Wall clock time and date at job start Sun Mar 29 2020 22:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 120.00339 * 2 1 4 4 H 1.48496 * 109.46858 * 274.98625 * 3 2 1 5 5 H 1.48502 * 109.46990 * 34.98415 * 3 2 1 6 6 H 1.48497 * 109.47341 * 154.98893 * 3 2 1 7 7 C 1.40048 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99950 * 186.14519 * 7 2 1 9 9 C 1.46372 * 120.00322 * 6.14824 * 7 2 1 10 10 O 1.21694 * 120.00070 * 353.93737 * 9 7 2 11 11 N 1.34774 * 120.00202 * 173.94019 * 9 7 2 12 12 C 1.46499 * 119.99982 * 179.97438 * 11 9 7 13 13 C 1.53007 * 109.47274 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47261 * 180.02562 * 13 12 11 15 15 N 1.46902 * 109.46998 * 180.02562 * 14 13 12 16 16 C 1.46849 * 110.99818 * 169.99951 * 15 14 13 17 17 C 1.53034 * 109.52267 * 185.83950 * 16 15 14 18 18 C 1.53118 * 109.28051 * 300.82239 * 17 16 15 19 19 C 1.53125 * 109.16143 * 57.65013 * 18 17 16 20 20 C 1.46840 * 110.99980 * 294.21065 * 15 14 13 21 21 H 0.96999 * 119.99305 * 359.97438 * 1 2 3 22 22 H 0.97001 * 120.00332 * 359.97438 * 11 9 7 23 23 H 1.08998 * 109.47392 * 60.00344 * 12 11 9 24 24 H 1.08993 * 109.47815 * 300.00118 * 12 11 9 25 25 H 1.09004 * 109.47037 * 60.00310 * 13 12 11 26 26 H 1.09003 * 109.47033 * 300.00816 * 13 12 11 27 27 H 1.08996 * 109.47160 * 60.00287 * 14 13 12 28 28 H 1.09002 * 109.47005 * 300.00315 * 14 13 12 29 29 H 1.08997 * 109.46023 * 65.82410 * 16 15 14 30 30 H 1.09006 * 109.46046 * 305.85616 * 16 15 14 31 31 H 1.09001 * 109.50507 * 180.88207 * 17 16 15 32 32 H 1.08998 * 109.50557 * 60.76052 * 17 16 15 33 33 H 1.09001 * 109.52714 * 177.55859 * 18 17 16 34 34 H 1.08998 * 109.52201 * 297.75157 * 18 17 16 35 35 H 1.09004 * 109.49610 * 62.29450 * 19 18 17 36 36 H 1.08996 * 109.50075 * 182.40311 * 19 18 17 37 37 H 1.09008 * 109.46313 * 294.17564 * 20 15 14 38 38 H 1.08999 * 109.46637 * 54.14671 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3829 2.1071 -1.3948 5 1 1.4949 2.6200 0.8027 6 1 3.5871 1.4120 0.5919 7 6 2.0069 -1.2129 -0.0005 8 1 3.0823 -1.2157 0.0996 9 6 1.2813 -2.4768 -0.1369 10 8 0.0644 -2.4827 -0.1388 11 7 1.9609 -3.6341 -0.2602 12 6 1.2347 -4.8991 -0.3961 13 6 2.2346 -6.0507 -0.5193 14 6 1.4762 -7.3717 -0.6618 15 7 2.4363 -8.4773 -0.7795 16 6 1.7581 -9.7760 -0.6801 17 6 2.7999 -10.8968 -0.6603 18 6 3.6355 -10.8331 -1.9419 19 6 4.2921 -9.4536 -2.0456 20 6 3.2070 -8.3747 -2.0251 21 1 -0.4849 0.8401 0.0004 22 1 2.9309 -3.6295 -0.2591 23 1 0.6090 -4.8649 -1.2880 24 1 0.6077 -5.0543 0.4818 25 1 2.8607 -6.0851 0.3724 26 1 2.8614 -5.8952 -1.3975 27 1 0.8504 -7.3370 -1.5536 28 1 0.8492 -7.5273 0.2161 29 1 1.0989 -9.9080 -1.5380 30 1 1.1708 -9.8098 0.2376 31 1 2.2956 -11.8615 -0.6024 32 1 3.4510 -10.7733 0.2050 33 1 4.4070 -11.6025 -1.9124 34 1 2.9907 -10.9953 -2.8055 35 1 4.9667 -9.3075 -1.2020 36 1 4.8539 -9.3873 -2.9772 37 1 2.5409 -8.5133 -2.8768 38 1 3.6722 -7.3907 -2.0844 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229010487.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:02 Heat of formation + Delta-G solvation = -58.748508 kcal Electronic energy + Delta-G solvation = -16918.680430 eV Core-core repulsion = 14180.911646 eV Total energy + Delta-G solvation = -2737.768785 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.16799 -37.29284 -34.97484 -33.12086 -32.26757 -31.03287 -30.00321 -26.60911 -25.05947 -23.33902 -22.74144 -20.76497 -19.86509 -19.56874 -17.07595 -16.21290 -15.47290 -15.28305 -14.80859 -14.59391 -14.25086 -14.10999 -13.86009 -13.55586 -13.15512 -12.74548 -12.29133 -12.24884 -11.70568 -11.47943 -11.35078 -11.07538 -11.02675 -10.95780 -10.88313 -10.61036 -10.50386 -10.36795 -10.20348 -10.16323 -8.81561 -8.37543 -7.57069 -7.44119 -6.15939 -4.59793 3.16213 3.23124 3.26982 3.77666 4.14380 4.61777 4.62889 4.66055 4.73718 4.89071 5.07323 5.18405 5.25493 5.33694 5.43900 5.47298 5.53984 5.61108 5.67801 5.74071 5.79479 5.81803 5.88470 5.93415 6.00569 6.04296 6.16053 6.22413 6.65660 6.67037 7.04616 7.05667 7.47202 7.98585 8.16046 8.37988 9.06162 9.59348 10.63957 10.82883 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.059827 B = 0.003619 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.902995 B = 7735.712392 C = 8061.606601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.583 6.583 11 N -0.768 5.768 12 C 0.134 3.866 13 C -0.124 4.124 14 C 0.059 3.941 15 N -0.538 5.538 16 C 0.055 3.945 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.117 4.117 20 C 0.050 3.950 21 H 0.268 0.732 22 H 0.380 0.620 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.030 0.970 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.525 -18.470 -3.247 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.466 6.466 11 N -0.423 5.423 12 C 0.008 3.992 13 C -0.162 4.162 14 C -0.069 4.069 15 N -0.263 5.263 16 C -0.073 4.073 17 C -0.154 4.154 18 C -0.159 4.159 19 C -0.155 4.155 20 C -0.077 4.077 21 H 0.078 0.922 22 H 0.211 0.789 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.748 -18.343 -2.853 19.752 hybrid contribution 0.303 0.715 -0.725 1.062 sum 7.052 -17.628 -3.578 19.320 Atomic orbital electron populations 1.70037 1.07093 1.27178 1.35467 1.25715 0.94595 1.00304 0.92628 0.86360 0.80239 0.81511 0.78630 1.19842 1.20481 1.18884 1.20901 0.94102 0.89657 1.53745 0.91400 1.18228 0.87145 0.82473 0.76381 1.90592 1.14148 1.86536 1.55328 1.46110 1.08566 1.05830 1.81834 1.20789 0.94038 0.84057 1.00267 1.21783 0.98761 0.93032 1.02600 1.22032 0.93568 0.90314 1.00964 1.61917 1.26293 1.02072 1.36035 1.22077 0.95431 0.89091 1.00745 1.21582 0.97913 0.97402 0.98539 1.21585 0.99188 0.97327 0.97836 1.21590 0.97750 0.94129 1.02017 1.22160 0.95625 0.99907 0.90052 0.92173 0.78882 0.93734 0.93482 0.90925 0.91860 0.94715 0.90524 0.95145 0.90764 0.91788 0.91078 0.91998 0.92460 0.91069 0.91722 0.95131 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.51 11.85 55.55 0.66 -22.85 16 2 C 0.09 2.48 5.49 -17.37 -0.10 2.38 16 3 Si 0.91 20.42 29.56 -169.99 -5.03 15.40 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.55 -15.80 9.53 -35.63 -0.34 -16.14 16 8 H 0.07 1.79 7.86 -52.48 -0.41 1.38 16 9 C 0.55 16.24 7.74 -12.99 -0.10 16.14 16 10 O -0.58 -19.44 15.05 5.19 0.08 -19.36 16 11 N -0.77 -17.71 5.55 -61.72 -0.34 -18.06 16 12 C 0.13 2.64 5.67 -4.04 -0.02 2.61 16 13 C -0.12 -1.81 5.26 -26.73 -0.14 -1.95 16 14 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 15 N -0.54 -6.31 4.66 -234.67 -1.09 -7.40 16 16 C 0.05 0.55 5.46 -3.83 -0.02 0.53 16 17 C -0.12 -0.99 6.09 -26.65 -0.16 -1.16 16 18 C -0.12 -1.00 6.00 -26.61 -0.16 -1.16 16 19 C -0.12 -1.06 6.09 -26.65 -0.16 -1.22 16 20 C 0.05 0.54 5.29 -3.84 -0.02 0.52 16 21 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 22 H 0.38 7.68 8.45 -40.82 -0.35 7.33 16 23 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.89 6.43 -51.93 -0.33 0.56 16 27 H 0.03 0.46 8.12 -51.93 -0.42 0.03 16 28 H 0.08 0.98 7.99 -51.93 -0.41 0.56 16 29 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.72 8.02 -51.93 -0.42 0.30 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.03 0.34 8.14 -51.92 -0.42 -0.09 16 38 H 0.08 0.90 6.21 -51.93 -0.32 0.58 16 LS Contribution 306.52 15.07 4.62 4.62 Total: -1.00 -34.26 306.52 -8.80 -43.06 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.45 Total: 3.28 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.24 Total: 1.31 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.78 Total: -48.31 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.08 Total: -19.36 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.26 -8.80 -43.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229010487.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.685 kcal (2) G-P(sol) polarization free energy of solvation -34.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds