Wall clock time and date at job start Sun Mar 29 2020 22:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 115.54973 * 2 1 4 4 C 1.53003 * 117.49718 * 145.66420 * 2 1 3 5 5 C 1.50707 * 117.49839 * 359.97438 * 4 2 1 6 6 O 1.20830 * 119.99843 * 149.47735 * 5 4 2 7 7 O 1.34228 * 119.99926 * 329.47496 * 5 4 2 8 8 C 1.45198 * 116.99775 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47225 * 180.02562 * 8 7 5 10 10 C 1.50691 * 109.47389 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99895 * 359.97438 * 10 9 8 12 12 C 1.37885 * 120.00147 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99687 * 179.97438 * 12 10 9 14 14 Si 1.86791 * 119.99869 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.47025 * 90.00492 * 14 12 10 16 16 H 1.48496 * 109.47342 * 210.00171 * 14 12 10 17 17 H 1.48494 * 109.47425 * 330.00590 * 14 12 10 18 18 C 1.52991 * 60.03170 * 107.48132 * 4 2 1 19 19 C 1.52999 * 117.50121 * 107.50297 * 18 4 2 20 20 C 1.53007 * 117.50057 * 252.52300 * 18 4 2 21 21 H 1.08994 * 109.46833 * 320.84452 * 1 2 3 22 22 H 1.08999 * 109.46742 * 80.84528 * 1 2 3 23 23 H 1.08997 * 109.47158 * 200.84105 * 1 2 3 24 24 H 1.09008 * 109.47662 * 154.27680 * 3 2 1 25 25 H 1.09002 * 109.47494 * 274.27485 * 3 2 1 26 26 H 1.09003 * 109.47342 * 34.27366 * 3 2 1 27 27 H 1.08996 * 117.50075 * 214.98537 * 4 2 1 28 28 H 1.09000 * 109.47657 * 300.00158 * 8 7 5 29 29 H 1.08997 * 109.46861 * 60.00286 * 8 7 5 30 30 H 1.09005 * 109.47223 * 300.00718 * 9 8 7 31 31 H 1.09002 * 109.46798 * 59.99923 * 9 8 7 32 32 H 0.97001 * 119.99401 * 179.97438 * 13 12 10 33 33 H 1.08994 * 109.47587 * 111.39465 * 19 18 4 34 34 H 1.09008 * 109.46912 * 231.39258 * 19 18 4 35 35 H 1.09007 * 109.46949 * 351.38905 * 19 18 4 36 36 H 1.08992 * 109.46869 * 8.60567 * 20 18 4 37 37 H 1.08999 * 109.46989 * 128.60658 * 20 18 4 38 38 H 1.09000 * 109.46861 * 248.60731 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2365 -1.1207 0.7655 5 6 1.3720 -2.1397 1.4623 6 8 1.7636 -3.2751 1.5943 7 8 0.1670 -1.7859 1.9362 8 6 -0.6114 -2.8193 2.5954 9 6 -1.9444 -2.2327 3.0644 10 6 -2.7520 -3.3050 3.7490 11 1 -2.3545 -4.3050 3.8402 12 6 -3.9989 -3.0097 4.2582 13 7 -4.7038 -3.9457 4.8553 14 14 -4.6867 -1.2802 4.0998 15 1 -5.4512 -1.1657 2.8318 16 1 -5.5862 -0.9983 5.2472 17 1 -3.5697 -0.3018 4.0945 18 6 2.2368 -1.1222 -0.7644 19 6 3.5495 -0.7782 -1.4710 20 6 1.3589 -2.1578 -1.4701 21 1 -0.3633 0.7969 0.6489 22 1 -0.3633 0.1635 -1.0146 23 1 -0.3633 -0.9604 0.3656 24 1 3.1820 1.3089 0.4460 25 1 2.2775 1.7412 -1.0248 26 1 1.5804 2.0744 0.5787 27 1 3.1715 -0.8747 1.2688 28 1 -0.7994 -3.6342 1.8964 29 1 -0.0583 -3.1981 3.4548 30 1 -1.7568 -1.4175 3.7633 31 1 -2.4972 -1.8541 2.2046 32 1 -5.5809 -3.7378 5.2137 33 1 3.9370 -1.6662 -1.9703 34 1 3.3710 0.0045 -2.2084 35 1 4.2759 -0.4277 -0.7376 36 1 0.7296 -2.6611 -0.7362 37 1 0.7298 -1.6589 -2.2072 38 1 1.9922 -2.8910 -1.9695 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173578669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:23 Heat of formation + Delta-G solvation = -99.240951 kcal Electronic energy + Delta-G solvation = -17763.135455 eV Core-core repulsion = 14991.318036 eV Total energy + Delta-G solvation = -2771.817420 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.03711 -39.72836 -37.74152 -35.41094 -32.84376 -32.08752 -29.71825 -29.33936 -27.25586 -27.08815 -24.14558 -22.58306 -21.09350 -19.19172 -18.82723 -18.05491 -17.84774 -17.23727 -16.31184 -15.80684 -15.58326 -15.12751 -14.69392 -14.54047 -14.29470 -13.74584 -13.48219 -13.39512 -13.34931 -13.17645 -13.15902 -12.86009 -12.66937 -12.57527 -12.50458 -12.40652 -11.86672 -11.75821 -11.56090 -11.51150 -11.32508 -10.83241 -10.71151 -10.34707 -8.36243 -6.44702 1.06990 1.36535 1.38542 1.51286 1.66212 2.32933 2.52408 2.98625 3.40559 3.51186 3.63554 3.99070 4.08301 4.12152 4.16586 4.22579 4.53373 4.58814 4.67137 4.71824 4.86091 4.88800 4.96546 4.98682 5.02212 5.08514 5.10861 5.16017 5.20977 5.25908 5.29767 5.44615 5.48681 5.52652 5.61366 6.13708 6.61115 6.69963 7.20458 8.80087 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.035054 B = 0.005650 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.573021 B = 4954.985966 C = 5381.271562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.111 4.111 4 C -0.174 4.174 5 C 0.487 3.513 6 O -0.547 6.547 7 O -0.343 6.343 8 C 0.087 3.913 9 C 0.001 3.999 10 C -0.545 4.545 11 H 0.033 0.967 12 C 0.013 3.987 13 N -0.944 5.944 14 Si 0.954 3.046 15 H -0.262 1.262 16 H -0.280 1.280 17 H -0.244 1.244 18 C -0.083 4.083 19 C -0.110 4.110 20 C -0.124 4.124 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.158 0.842 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.271 0.729 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.023 0.977 37 H 0.082 0.918 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.085 13.924 -14.354 25.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 C -0.168 4.168 4 C -0.192 4.192 5 C 0.333 3.667 6 O -0.437 6.437 7 O -0.260 6.260 8 C 0.014 3.986 9 C -0.036 4.036 10 C -0.582 4.582 11 H 0.051 0.949 12 C -0.185 4.185 13 N -0.584 5.584 14 Si 0.776 3.224 15 H -0.186 1.186 16 H -0.205 1.205 17 H -0.167 1.167 18 C -0.083 4.083 19 C -0.167 4.167 20 C -0.181 4.181 21 H 0.084 0.916 22 H 0.091 0.909 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.176 0.824 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.101 0.899 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.002 13.533 -14.204 24.697 hybrid contribution -0.721 -0.566 0.734 1.175 sum 14.281 12.967 -13.469 23.527 Atomic orbital electron populations 1.21733 0.91979 1.03333 1.02208 1.21942 0.95066 0.91920 0.99839 1.21388 1.00261 0.91728 1.03377 1.22744 1.00568 0.99910 0.95997 1.23421 0.80223 0.88168 0.74912 1.90622 1.73568 1.23351 1.56205 1.86658 1.29065 1.43283 1.66975 1.22946 0.91654 0.88849 0.95154 1.19420 0.90792 0.96585 0.96797 1.21122 1.02342 0.96623 1.38146 0.94911 1.25953 0.96650 1.02354 0.93547 1.70045 1.13103 1.35945 1.39294 0.85605 0.79079 0.79169 0.78549 1.18624 1.20518 1.16719 1.21997 0.99714 0.98660 0.87953 1.21401 0.92204 1.02601 1.00454 1.21461 0.99027 0.97633 0.99997 0.91628 0.90945 0.92372 0.91094 0.89991 0.91652 0.82429 0.92883 0.92920 0.94707 0.94685 0.92010 0.91531 0.89622 0.90968 0.95746 0.89887 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.16 71.98 0.59 -2.66 16 2 C -0.09 -1.76 2.70 -52.16 -0.14 -1.90 16 3 C -0.11 -1.50 8.88 71.98 0.64 -0.86 16 4 C -0.17 -4.29 5.55 -11.54 -0.06 -4.36 16 5 C 0.49 17.20 5.27 71.24 0.38 17.57 16 6 O -0.55 -22.91 16.84 21.95 0.37 -22.54 16 7 O -0.34 -13.11 6.91 -51.40 -0.36 -13.46 16 8 C 0.09 3.89 5.40 71.98 0.39 4.28 16 9 C 0.00 0.07 4.42 29.84 0.13 0.20 16 10 C -0.54 -32.02 9.66 25.60 0.25 -31.77 16 11 H 0.03 2.13 7.99 -2.91 -0.02 2.10 16 12 C 0.01 0.76 5.47 84.66 0.46 1.22 16 13 N -0.94 -59.17 13.96 21.45 0.30 -58.87 16 14 Si 0.95 43.57 27.47 68.60 1.88 45.45 16 15 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 18 C -0.08 -1.64 2.70 -52.16 -0.14 -1.78 16 19 C -0.11 -1.41 8.88 71.98 0.64 -0.77 16 20 C -0.12 -2.79 8.70 71.98 0.63 -2.16 16 21 H 0.06 1.53 8.00 -2.39 -0.02 1.51 16 22 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.06 1.77 4.41 -2.39 -0.01 1.76 16 24 H 0.07 0.80 7.78 -2.38 -0.02 0.78 16 25 H 0.08 0.84 8.03 -2.39 -0.02 0.82 16 26 H 0.06 0.91 7.98 -2.39 -0.02 0.89 16 27 H 0.16 3.21 7.96 -2.39 -0.02 3.19 16 28 H 0.05 2.43 8.13 -2.39 -0.02 2.41 16 29 H 0.05 2.43 8.13 -2.39 -0.02 2.41 16 30 H 0.03 1.64 7.20 -2.38 -0.02 1.62 16 31 H 0.03 1.61 7.57 -2.39 -0.02 1.59 16 32 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 33 H 0.07 0.84 7.92 -2.39 -0.02 0.82 16 34 H 0.09 0.81 8.03 -2.38 -0.02 0.79 16 35 H 0.07 0.79 7.78 -2.38 -0.02 0.77 16 36 H 0.02 0.70 6.04 -2.39 -0.01 0.69 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.07 1.47 7.92 -2.39 -0.02 1.46 16 Total: -1.00 -69.88 307.21 6.91 -62.97 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.96 Total: 9.44 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 3.75 Total: -22.99 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.30 Total: -58.87 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: 0.01 Total: -36.00 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.88 Total: 45.45 kcal Total: -69.88 6.91 -62.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173578669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.271 kcal (2) G-P(sol) polarization free energy of solvation -69.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds