Wall clock time and date at job start Sun Mar 29 2020 22:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46942 * 2 1 4 4 C 1.37085 * 119.99972 * 92.19927 * 3 2 1 5 5 H 1.08004 * 120.00406 * 316.32068 * 4 3 2 6 6 C 1.38959 * 120.00098 * 136.32679 * 4 3 2 7 7 N 1.31403 * 120.00032 * 160.72176 * 6 4 3 8 8 Si 1.86797 * 119.99641 * 340.71785 * 6 4 3 9 9 H 1.48499 * 109.47221 * 94.99098 * 8 6 4 10 10 H 1.48504 * 109.46804 * 214.99056 * 8 6 4 11 11 H 1.48501 * 109.47092 * 334.98828 * 8 6 4 12 12 C 1.34779 * 119.99581 * 272.19868 * 3 2 1 13 13 O 1.21293 * 119.99624 * 184.51900 * 12 3 2 14 14 C 1.50696 * 120.00505 * 4.51733 * 12 3 2 15 15 H 1.09007 * 109.29744 * 35.98720 * 14 12 3 16 16 C 1.52919 * 109.30213 * 276.40535 * 14 12 3 17 17 C 1.53267 * 108.71583 * 188.73236 * 16 14 12 18 18 C 1.53079 * 108.24219 * 67.81785 * 17 16 14 19 19 C 1.50173 * 109.88786 * 311.03277 * 18 17 16 20 20 O 1.21285 * 118.24273 * 197.55575 * 19 18 17 21 21 N 1.33354 * 123.51251 * 17.58234 * 19 18 17 22 22 H 1.08997 * 109.47560 * 64.69579 * 1 2 3 23 23 H 1.09005 * 109.46995 * 184.69259 * 1 2 3 24 24 H 1.09003 * 109.47037 * 304.69108 * 1 2 3 25 25 H 1.09001 * 109.46886 * 240.00054 * 2 1 3 26 26 H 1.09002 * 109.46864 * 120.00034 * 2 1 3 27 27 H 0.97008 * 119.99835 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.60376 * 308.69201 * 16 14 12 29 29 H 1.09006 * 109.60274 * 69.17603 * 16 14 12 30 30 H 1.09001 * 109.82127 * 308.11030 * 17 16 14 31 31 H 1.08996 * 109.74179 * 187.47826 * 17 16 14 32 32 H 1.08997 * 109.39668 * 190.90461 * 18 17 16 33 33 H 1.08998 * 109.39628 * 71.16215 * 18 17 16 34 34 H 0.97003 * 117.94572 * 177.79548 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2897 2.0123 1.1863 5 1 1.6051 1.9194 2.0165 6 6 3.4457 2.7716 1.3208 7 7 3.5360 3.6667 2.2786 8 14 4.8711 2.5198 0.1402 9 1 4.7770 3.5051 -0.9668 10 1 6.1534 2.7102 0.8646 11 1 4.8162 1.1439 -0.4158 12 6 2.2007 2.0315 -1.1664 13 8 2.6819 3.1448 -1.1712 14 6 1.8067 1.3753 -2.4646 15 1 0.9036 0.7847 -2.3101 16 6 2.9375 0.4573 -2.9305 17 6 2.6219 -0.0309 -4.3486 18 6 2.7080 1.1669 -5.2980 19 6 1.9213 2.3182 -4.7405 20 8 1.6122 3.2191 -5.4913 21 7 1.5449 2.4033 -3.4640 22 1 -0.3634 0.4392 -0.9290 23 1 -0.3633 -1.0243 0.0841 24 1 -0.3633 0.5849 0.8450 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 4.3432 4.1966 2.3727 28 1 3.8784 1.0075 -2.9312 29 1 3.0126 -0.3994 -2.2606 30 1 1.6171 -0.4521 -4.3795 31 1 3.3466 -0.7884 -4.6470 32 1 2.3021 0.8880 -6.2703 33 1 3.7507 1.4629 -5.4136 34 1 1.0667 3.1991 -3.1832 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270245304.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:42 Heat of formation + Delta-G solvation = -64.173656 kcal Electronic energy + Delta-G solvation = -18372.712481 eV Core-core repulsion = 15498.875350 eV Total energy + Delta-G solvation = -2873.837131 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.45096 -38.78949 -36.02599 -35.13708 -32.89124 -32.34163 -29.80383 -29.74498 -25.82117 -24.04315 -22.91869 -22.25145 -19.74762 -19.01448 -17.52657 -17.02073 -16.10719 -15.88409 -15.34324 -14.92729 -14.14146 -13.88493 -13.83051 -13.67012 -13.34078 -13.12580 -12.88712 -12.42040 -12.16329 -11.94461 -11.41024 -11.30946 -11.17714 -11.08804 -10.86130 -10.46577 -10.23364 -10.00538 -9.68493 -9.07329 -8.61228 -8.40325 -7.70933 -6.26109 -4.06295 2.82803 3.11617 3.36824 3.45623 3.61156 3.76492 4.24379 4.49496 4.64311 4.74664 4.80955 4.85857 5.10867 5.26710 5.34367 5.39759 5.47518 5.67015 5.72648 5.75046 5.79725 5.82070 5.93992 6.14168 6.17225 6.33891 6.61141 6.99462 7.57307 7.76513 7.88603 8.41752 8.67143 8.78216 9.33627 9.66730 10.78544 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.025361 B = 0.010125 C = 0.008798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.779075 B = 2764.728568 C = 3181.679932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.092 3.908 3 N -0.455 5.455 4 C -0.355 4.355 5 H 0.096 0.904 6 C 0.092 3.908 7 N -0.863 5.863 8 Si 0.915 3.085 9 H -0.256 1.256 10 H -0.309 1.309 11 H -0.281 1.281 12 C 0.433 3.567 13 O -0.533 6.533 14 C 0.124 3.876 15 H 0.092 0.908 16 C -0.135 4.135 17 C -0.120 4.120 18 C -0.136 4.136 19 C 0.521 3.479 20 O -0.568 6.568 21 N -0.691 5.691 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.273 0.727 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 -11.949 -9.546 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.032 4.032 3 N -0.177 5.177 4 C -0.480 4.480 5 H 0.113 0.887 6 C -0.118 4.118 7 N -0.497 5.497 8 Si 0.746 3.254 9 H -0.181 1.181 10 H -0.239 1.239 11 H -0.207 1.207 12 C 0.221 3.779 13 O -0.415 6.415 14 C 0.014 3.986 15 H 0.110 0.890 16 C -0.173 4.173 17 C -0.157 4.157 18 C -0.176 4.176 19 C 0.308 3.692 20 O -0.447 6.447 21 N -0.343 5.343 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -2.227 -10.991 -9.863 14.934 hybrid contribution 0.564 0.136 -0.114 0.591 sum -1.663 -10.855 -9.977 14.837 Atomic orbital electron populations 1.22203 0.96844 1.01178 1.02327 1.21734 0.94054 0.85384 1.01998 1.43623 1.58776 1.10034 1.05227 1.18803 1.07506 1.31330 0.90385 0.88688 1.25353 0.98136 0.93081 0.95207 1.69748 1.28228 1.18699 1.33067 0.86302 0.78750 0.78836 0.81486 1.18143 1.23889 1.20673 1.20463 0.85022 0.87188 0.85231 1.90568 1.45101 1.20118 1.85688 1.21039 0.99494 0.89571 0.88469 0.88995 1.21950 0.98495 0.99580 0.97243 1.21660 1.02946 0.97210 0.93930 1.21662 1.01814 0.93775 1.00348 1.20080 0.79323 0.88071 0.81705 1.90731 1.56767 1.40606 1.56639 1.45232 1.57788 1.22997 1.08262 0.93177 0.92493 0.91756 0.92271 0.90127 0.91728 0.90450 0.89106 0.90807 0.90225 0.88250 0.88307 0.75847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.08 37.16 0.37 -1.94 16 2 C 0.09 1.50 5.71 -4.04 -0.02 1.47 16 3 N -0.45 -10.09 2.14 -114.81 -0.25 -10.34 16 4 C -0.35 -9.59 9.69 -14.94 -0.14 -9.74 16 5 H 0.10 2.69 8.06 -52.48 -0.42 2.27 16 6 C 0.09 2.65 4.86 -17.47 -0.08 2.56 16 7 N -0.86 -26.06 13.96 55.50 0.77 -25.29 16 8 Si 0.92 23.86 24.80 -169.99 -4.22 19.65 16 9 H -0.26 -7.13 6.27 56.52 0.35 -6.77 16 10 H -0.31 -7.98 7.11 56.52 0.40 -7.58 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.43 9.61 5.18 -10.99 -0.06 9.55 16 13 O -0.53 -14.33 11.72 5.55 0.07 -14.27 16 14 C 0.12 2.04 2.66 -69.53 -0.18 1.85 16 15 H 0.09 1.28 5.56 -51.92 -0.29 0.99 16 16 C -0.13 -1.86 5.08 -26.63 -0.14 -2.00 16 17 C -0.12 -1.22 6.04 -26.55 -0.16 -1.38 16 18 C -0.14 -1.65 6.02 -28.10 -0.17 -1.82 16 19 C 0.52 8.78 7.71 -11.87 -0.09 8.69 16 20 O -0.57 -11.57 17.78 5.55 0.10 -11.47 16 21 N -0.69 -12.01 4.79 -55.99 -0.27 -12.28 16 22 H 0.05 0.66 6.57 -51.93 -0.34 0.32 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.79 4.97 -51.93 -0.26 0.53 16 26 H 0.08 1.30 8.02 -51.93 -0.42 0.88 16 27 H 0.27 7.79 8.31 -40.82 -0.34 7.45 16 28 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 29 H 0.09 1.11 6.22 -51.93 -0.32 0.79 16 30 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.40 7.50 8.52 -40.82 -0.35 7.15 16 LS Contribution 271.85 15.07 4.10 4.10 Total: -1.00 -34.72 271.85 -4.91 -39.62 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -4.54 Total: 3.02 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -0.68 Total: 7.25 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.26 Total: -47.91 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: 0.16 Total: -25.74 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -4.22 Total: 19.65 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -34.72 -4.91 -39.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270245304.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.549 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds