Wall clock time and date at job start Sun Mar 29 2020 22:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.54221 * 2 1 4 4 C 1.54890 * 110.48702 * 122.61804 * 2 1 3 5 5 C 1.54896 * 102.74750 * 156.61899 * 4 2 1 6 6 C 1.54266 * 104.19491 * 322.05865 * 5 4 2 7 7 C 1.53869 * 106.60157 * 23.60694 * 6 5 4 8 8 H 1.08998 * 110.03530 * 240.66731 * 7 6 5 9 9 C 1.53005 * 110.03044 * 119.28491 * 7 6 5 10 10 C 1.50700 * 109.46802 * 66.45624 * 9 7 6 11 11 O 1.20822 * 119.99967 * 0.02562 * 10 9 7 12 12 O 1.34226 * 119.99604 * 180.02562 * 10 9 7 13 13 C 1.45200 * 116.99915 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47288 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47525 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99441 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00075 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00481 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99886 * 179.73007 * 17 15 14 20 20 H 1.48494 * 109.47225 * 180.27306 * 19 17 15 21 21 H 1.48506 * 109.46866 * 300.27330 * 19 17 15 22 22 H 1.48498 * 109.47306 * 60.26614 * 19 17 15 23 23 H 1.09003 * 109.46776 * 182.61311 * 1 2 3 24 24 H 1.09002 * 109.46864 * 302.60733 * 1 2 3 25 25 H 1.08991 * 109.47192 * 62.60947 * 1 2 3 26 26 H 1.08995 * 110.75996 * 38.30734 * 4 2 1 27 27 H 1.08997 * 110.75834 * 274.93023 * 4 2 1 28 28 H 1.09002 * 110.48559 * 203.37831 * 5 4 2 29 29 H 1.09004 * 110.48337 * 80.73265 * 5 4 2 30 30 H 1.09002 * 110.02898 * 264.32030 * 6 5 4 31 31 H 1.09000 * 110.07294 * 142.92079 * 6 5 4 32 32 H 1.08996 * 109.46992 * 306.45152 * 9 7 6 33 33 H 1.09005 * 109.46980 * 186.45554 * 9 7 6 34 34 H 1.08995 * 109.47559 * 59.99827 * 13 12 10 35 35 H 1.09001 * 109.46716 * 299.99618 * 13 12 10 36 36 H 1.09009 * 109.47378 * 59.99750 * 14 13 12 37 37 H 1.08998 * 109.47458 * 300.00211 * 14 13 12 38 38 H 0.97005 * 119.99656 * 359.72741 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0206 0.0000 4 6 2.0721 -0.7821 1.2221 5 6 3.4907 -1.1981 0.7598 6 6 3.3165 -1.5405 -0.7343 7 6 2.0699 -0.7788 -1.2174 8 1 1.3179 -1.4821 -1.5750 9 6 2.4506 0.1942 -2.3351 10 6 2.8920 -0.5828 -3.5486 11 8 2.9007 -1.7907 -3.5223 12 8 3.2755 0.0672 -4.6586 13 6 3.6875 -0.7454 -5.7892 14 6 4.0856 0.1643 -6.9531 15 6 4.5137 -0.6790 -8.1264 16 1 4.5026 -1.7562 -8.0497 17 6 4.9197 -0.0754 -9.2976 18 7 4.9328 1.2363 -9.3912 19 14 5.4576 -1.1207 -10.7493 20 1 5.8497 -0.2376 -11.8769 21 1 6.6162 -1.9605 -10.3522 22 1 4.3346 -1.9952 -11.1727 23 1 -0.3633 -1.0266 0.0469 24 1 -0.3633 0.5538 0.8657 25 1 -0.3633 0.4727 -0.9124 26 1 1.4581 -1.6602 1.4221 27 1 2.1253 -0.1384 2.1001 28 1 3.8316 -2.0724 1.3143 29 1 4.1898 -0.3708 0.8825 30 1 3.1693 -2.6135 -0.8566 31 1 4.1926 -1.2176 -1.2967 32 1 3.2654 0.8345 -1.9974 33 1 1.5877 0.8089 -2.5913 34 1 2.8612 -1.3867 -6.0961 35 1 4.5390 -1.3623 -5.5021 36 1 4.9118 0.8060 -6.6466 37 1 3.2339 0.7810 -7.2401 38 1 4.6531 1.7792 -8.6375 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184961776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:10 Heat of formation + Delta-G solvation = -150.846806 kcal Electronic energy + Delta-G solvation = -17057.194140 eV Core-core repulsion = 14283.138922 eV Total energy + Delta-G solvation = -2774.055218 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.66740 -39.58252 -37.68708 -35.84174 -32.93919 -32.15157 -31.91736 -27.75547 -26.52839 -25.42186 -23.49595 -22.20709 -21.29775 -20.40491 -19.13343 -18.39806 -17.78996 -17.26877 -16.46940 -15.88946 -15.65975 -15.32705 -15.18614 -14.63719 -14.14729 -14.02371 -13.82213 -13.59551 -13.40593 -13.06742 -12.79073 -12.50521 -12.17711 -11.94328 -11.91525 -11.90518 -11.70119 -11.57946 -11.57534 -11.45400 -11.38344 -11.30226 -10.87699 -10.62178 -8.79644 -6.52166 1.15921 1.52104 1.60939 1.72186 1.81480 2.53950 3.07390 3.48037 3.63647 3.68719 3.85898 4.03624 4.09115 4.25011 4.29176 4.38018 4.48393 4.50922 4.59894 4.68487 4.71037 4.79190 4.86337 4.98684 5.03157 5.09209 5.15683 5.16635 5.26536 5.31483 5.37127 5.45565 5.52709 5.60237 5.79864 6.04382 6.42850 6.70367 7.30279 8.62382 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.057218 B = 0.003763 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.240098 B = 7438.293685 C = 7616.905875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.091 0.909 4 C -0.115 4.115 5 C -0.123 4.123 6 C -0.118 4.118 7 C -0.076 4.076 8 H 0.066 0.934 9 C -0.101 4.101 10 C 0.448 3.552 11 O -0.540 6.540 12 O -0.371 6.371 13 C 0.097 3.903 14 C 0.014 3.986 15 C -0.628 4.628 16 H 0.055 0.945 17 C -0.031 4.031 18 N -0.929 5.929 19 Si 1.123 2.877 20 H -0.279 1.279 21 H -0.268 1.268 22 H -0.267 1.267 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.862 -1.712 21.510 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.109 0.891 4 C -0.152 4.152 5 C -0.161 4.161 6 C -0.155 4.155 7 C -0.094 4.094 8 H 0.084 0.916 9 C -0.138 4.138 10 C 0.294 3.706 11 O -0.430 6.430 12 O -0.288 6.288 13 C 0.024 3.976 14 C -0.023 4.023 15 C -0.666 4.666 16 H 0.074 0.926 17 C -0.229 4.229 18 N -0.565 5.565 19 Si 0.943 3.057 20 H -0.204 1.204 21 H -0.193 1.193 22 H -0.192 1.192 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.298 -1.993 19.943 21.009 hybrid contribution -0.439 -0.225 1.192 1.291 sum -6.737 -2.218 21.136 22.294 Atomic orbital electron populations 1.21827 0.94214 1.01907 1.02337 1.22030 0.96049 0.99604 0.92828 0.89066 1.22557 0.95284 0.99962 0.97443 1.22388 0.98032 1.01495 0.94177 1.22152 0.96849 0.99710 0.96835 1.21728 0.97697 0.96070 0.93947 0.91565 1.21752 1.04986 0.98805 0.88254 1.24762 0.73150 0.87754 0.84979 1.90612 1.51452 1.17108 1.83807 1.86516 1.75899 1.43032 1.23324 1.22915 0.98445 0.93204 0.83059 1.19153 0.95528 0.95558 0.92029 1.22236 1.49803 0.94666 0.99866 0.92637 1.27547 0.93669 0.97853 1.03875 1.70908 1.45672 1.05594 1.34343 0.82873 0.77354 0.73541 0.71977 1.20437 1.19267 1.19237 0.93037 0.91201 0.92630 0.91471 0.89861 0.91385 0.90910 0.93198 0.93761 0.85847 0.85724 0.92474 0.92512 0.97785 0.97752 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.12 71.98 0.66 -1.25 16 2 C -0.09 -1.26 2.99 -9.72 -0.03 -1.28 16 3 H 0.09 1.12 7.85 -2.39 -0.02 1.10 16 4 C -0.12 -1.54 6.33 31.89 0.20 -1.34 16 5 C -0.12 -2.00 6.83 31.67 0.22 -1.79 16 6 C -0.12 -2.65 5.34 31.32 0.17 -2.49 16 7 C -0.08 -1.58 2.13 -10.07 -0.02 -1.60 16 8 H 0.07 1.59 7.67 -2.39 -0.02 1.58 16 9 C -0.10 -2.27 4.97 29.85 0.15 -2.12 16 10 C 0.45 15.46 7.48 71.24 0.53 15.99 16 11 O -0.54 -21.39 14.82 21.97 0.33 -21.06 16 12 O -0.37 -15.12 10.22 -51.38 -0.53 -15.64 16 13 C 0.10 4.54 5.40 71.98 0.39 4.93 16 14 C 0.01 0.79 4.66 29.85 0.14 0.93 16 15 C -0.63 -36.68 9.11 25.60 0.23 -36.44 16 16 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 17 C -0.03 -1.81 5.46 84.65 0.46 -1.35 16 18 N -0.93 -57.67 13.65 21.45 0.29 -57.38 16 19 Si 1.12 50.05 29.90 68.60 2.05 52.10 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 H 0.05 0.72 8.12 -2.39 -0.02 0.70 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.91 8.04 -2.39 -0.02 0.90 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.04 1.13 7.32 -2.39 -0.02 1.11 16 32 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.06 2.66 8.13 -2.39 -0.02 2.64 16 35 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 36 H 0.00 0.22 8.01 -2.38 -0.02 0.20 16 37 H 0.00 0.24 8.00 -2.39 -0.02 0.22 16 38 H 0.26 16.20 7.22 -92.70 -0.67 15.53 16 Total: -1.00 -68.55 311.12 6.34 -62.21 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 1.10 Total: 7.60 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 3.10 Total: -27.82 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.29 Total: -57.38 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.20 Total: -36.70 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.10 kcal Total: -68.55 6.34 -62.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184961776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.641 kcal (2) G-P(sol) polarization free energy of solvation -68.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds