Wall clock time and date at job start Sun Mar 29 2020 22:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99615 * 2 1 4 4 H 1.48508 * 109.47334 * 239.72380 * 3 2 1 5 5 H 1.48498 * 109.47629 * 359.72852 * 3 2 1 6 6 H 1.48503 * 109.46985 * 119.72780 * 3 2 1 7 7 C 1.38810 * 120.00182 * 179.72923 * 2 1 3 8 8 H 1.07997 * 119.99802 * 162.64690 * 7 2 1 9 9 N 1.36931 * 119.99773 * 342.64001 * 7 2 1 10 10 C 1.46928 * 120.63565 * 332.32908 * 9 7 2 11 11 C 1.53192 * 108.77639 * 233.58613 * 10 9 7 12 12 C 1.53040 * 109.31031 * 305.36311 * 11 10 9 13 13 C 1.53042 * 109.54030 * 61.36512 * 12 11 10 14 14 H 1.09004 * 109.49679 * 58.58716 * 13 12 11 15 15 N 1.46898 * 109.49640 * 178.68382 * 13 12 11 16 16 C 1.47020 * 110.99851 * 303.63340 * 15 13 12 17 17 C 1.53101 * 109.25413 * 177.61083 * 16 15 13 18 18 O 1.43014 * 109.26293 * 56.84889 * 17 16 15 19 19 C 1.43013 * 113.73870 * 301.33264 * 18 17 16 20 20 C 1.47012 * 111.00072 * 180.02562 * 15 13 12 21 21 C 1.46926 * 120.62874 * 152.04832 * 9 7 2 22 22 H 0.97000 * 120.00243 * 0.27683 * 1 2 3 23 23 H 1.09005 * 109.58259 * 353.37161 * 10 9 7 24 24 H 1.09000 * 109.58362 * 113.79487 * 10 9 7 25 25 H 1.08999 * 109.49830 * 65.31262 * 11 10 9 26 26 H 1.08996 * 109.49395 * 185.41355 * 11 10 9 27 27 H 1.09000 * 109.45711 * 181.39026 * 12 11 10 28 28 H 1.09002 * 109.45890 * 301.35946 * 12 11 10 29 29 H 1.08995 * 109.50607 * 297.54278 * 16 15 13 30 30 H 1.08995 * 109.50595 * 57.67455 * 16 15 13 31 31 H 1.08998 * 109.50823 * 296.90913 * 17 16 15 32 32 H 1.09002 * 109.50135 * 176.78346 * 17 16 15 33 33 H 1.09004 * 109.50555 * 298.73067 * 19 18 17 34 34 H 1.08994 * 109.54205 * 178.62452 * 19 18 17 35 35 H 1.09003 * 109.50517 * 302.33057 * 20 15 13 36 36 H 1.09003 * 109.50696 * 62.41279 * 20 15 13 37 37 H 1.09004 * 109.58783 * 246.20626 * 21 9 7 38 38 H 1.09001 * 109.58775 * 6.62172 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1089 1.6937 -1.2092 5 1 1.2851 2.7465 -0.0066 6 1 3.0988 1.6994 1.2158 7 6 2.0103 -1.2021 0.0057 8 1 3.0534 -1.2246 -0.2732 9 7 1.3724 -2.3593 0.3650 10 6 0.2278 -2.3284 1.2857 11 6 0.5006 -3.2930 2.4441 12 6 0.8184 -4.6808 1.8828 13 6 2.0742 -4.6052 1.0112 14 1 2.9080 -4.2325 1.6062 15 7 2.3965 -5.9435 0.4985 16 6 2.5592 -6.9043 1.5994 17 6 2.8344 -8.2944 1.0197 18 8 3.9891 -8.2346 0.1782 19 6 3.8648 -7.3089 -0.9049 20 6 3.6004 -5.9090 -0.3444 21 6 1.8157 -3.6548 -0.1677 22 1 -0.4850 0.8400 -0.0041 23 1 0.0985 -1.3181 1.6742 24 1 -0.6743 -2.6372 0.7576 25 1 1.3492 -2.9326 3.0255 26 1 -0.3803 -3.3521 3.0833 27 1 0.9887 -5.3750 2.7057 28 1 -0.0206 -5.0300 1.2809 29 1 3.3963 -6.5997 2.2275 30 1 1.6473 -6.9326 2.1957 31 1 1.9746 -8.6218 0.4352 32 1 3.0123 -8.9988 1.8323 33 1 3.0350 -7.6076 -1.5455 34 1 4.7876 -7.3004 -1.4850 35 1 3.4487 -5.2104 -1.1672 36 1 4.4538 -5.5879 0.2529 37 1 1.0404 -4.0697 -0.8119 38 1 2.7344 -3.5201 -0.7386 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260089078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:35 Heat of formation + Delta-G solvation = -17.356541 kcal Electronic energy + Delta-G solvation = -18293.258917 eV Core-core repulsion = 15557.285023 eV Total energy + Delta-G solvation = -2735.973894 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.63862 -37.51930 -34.99441 -32.60149 -31.32573 -30.30136 -29.25723 -25.93047 -25.45532 -23.89134 -21.61788 -21.60361 -20.16942 -19.04545 -17.02281 -16.15039 -16.01202 -15.09877 -14.88746 -14.66777 -14.49918 -14.01871 -13.74347 -13.27265 -13.00974 -12.52636 -12.41262 -12.10245 -11.72682 -11.42619 -11.30497 -10.98636 -10.85573 -10.68762 -10.38365 -10.26822 -10.15197 -9.89483 -9.70950 -9.50807 -9.34909 -8.46365 -8.10489 -6.67854 -5.79241 -3.21598 3.37827 3.43649 3.44870 3.82963 4.02540 4.51030 4.96014 5.11012 5.12388 5.21715 5.31869 5.36903 5.52346 5.54694 5.62510 5.63831 5.71788 5.81703 5.90144 5.97515 6.01024 6.10641 6.25407 6.39110 6.58736 6.67774 6.76402 6.82000 6.89993 7.11838 7.28061 7.35282 7.42773 7.67159 7.78771 8.44925 9.20996 9.84375 10.41216 11.29288 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038536 B = 0.006195 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.420417 B = 4518.893994 C = 4997.336726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.101 4.101 13 C 0.069 3.931 14 H 0.038 0.962 15 N -0.531 5.531 16 C 0.014 3.986 17 C 0.065 3.935 18 O -0.391 6.391 19 C 0.065 3.935 20 C 0.016 3.984 21 C 0.158 3.842 22 H 0.254 0.746 23 H 0.087 0.913 24 H 0.019 0.981 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.039 0.961 37 H 0.027 0.973 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.937 -13.129 2.448 13.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.044 3.956 11 C -0.182 4.182 12 C -0.139 4.139 13 C -0.040 4.040 14 H 0.056 0.944 15 N -0.257 5.257 16 C -0.114 4.114 17 C -0.012 4.012 18 O -0.310 6.310 19 C -0.012 4.012 20 C -0.113 4.113 21 C 0.031 3.969 22 H 0.064 0.936 23 H 0.105 0.895 24 H 0.037 0.963 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.594 -13.225 2.166 13.875 hybrid contribution 0.846 1.357 0.523 1.682 sum 4.440 -11.868 2.689 12.953 Atomic orbital electron populations 1.70030 1.05262 1.25630 1.53660 1.25023 0.95269 0.98383 1.00828 0.86372 0.78937 0.83349 0.78130 1.20859 1.21570 1.21067 1.19119 0.92629 0.84976 1.41690 0.91839 1.44031 1.35862 1.01068 1.50410 1.20807 0.88581 0.98397 0.87842 1.22202 1.00038 0.95912 1.00013 1.21503 0.97356 0.97377 0.97691 1.22378 0.96757 0.86989 0.97907 0.94434 1.62265 1.34501 1.08678 1.20268 1.22806 1.01373 0.93289 0.93938 1.22651 0.88609 0.95991 0.93932 1.87934 1.39331 1.62121 1.41575 1.22675 1.01876 0.87842 0.88801 1.22794 0.91746 0.98117 0.98607 1.20947 0.97749 0.86178 0.92011 0.93551 0.89507 0.96308 0.92943 0.93020 0.93713 0.91901 0.94483 0.89389 0.92425 0.88958 0.92341 0.88769 0.88994 0.94301 0.95491 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 11.19 55.49 0.62 -25.64 16 2 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 3 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -7.04 9.58 -15.06 -0.14 -7.19 16 8 H 0.06 1.73 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -15.01 2.99 -172.05 -0.51 -15.53 16 10 C 0.17 4.09 5.31 -3.71 -0.02 4.07 16 11 C -0.14 -2.76 6.08 -26.61 -0.16 -2.92 16 12 C -0.10 -1.77 4.86 -26.69 -0.13 -1.90 16 13 C 0.07 1.26 2.10 -67.37 -0.14 1.12 16 14 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 15 N -0.53 -8.29 4.60 -225.92 -1.04 -9.33 16 16 C 0.01 0.19 5.25 -3.71 -0.02 0.17 16 17 C 0.07 0.77 7.01 37.21 0.26 1.03 16 18 O -0.39 -5.30 10.83 -35.23 -0.38 -5.68 16 19 C 0.07 0.80 7.01 37.21 0.26 1.06 16 20 C 0.02 0.23 5.35 -3.71 -0.02 0.21 16 21 C 0.16 3.40 5.42 -3.49 -0.02 3.38 16 22 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 23 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.04 0.68 6.22 -51.93 -0.32 0.36 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 1.11 6.08 -51.93 -0.32 0.79 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.34 6.32 -51.93 -0.33 1.02 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.05 1.07 6.48 -51.93 -0.34 0.73 16 LS Contribution 288.43 15.07 4.35 4.35 Total: -1.00 -29.72 288.43 -8.45 -38.18 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.24 Total: -2.10 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -0.22 Total: -0.95 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.93 Total: -50.50 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.38 Total: -5.68 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.72 -8.45 -38.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260089078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.822 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds