.75202 1.90684 1.69520 1.31419 1.49032 1.21523 0.92048 1.10248 0.96372 1.18813 0.80445 0.84181 0.83129 1.90674 1.40851 1.23717 1.85824 1.47779 1.47478 1.27534 1.08788 1.21749 0.92842 0.88049 1.03552 1.19738 0.94054 0.96382 0.80431 1.21310 1.00530 1.26916 1.08217 0.90660 1.24847 0.94606 0.95731 0.97744 1.69894 1.11028 1.43226 1.29252 0.86850 0.79604 0.82104 0.81146 1.19858 1.20974 1.19072 1.23065 1.01437 0.99379 0.93053 1.23079 1.01283 0.91424 1.00847 0.90597 0.92189 0.92138 0.75895 0.93933 0.90396 0.91213 0.95032 0.94384 0.92495 0.86727 0.87956 0.87146 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 10.71 59.85 0.64 1.48 16 2 N -0.73 -8.89 5.71 -67.08 -0.38 -9.27 16 3 C 0.56 8.47 5.99 -10.99 -0.07 8.41 16 4 O -0.53 -8.98 16.05 5.56 0.09 -8.90 16 5 C -0.20 -3.12 1.21 -156.81 -0.19 -3.31 16 6 C 0.55 11.32 6.93 -10.99 -0.08 11.24 16 7 O -0.53 -12.69 16.28 5.55 0.09 -12.60 16 8 N -0.59 -12.55 2.86 -182.96 -0.52 -13.07 16 9 C 0.08 1.47 9.27 59.84 0.55 2.02 16 10 C 0.21 5.30 4.24 -5.19 -0.02 5.28 16 11 C -0.53 -15.28 9.94 -34.44 -0.34 -15.62 16 12 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 13 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 14 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 15 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 16 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 19 C -0.13 -1.75 9.76 -26.69 -0.26 -2.01 16 20 C -0.13 -1.83 8.88 -26.69 -0.24 -2.06 16 21 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.41 4.49 8.83 -40.82 -0.36 4.13 16 25 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.08 1.38 8.03 -51.93 -0.42 0.97 16 27 H 0.07 1.19 5.80 -51.93 -0.30 0.88 16 28 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 29 H 0.04 0.99 6.79 -51.93 -0.35 0.64 16 30 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.11 1.62 8.02 -51.93 -0.42 1.20 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.11 1.41 7.97 -51.93 -0.41 1.00 16 34 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 293.23 15.07 4.42 4.42 Total: -1.00 -34.33 293.23 -5.05 -39.38 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.76 Total: 2.48 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -0.09 Total: 7.46 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.13 Total: -49.07 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: 0.18 Total: -21.49 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.33 -5.05 -39.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171678025.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.340 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds