Wall clock time and date at job start Sun Mar 29 2020 22:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 115.54973 * 2 1 4 4 C 1.53003 * 117.49718 * 145.66420 * 2 1 3 5 5 C 1.50707 * 117.49839 * 359.97438 * 4 2 1 6 6 O 1.20830 * 119.99843 * 149.47735 * 5 4 2 7 7 O 1.34228 * 119.99926 * 329.47496 * 5 4 2 8 8 C 1.45198 * 116.99775 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47225 * 180.02562 * 8 7 5 10 10 C 1.50691 * 109.47389 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99895 * 359.97438 * 10 9 8 12 12 C 1.37885 * 120.00147 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99687 * 179.97438 * 12 10 9 14 14 Si 1.86791 * 119.99869 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.47025 * 90.00492 * 14 12 10 16 16 H 1.48496 * 109.47342 * 210.00171 * 14 12 10 17 17 H 1.48494 * 109.47425 * 330.00590 * 14 12 10 18 18 C 1.52991 * 60.03170 * 107.48132 * 4 2 1 19 19 C 1.52999 * 117.50121 * 107.50297 * 18 4 2 20 20 C 1.53007 * 117.50057 * 252.52300 * 18 4 2 21 21 H 1.08994 * 109.46833 * 320.84452 * 1 2 3 22 22 H 1.08999 * 109.46742 * 80.84528 * 1 2 3 23 23 H 1.08997 * 109.47158 * 200.84105 * 1 2 3 24 24 H 1.09008 * 109.47662 * 154.27680 * 3 2 1 25 25 H 1.09002 * 109.47494 * 274.27485 * 3 2 1 26 26 H 1.09003 * 109.47342 * 34.27366 * 3 2 1 27 27 H 1.08996 * 117.50075 * 214.98537 * 4 2 1 28 28 H 1.09000 * 109.47657 * 300.00158 * 8 7 5 29 29 H 1.08997 * 109.46861 * 60.00286 * 8 7 5 30 30 H 1.09005 * 109.47223 * 300.00718 * 9 8 7 31 31 H 1.09002 * 109.46798 * 59.99923 * 9 8 7 32 32 H 0.97001 * 119.99401 * 179.97438 * 13 12 10 33 33 H 1.08994 * 109.47587 * 111.39465 * 19 18 4 34 34 H 1.09008 * 109.46912 * 231.39258 * 19 18 4 35 35 H 1.09007 * 109.46949 * 351.38905 * 19 18 4 36 36 H 1.08992 * 109.46869 * 8.60567 * 20 18 4 37 37 H 1.08999 * 109.46989 * 128.60658 * 20 18 4 38 38 H 1.09000 * 109.46861 * 248.60731 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2365 -1.1207 0.7655 5 6 1.3720 -2.1397 1.4623 6 8 1.7636 -3.2751 1.5943 7 8 0.1670 -1.7859 1.9362 8 6 -0.6114 -2.8193 2.5954 9 6 -1.9444 -2.2327 3.0644 10 6 -2.7520 -3.3050 3.7490 11 1 -2.3545 -4.3050 3.8402 12 6 -3.9989 -3.0097 4.2582 13 7 -4.7038 -3.9457 4.8553 14 14 -4.6867 -1.2802 4.0998 15 1 -5.4512 -1.1657 2.8318 16 1 -5.5862 -0.9983 5.2472 17 1 -3.5697 -0.3018 4.0945 18 6 2.2368 -1.1222 -0.7644 19 6 3.5495 -0.7782 -1.4710 20 6 1.3589 -2.1578 -1.4701 21 1 -0.3633 0.7969 0.6489 22 1 -0.3633 0.1635 -1.0146 23 1 -0.3633 -0.9604 0.3656 24 1 3.1820 1.3089 0.4460 25 1 2.2775 1.7412 -1.0248 26 1 1.5804 2.0744 0.5787 27 1 3.1715 -0.8747 1.2688 28 1 -0.7994 -3.6342 1.8964 29 1 -0.0583 -3.1981 3.4548 30 1 -1.7568 -1.4175 3.7633 31 1 -2.4972 -1.8541 2.2046 32 1 -5.5809 -3.7378 5.2137 33 1 3.9370 -1.6662 -1.9703 34 1 3.3710 0.0045 -2.2084 35 1 4.2759 -0.4277 -0.7376 36 1 0.7296 -2.6611 -0.7362 37 1 0.7298 -1.6589 -2.2072 38 1 1.9922 -2.8910 -1.9695 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173578669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:23 Heat of formation + Delta-G solvation = -81.756432 kcal Electronic energy + Delta-G solvation = -17762.377270 eV Core-core repulsion = 14991.318036 eV Total energy + Delta-G solvation = -2771.059234 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.76457 -38.57156 -36.15997 -33.30349 -31.30794 -30.78161 -28.86842 -28.28625 -26.36701 -25.29917 -22.81547 -20.65837 -19.78905 -17.99057 -17.19971 -16.49342 -16.38102 -15.86138 -14.84921 -14.45409 -14.23096 -13.68939 -13.51440 -13.11315 -12.74674 -12.66261 -12.60589 -12.44333 -12.33049 -12.10321 -11.88925 -11.73607 -11.42028 -11.25758 -10.91254 -10.66412 -10.55993 -10.00602 -9.94986 -9.83443 -9.59212 -9.43581 -9.31601 -8.62648 -6.13240 -4.14293 2.43816 3.03953 3.27151 3.34695 3.39060 3.48740 4.36742 4.38156 4.45069 4.58998 4.87441 5.02385 5.20402 5.30803 5.35728 5.42522 5.55251 5.58613 5.70293 5.73943 5.75966 5.87123 5.91086 5.95020 5.96538 5.99771 6.00288 6.14097 6.21073 6.44774 6.59740 6.82610 7.18803 7.22491 7.62531 8.17519 8.39731 8.88703 9.46419 10.99440 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.035054 B = 0.005650 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.573021 B = 4954.985966 C = 5381.271562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 C -0.114 4.114 4 C -0.154 4.154 5 C 0.489 3.511 6 O -0.511 6.511 7 O -0.349 6.349 8 C 0.076 3.924 9 C -0.008 4.008 10 C -0.528 4.528 11 H 0.075 0.925 12 C 0.073 3.927 13 N -0.897 5.897 14 Si 0.881 3.119 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.263 1.263 18 C -0.093 4.093 19 C -0.113 4.113 20 C -0.121 4.121 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.137 0.863 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.028 0.972 31 H 0.023 0.977 32 H 0.266 0.734 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.962 10.649 -12.647 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.097 4.097 3 C -0.171 4.171 4 C -0.172 4.172 5 C 0.332 3.668 6 O -0.400 6.400 7 O -0.265 6.265 8 C 0.004 3.996 9 C -0.045 4.045 10 C -0.565 4.565 11 H 0.093 0.907 12 C -0.130 4.130 13 N -0.535 5.535 14 Si 0.707 3.293 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.187 1.187 18 C -0.094 4.094 19 C -0.170 4.170 20 C -0.178 4.178 21 H 0.083 0.917 22 H 0.074 0.926 23 H 0.106 0.894 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.155 0.845 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.855 10.252 -12.483 21.281 hybrid contribution -0.400 0.566 0.230 0.730 sum 13.455 10.817 -12.253 21.170 Atomic orbital electron populations 1.21744 0.90643 1.05150 1.01365 1.21826 0.95928 0.90693 1.01218 1.21354 0.99931 0.93860 1.01946 1.22522 1.00409 0.99623 0.94683 1.22448 0.80919 0.87553 0.75887 1.90644 1.73098 1.21501 1.54743 1.86621 1.28210 1.44675 1.67031 1.23404 0.92081 0.88587 0.95570 1.19607 0.90183 0.97931 0.96773 1.20856 1.01318 0.97071 1.37301 0.90696 1.24934 0.96473 0.97260 0.94307 1.69898 1.12377 1.33152 1.38100 0.86759 0.79340 0.85214 0.77951 1.20051 1.21180 1.18734 1.21793 0.98517 0.99449 0.89596 1.21348 0.93866 1.01732 1.00004 1.21421 0.98862 0.97070 1.00407 0.91689 0.92555 0.89373 0.92424 0.91912 0.91677 0.84502 0.91826 0.91764 0.95400 0.95865 0.92443 0.91852 0.91624 0.92153 0.92337 0.91470 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 8.16 37.16 0.30 -1.41 16 2 C -0.10 -1.11 2.70 -154.47 -0.42 -1.52 16 3 C -0.11 -1.01 8.88 37.15 0.33 -0.68 16 4 C -0.15 -2.03 5.55 -91.77 -0.51 -2.54 16 5 C 0.49 8.57 5.27 36.01 0.19 8.76 16 6 O -0.51 -10.40 16.84 -18.75 -0.32 -10.72 16 7 O -0.35 -6.60 6.91 -39.25 -0.27 -6.87 16 8 C 0.08 1.64 5.40 37.16 0.20 1.84 16 9 C -0.01 -0.18 4.42 -27.89 -0.12 -0.30 16 10 C -0.53 -15.03 9.66 -34.44 -0.33 -15.36 16 11 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 12 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 13 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 14 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 18 C -0.09 -1.04 2.70 -154.47 -0.42 -1.46 16 19 C -0.11 -0.94 8.88 37.16 0.33 -0.61 16 20 C -0.12 -1.43 8.70 37.16 0.32 -1.10 16 21 H 0.06 0.83 8.00 -51.93 -0.42 0.41 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.09 1.37 4.41 -51.93 -0.23 1.14 16 24 H 0.06 0.45 7.78 -51.92 -0.40 0.05 16 25 H 0.06 0.48 8.03 -51.93 -0.42 0.06 16 26 H 0.06 0.57 7.98 -51.93 -0.41 0.16 16 27 H 0.14 1.57 7.96 -51.93 -0.41 1.15 16 28 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 29 H 0.06 1.41 8.13 -51.93 -0.42 0.99 16 30 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 31 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 32 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.06 0.51 7.92 -51.93 -0.41 0.09 16 34 H 0.06 0.47 8.03 -51.92 -0.42 0.05 16 35 H 0.06 0.46 7.78 -51.92 -0.40 0.06 16 36 H 0.06 0.84 6.04 -51.93 -0.31 0.53 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.69 7.92 -51.93 -0.41 0.28 16 LS Contribution 307.21 15.07 4.63 4.63 Total: -1.00 -31.31 307.21 -6.37 -37.67 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -6.29 Total: -2.40 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.22 Total: -12.39 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.77 Total: -26.65 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.59 Total: -17.59 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.31 -6.37 -37.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173578669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.083 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds