Wall clock time and date at job start Sun Mar 29 2020 22:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99983 * 2 1 4 4 H 1.48503 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47460 * 299.99940 * 3 2 1 6 6 H 1.48506 * 109.47130 * 60.00091 * 3 2 1 7 7 C 1.37872 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00501 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47201 * 180.02562 * 9 7 2 11 11 O 1.45204 * 109.46851 * 180.02562 * 10 9 7 12 12 C 1.34229 * 116.99739 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00098 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99898 * 179.97438 * 12 11 10 15 15 C 1.53002 * 109.47344 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.46817 * 64.99877 * 15 14 12 17 17 C 1.52999 * 109.47317 * 179.97438 * 16 15 14 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 20 20 C 1.53000 * 109.47233 * 184.99683 * 15 14 12 21 21 H 0.97001 * 119.99759 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.46744 * 60.00327 * 9 7 2 23 23 H 1.09003 * 109.46863 * 300.00485 * 9 7 2 24 24 H 1.08994 * 109.47521 * 59.99824 * 10 9 7 25 25 H 1.09003 * 109.47315 * 299.99849 * 10 9 7 26 26 H 1.09008 * 109.47224 * 59.99630 * 14 12 11 27 27 H 1.08997 * 109.47214 * 299.99624 * 14 12 11 28 28 H 1.09002 * 109.47070 * 305.00057 * 15 14 12 29 29 H 1.08996 * 109.47853 * 300.00202 * 16 15 14 30 30 H 1.09002 * 109.47153 * 60.00231 * 16 15 14 31 31 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 33 33 H 1.09002 * 109.46935 * 299.99411 * 18 17 16 34 34 H 1.09001 * 109.46812 * 179.97438 * 18 17 16 35 35 H 1.08993 * 109.47194 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.46695 * 59.99734 * 19 18 17 37 37 H 1.08992 * 109.47399 * 300.00166 * 20 15 14 38 38 H 1.09004 * 109.46724 * 60.00652 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5191 -4.9196 -0.0011 12 6 2.2502 -6.0453 -0.0007 13 8 3.4568 -5.9821 -0.0003 14 6 1.5660 -7.3880 -0.0007 15 6 2.6197 -8.4973 -0.0008 16 6 3.4130 -8.4472 1.3065 17 6 4.4663 -9.5569 1.3068 18 6 3.7752 -10.9162 1.1814 19 6 2.9819 -10.9663 -0.1259 20 6 1.9291 -9.8568 -0.1264 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8718 -3.6044 0.8894 25 1 2.8718 -3.6044 -0.8905 26 1 0.9435 -7.4786 -0.8909 27 1 0.9430 -7.4783 0.8891 28 1 3.2973 -8.3548 -0.8426 29 1 3.9051 -7.4788 1.3962 30 1 2.7354 -8.5898 2.1484 31 1 5.0312 -9.5215 2.2384 32 1 5.1440 -9.4148 0.4650 33 1 3.0975 -11.0583 2.0232 34 1 4.5256 -11.7067 1.1811 35 1 2.4899 -11.9348 -0.2155 36 1 3.6596 -10.8241 -0.9678 37 1 1.2516 -9.9993 0.7154 38 1 1.3640 -9.8925 -1.0578 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194208200.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:30 Heat of formation + Delta-G solvation = -150.955138 kcal Electronic energy + Delta-G solvation = -17027.645566 eV Core-core repulsion = 14253.585651 eV Total energy + Delta-G solvation = -2774.059915 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.58122 -39.43510 -37.57527 -35.46060 -33.77642 -32.31017 -31.56977 -28.69175 -26.84722 -23.66685 -23.37013 -22.64699 -21.36775 -20.60693 -18.93646 -18.08895 -17.62287 -17.21299 -16.48944 -16.23978 -15.62852 -14.96057 -14.92502 -14.83618 -14.40370 -14.22668 -13.47936 -13.19580 -13.09260 -13.00889 -12.86417 -12.64966 -12.57888 -12.47054 -11.98366 -11.86942 -11.81427 -11.56127 -11.47717 -11.38970 -11.30654 -10.93747 -10.74946 -10.63400 -8.28766 -6.42174 1.24697 1.40013 1.40671 1.54276 1.83667 2.39465 3.05507 3.63484 3.74918 3.81685 4.02296 4.19553 4.24191 4.25604 4.32665 4.48051 4.53855 4.58126 4.68050 4.68780 4.73253 4.80233 4.87636 5.04737 5.19880 5.27111 5.28170 5.31189 5.34311 5.42871 5.44717 5.49689 5.61910 5.63884 5.76904 6.05052 6.70815 6.81457 7.27809 8.84129 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.065192 B = 0.003678 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.395390 B = 7610.403102 C = 7881.706365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.551 4.551 8 H 0.063 0.937 9 C 0.030 3.970 10 C 0.091 3.909 11 O -0.370 6.370 12 C 0.448 3.552 13 O -0.540 6.540 14 C -0.105 4.105 15 C -0.072 4.072 16 C -0.125 4.125 17 C -0.117 4.117 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.109 4.109 21 H 0.268 0.732 22 H 0.006 0.994 23 H 0.006 0.994 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.789 -21.798 1.013 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.589 4.589 8 H 0.082 0.918 9 C -0.007 4.007 10 C 0.018 3.982 11 O -0.287 6.287 12 C 0.294 3.706 13 O -0.430 6.430 14 C -0.142 4.142 15 C -0.090 4.090 16 C -0.162 4.162 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.146 4.146 21 H 0.077 0.923 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.144 0.856 27 H 0.141 0.859 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.995 -21.633 1.013 22.022 hybrid contribution 0.467 1.331 -0.006 1.410 sum 4.461 -20.303 1.007 20.811 Atomic orbital electron populations 1.70100 1.07805 1.28256 1.50395 1.25973 0.95870 1.03441 0.94028 0.85259 0.78839 0.78001 0.78094 1.18707 1.19946 1.19958 1.21409 0.93656 0.91328 1.52502 0.91839 1.18983 0.94346 0.90706 0.96653 1.23091 0.94988 0.79493 1.00670 1.86529 1.42876 1.15986 1.83280 1.24734 0.86675 0.87917 0.71321 1.90584 1.17124 1.88451 1.46870 1.21686 0.99699 0.85210 1.07631 1.20993 0.95610 0.93798 0.98630 1.21720 0.98318 0.98971 0.97224 1.21490 0.97526 0.95056 1.01360 1.21548 0.99430 0.96190 0.98284 1.21522 0.97705 0.98831 0.97544 1.21558 0.97918 0.91966 1.03181 0.92283 0.97519 0.97540 0.92520 0.92508 0.85583 0.85870 0.91984 0.93443 0.91493 0.92093 0.93039 0.91431 0.91396 0.90383 0.92533 0.90568 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 2 C 0.01 0.34 5.46 84.65 0.46 0.80 16 3 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.55 -31.80 9.11 25.60 0.23 -31.57 16 8 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.66 5.35 29.85 0.16 1.82 16 10 C 0.09 4.21 5.40 71.98 0.39 4.60 16 11 O -0.37 -15.11 10.22 -51.41 -0.53 -15.63 16 12 C 0.45 15.37 7.68 71.23 0.55 15.92 16 13 O -0.54 -21.20 13.72 21.97 0.30 -20.89 16 14 C -0.11 -2.34 5.29 29.85 0.16 -2.18 16 15 C -0.07 -1.47 1.84 -10.79 -0.02 -1.49 16 16 C -0.12 -2.81 4.94 30.59 0.15 -2.66 16 17 C -0.12 -2.23 5.92 30.60 0.18 -2.05 16 18 C -0.12 -1.68 5.92 30.60 0.18 -1.50 16 19 C -0.12 -1.59 5.92 30.58 0.18 -1.41 16 20 C -0.11 -1.54 5.20 30.58 0.16 -1.39 16 21 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 22 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 24 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 25 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 26 H 0.13 2.26 8.14 -2.38 -0.02 2.24 16 27 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.06 1.49 7.96 -2.39 -0.02 1.47 16 29 H 0.05 1.40 5.96 -2.39 -0.01 1.38 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -66.71 308.20 5.87 -60.84 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 1.00 Total: 6.34 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 2.78 Total: -21.10 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.28 Total: -55.58 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.22 Total: -36.53 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -66.71 5.87 -60.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194208200.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.120 kcal (2) G-P(sol) polarization free energy of solvation -66.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds