Wall clock time and date at job start Sun Mar 29 2020 22:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99983 * 2 1 4 4 H 1.48503 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47460 * 299.99940 * 3 2 1 6 6 H 1.48506 * 109.47130 * 60.00091 * 3 2 1 7 7 C 1.37872 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00501 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47201 * 180.02562 * 9 7 2 11 11 O 1.45204 * 109.46851 * 180.02562 * 10 9 7 12 12 C 1.34229 * 116.99739 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00098 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99898 * 179.97438 * 12 11 10 15 15 C 1.53002 * 109.47344 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.46817 * 64.99877 * 15 14 12 17 17 C 1.52999 * 109.47317 * 179.97438 * 16 15 14 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 20 20 C 1.53000 * 109.47233 * 184.99683 * 15 14 12 21 21 H 0.97001 * 119.99759 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.46744 * 60.00327 * 9 7 2 23 23 H 1.09003 * 109.46863 * 300.00485 * 9 7 2 24 24 H 1.08994 * 109.47521 * 59.99824 * 10 9 7 25 25 H 1.09003 * 109.47315 * 299.99849 * 10 9 7 26 26 H 1.09008 * 109.47224 * 59.99630 * 14 12 11 27 27 H 1.08997 * 109.47214 * 299.99624 * 14 12 11 28 28 H 1.09002 * 109.47070 * 305.00057 * 15 14 12 29 29 H 1.08996 * 109.47853 * 300.00202 * 16 15 14 30 30 H 1.09002 * 109.47153 * 60.00231 * 16 15 14 31 31 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 33 33 H 1.09002 * 109.46935 * 299.99411 * 18 17 16 34 34 H 1.09001 * 109.46812 * 179.97438 * 18 17 16 35 35 H 1.08993 * 109.47194 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.46695 * 59.99734 * 19 18 17 37 37 H 1.08992 * 109.47399 * 300.00166 * 20 15 14 38 38 H 1.09004 * 109.46724 * 60.00652 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5191 -4.9196 -0.0011 12 6 2.2502 -6.0453 -0.0007 13 8 3.4568 -5.9821 -0.0003 14 6 1.5660 -7.3880 -0.0007 15 6 2.6197 -8.4973 -0.0008 16 6 3.4130 -8.4472 1.3065 17 6 4.4663 -9.5569 1.3068 18 6 3.7752 -10.9162 1.1814 19 6 2.9819 -10.9663 -0.1259 20 6 1.9291 -9.8568 -0.1264 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8718 -3.6044 0.8894 25 1 2.8718 -3.6044 -0.8905 26 1 0.9435 -7.4786 -0.8909 27 1 0.9430 -7.4783 0.8891 28 1 3.2973 -8.3548 -0.8426 29 1 3.9051 -7.4788 1.3962 30 1 2.7354 -8.5898 2.1484 31 1 5.0312 -9.5215 2.2384 32 1 5.1440 -9.4148 0.4650 33 1 3.0975 -11.0583 2.0232 34 1 4.5256 -11.7067 1.1811 35 1 2.4899 -11.9348 -0.2155 36 1 3.6596 -10.8241 -0.9678 37 1 1.2516 -9.9993 0.7154 38 1 1.3640 -9.8925 -1.0578 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194208200.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:31 Heat of formation + Delta-G solvation = -135.031298 kcal Electronic energy + Delta-G solvation = -17026.955057 eV Core-core repulsion = 14253.585651 eV Total energy + Delta-G solvation = -2773.369406 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.18594 -38.47549 -36.03346 -33.34900 -32.82346 -30.82201 -30.29973 -27.59025 -24.90169 -22.75325 -22.20953 -20.91476 -20.15635 -19.77562 -17.26380 -16.17051 -16.09856 -15.72136 -15.45274 -14.53636 -14.47553 -14.28143 -13.94279 -13.41219 -12.78769 -12.46496 -12.36393 -12.24869 -12.05254 -11.75561 -11.24184 -11.18252 -11.07442 -10.99112 -10.76080 -10.67415 -10.55336 -10.42825 -10.17908 -9.91508 -9.61389 -9.52148 -9.26386 -8.44499 -6.10286 -4.14507 2.64310 3.24697 3.27565 3.35394 3.41138 4.39274 4.51210 4.59675 4.65463 4.99726 5.04814 5.12255 5.26345 5.30465 5.37811 5.40547 5.48760 5.52980 5.58357 5.66650 5.78690 5.90733 6.00942 6.05289 6.07678 6.11489 6.14067 6.17246 6.39203 6.41100 6.65889 7.08246 7.57582 7.63297 7.87766 8.21658 8.31769 8.91398 9.49956 11.01315 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.065192 B = 0.003678 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.395390 B = 7610.403102 C = 7881.706365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.360 6.360 12 C 0.453 3.547 13 O -0.517 6.517 14 C -0.113 4.113 15 C -0.075 4.075 16 C -0.124 4.124 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.114 4.114 21 H 0.263 0.737 22 H 0.028 0.972 23 H 0.028 0.972 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.712 -20.680 0.978 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.276 6.276 12 C 0.297 3.703 13 O -0.406 6.406 14 C -0.151 4.151 15 C -0.093 4.093 16 C -0.161 4.161 17 C -0.154 4.154 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.152 4.152 21 H 0.072 0.928 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.912 -20.487 0.979 20.880 hybrid contribution 0.492 1.051 -0.005 1.161 sum 4.403 -19.436 0.974 19.952 Atomic orbital electron populations 1.69986 1.06094 1.26859 1.49932 1.24988 0.94922 0.99406 0.94892 0.86418 0.80063 0.83152 0.77698 1.19586 1.20825 1.20828 1.21030 0.93214 0.90156 1.51982 0.92225 1.19172 0.94213 0.89131 0.98828 1.23600 0.96308 0.78996 1.00822 1.86531 1.42559 1.15939 1.82590 1.23611 0.86674 0.87399 0.72628 1.90586 1.15872 1.88267 1.45917 1.21473 0.99362 0.88714 1.05539 1.20992 0.96032 0.92572 0.99739 1.21746 0.97793 1.00184 0.96374 1.21497 0.97932 0.94347 1.01672 1.21561 0.99118 0.97341 0.97759 1.21501 0.97867 0.98193 0.98007 1.21577 0.97781 0.93837 1.01980 0.92774 0.95386 0.95394 0.92419 0.92429 0.87982 0.88029 0.90266 0.89974 0.92468 0.92248 0.92005 0.92134 0.92396 0.92146 0.92001 0.91754 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -14.95 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 10 C 0.08 1.71 5.40 37.16 0.20 1.91 16 11 O -0.36 -7.29 10.22 -39.26 -0.40 -7.69 16 12 C 0.45 7.82 7.68 36.00 0.28 8.09 16 13 O -0.52 -9.99 13.72 -18.75 -0.26 -10.24 16 14 C -0.11 -1.36 5.29 -27.88 -0.15 -1.51 16 15 C -0.07 -0.82 1.84 -90.62 -0.17 -0.99 16 16 C -0.12 -1.43 4.94 -26.73 -0.13 -1.57 16 17 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 18 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 19 C -0.12 -0.95 5.92 -26.76 -0.16 -1.11 16 20 C -0.11 -0.98 5.20 -26.76 -0.14 -1.12 16 21 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 25 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 26 H 0.10 1.06 8.14 -51.92 -0.42 0.63 16 27 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 0.97 7.96 -51.93 -0.41 0.56 16 29 H 0.08 1.18 5.96 -51.93 -0.31 0.87 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -30.70 308.20 -8.05 -38.75 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -6.60 Total: -4.21 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -1.14 Total: -11.94 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.74 Total: -25.81 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.66 Total: -17.94 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.70 -8.05 -38.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194208200.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.285 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds