Wall clock time and date at job start Sun Mar 29 2020 22:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53005 * 109.47197 * 119.99802 * 2 1 3 5 5 C 1.52997 * 109.47452 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46817 * 300.00239 * 5 4 2 7 7 C 1.53000 * 109.47233 * 60.00194 * 6 5 4 8 8 H 1.09002 * 109.47398 * 59.99826 * 7 6 5 9 9 C 1.50699 * 109.47083 * 179.97438 * 7 6 5 10 10 O 1.20827 * 120.00172 * 119.99679 * 9 7 6 11 11 O 1.34231 * 120.00242 * 300.00144 * 9 7 6 12 12 C 1.45195 * 117.00102 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47080 * 179.97438 * 12 11 9 14 14 C 1.50705 * 109.47243 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99645 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99840 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99588 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00091 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47198 * 89.99615 * 18 16 14 20 20 H 1.48500 * 109.47081 * 209.99718 * 18 16 14 21 21 H 1.48500 * 109.47296 * 329.99381 * 18 16 14 22 22 C 1.52997 * 109.47060 * 299.99657 * 7 6 5 23 23 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47142 * 299.99965 * 1 2 3 25 25 H 1.08996 * 109.46698 * 60.00019 * 1 2 3 26 26 H 1.09001 * 109.46812 * 300.00441 * 4 2 1 27 27 H 1.09002 * 109.46935 * 60.00099 * 4 2 1 28 28 H 1.09002 * 109.46695 * 59.99734 * 5 4 2 29 29 H 1.08993 * 109.47194 * 179.97438 * 5 4 2 30 30 H 1.08992 * 109.47063 * 299.99823 * 6 5 4 31 31 H 1.09004 * 109.46733 * 179.97438 * 6 5 4 32 32 H 1.09009 * 109.46817 * 299.99214 * 12 11 9 33 33 H 1.09000 * 109.47771 * 59.99189 * 12 11 9 34 34 H 1.08999 * 109.46966 * 299.99480 * 13 12 11 35 35 H 1.09004 * 109.46961 * 59.99657 * 13 12 11 36 36 H 0.96995 * 119.99460 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.47853 * 180.02562 * 22 7 6 38 38 H 1.09002 * 109.47153 * 300.00319 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 6 4.0805 -1.4416 0.0004 7 6 3.5706 -0.7203 -1.2488 8 1 3.9336 0.3075 -1.2486 9 6 4.0739 -1.4300 -2.4793 10 8 3.2895 -1.8896 -3.2751 11 8 5.3938 -1.5518 -2.6912 12 6 5.8064 -2.2468 -3.8973 13 6 7.3344 -2.2854 -3.9663 14 6 7.7628 -3.0074 -5.2179 15 1 7.0194 -3.3991 -5.8964 16 6 9.1035 -3.1669 -5.4971 17 7 9.4772 -3.7965 -6.5896 18 14 10.3890 -2.4887 -4.3237 19 1 10.7310 -3.5218 -3.3132 20 1 11.6087 -2.1187 -5.0858 21 1 9.8493 -1.2863 -3.6393 22 6 2.0406 -0.7208 -1.2492 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.6766 -0.2074 2.1392 27 1 1.6767 -1.7489 1.2493 28 1 3.9329 0.3071 1.2498 29 1 3.9333 -1.2341 2.1399 30 1 3.7176 -2.4693 0.0002 31 1 5.1706 -1.4408 0.0005 32 1 5.4173 -3.2650 -3.8811 33 1 5.4168 -1.7229 -4.7701 34 1 7.7232 -1.2673 -3.9827 35 1 7.7244 -2.8093 -3.0935 36 1 10.4205 -3.9090 -6.7858 37 1 1.6772 -0.2074 -2.1394 38 1 1.6776 -1.7486 -1.2494 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173186913.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:38 Heat of formation + Delta-G solvation = -148.435776 kcal Electronic energy + Delta-G solvation = -17239.917137 eV Core-core repulsion = 14465.966469 eV Total energy + Delta-G solvation = -2773.950667 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.74820 -39.41965 -37.66277 -35.42178 -33.79998 -32.76354 -31.96293 -27.60417 -27.13945 -24.98595 -22.71646 -22.58459 -21.53835 -20.66733 -19.21284 -18.26894 -17.56772 -17.37427 -16.32157 -16.01254 -15.53872 -15.32827 -14.95273 -14.84993 -14.40124 -14.19757 -13.71024 -13.31516 -13.24653 -13.14537 -12.73530 -12.61789 -12.49211 -12.29526 -12.18735 -11.88387 -11.82264 -11.63652 -11.54442 -11.47030 -11.35445 -11.05634 -10.94934 -10.82840 -8.36130 -6.44817 1.15222 1.37375 1.39323 1.52156 1.71736 2.33422 2.98641 3.50509 3.67295 3.70618 4.08556 4.10792 4.14473 4.17455 4.22470 4.35233 4.46855 4.53857 4.59623 4.67829 4.78634 4.85392 4.98216 5.03541 5.07996 5.15594 5.18094 5.26177 5.29808 5.34920 5.38577 5.42590 5.48948 5.55930 5.61424 6.13589 6.61123 6.70966 7.20443 8.80158 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.047011 B = 0.004398 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.460986 B = 6365.354590 C = 6816.716814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 H 0.084 0.916 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.112 4.112 7 C -0.072 4.072 8 H 0.127 0.873 9 C 0.454 3.546 10 O -0.547 6.547 11 O -0.359 6.359 12 C 0.092 3.908 13 C -0.002 4.002 14 C -0.545 4.545 15 H 0.033 0.967 16 C 0.011 3.989 17 N -0.945 5.945 18 Si 0.956 3.044 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.244 1.244 22 C -0.096 4.096 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.036 0.964 35 H 0.035 0.965 36 H 0.271 0.729 37 H 0.060 0.940 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.918 10.248 20.062 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 H 0.102 0.898 4 C -0.153 4.153 5 C -0.149 4.149 6 C -0.149 4.149 7 C -0.091 4.091 8 H 0.145 0.855 9 C 0.299 3.701 10 O -0.437 6.437 11 O -0.275 6.275 12 C 0.018 3.982 13 C -0.039 4.039 14 C -0.583 4.583 15 H 0.051 0.949 16 C -0.187 4.187 17 N -0.584 5.584 18 Si 0.778 3.222 19 H -0.187 1.187 20 H -0.205 1.205 21 H -0.167 1.167 22 C -0.134 4.134 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.981 10.033 19.694 26.153 hybrid contribution 0.588 -0.451 -0.805 1.094 sum -13.393 9.582 18.889 25.059 Atomic orbital electron populations 1.21810 0.94367 1.01891 1.02294 1.21136 0.96139 0.99870 0.93306 0.89807 1.21658 0.95229 1.00765 0.97671 1.21522 0.95757 1.01364 0.96225 1.21564 1.01463 0.99123 0.92780 1.21268 0.97621 1.01151 0.89049 0.85495 1.24749 0.80260 0.76904 0.88229 1.90620 1.57531 1.47364 1.48197 1.86479 1.26091 1.70362 1.44603 1.22929 0.96924 0.95011 0.83311 1.19452 0.90155 0.97897 0.96423 1.21126 0.93043 1.37311 1.06807 0.94862 1.25983 1.01012 0.94564 0.97121 1.70047 1.17619 1.43340 1.27413 0.85572 0.77529 0.80311 0.78765 1.18672 1.20505 1.16693 1.21505 0.91102 1.01540 0.99243 0.93092 0.91104 0.92850 0.90009 0.92370 0.90390 0.90254 0.92331 0.90697 0.92783 0.92732 0.94568 0.94674 0.91996 0.92120 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.20 71.98 0.66 -1.22 16 2 C -0.09 -1.22 2.72 -10.79 -0.03 -1.25 16 3 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 4 C -0.12 -1.44 5.20 30.60 0.16 -1.28 16 5 C -0.11 -1.46 5.92 30.59 0.18 -1.28 16 6 C -0.11 -2.17 5.14 30.60 0.16 -2.01 16 7 C -0.07 -1.64 2.63 -11.54 -0.03 -1.67 16 8 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 9 C 0.45 15.36 7.26 71.24 0.52 15.88 16 10 O -0.55 -22.02 15.73 21.96 0.35 -21.68 16 11 O -0.36 -13.57 10.12 -51.42 -0.52 -14.09 16 12 C 0.09 4.06 5.40 71.98 0.39 4.45 16 13 C 0.00 -0.09 4.42 29.85 0.13 0.04 16 14 C -0.55 -32.05 9.66 25.60 0.25 -31.80 16 15 H 0.03 2.16 7.99 -2.91 -0.02 2.13 16 16 C 0.01 0.65 5.47 84.65 0.46 1.12 16 17 N -0.94 -59.19 13.96 21.45 0.30 -58.89 16 18 Si 0.96 43.54 27.47 68.60 1.88 45.42 16 19 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 22 C -0.10 -2.00 3.78 30.59 0.12 -1.88 16 23 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.54 8.11 -2.39 -0.02 1.52 16 32 H 0.05 2.46 8.13 -2.38 -0.02 2.44 16 33 H 0.05 2.48 8.13 -2.39 -0.02 2.46 16 34 H 0.04 1.69 7.20 -2.39 -0.02 1.67 16 35 H 0.03 1.62 7.57 -2.39 -0.02 1.60 16 36 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 38 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 Total: -1.00 -68.69 307.90 5.92 -62.77 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 0.94 Total: 7.37 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 2.96 Total: -20.90 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.30 Total: -58.89 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.18 Total: -35.77 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Total: -68.69 5.92 -62.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173186913.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.667 kcal (2) G-P(sol) polarization free energy of solvation -68.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds