Wall clock time and date at job start Sun Mar 29 2020 22:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46942 * 2 1 4 4 C 1.37085 * 119.99972 * 92.19927 * 3 2 1 5 5 H 1.08004 * 120.00406 * 316.32068 * 4 3 2 6 6 C 1.38959 * 120.00098 * 136.32679 * 4 3 2 7 7 N 1.31403 * 120.00032 * 160.72176 * 6 4 3 8 8 Si 1.86797 * 119.99641 * 340.71785 * 6 4 3 9 9 H 1.48499 * 109.47221 * 94.99098 * 8 6 4 10 10 H 1.48504 * 109.46804 * 214.99056 * 8 6 4 11 11 H 1.48501 * 109.47092 * 334.98828 * 8 6 4 12 12 C 1.34779 * 119.99581 * 272.19868 * 3 2 1 13 13 O 1.21293 * 119.99624 * 184.51900 * 12 3 2 14 14 C 1.50696 * 120.00505 * 4.51733 * 12 3 2 15 15 H 1.09007 * 109.29744 * 35.98720 * 14 12 3 16 16 C 1.52919 * 109.30213 * 276.40535 * 14 12 3 17 17 C 1.53267 * 108.71583 * 188.73236 * 16 14 12 18 18 C 1.53079 * 108.24219 * 67.81785 * 17 16 14 19 19 C 1.50173 * 109.88786 * 311.03277 * 18 17 16 20 20 O 1.21285 * 118.24273 * 197.55575 * 19 18 17 21 21 N 1.33354 * 123.51251 * 17.58234 * 19 18 17 22 22 H 1.08997 * 109.47560 * 64.69579 * 1 2 3 23 23 H 1.09005 * 109.46995 * 184.69259 * 1 2 3 24 24 H 1.09003 * 109.47037 * 304.69108 * 1 2 3 25 25 H 1.09001 * 109.46886 * 240.00054 * 2 1 3 26 26 H 1.09002 * 109.46864 * 120.00034 * 2 1 3 27 27 H 0.97008 * 119.99835 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.60376 * 308.69201 * 16 14 12 29 29 H 1.09006 * 109.60274 * 69.17603 * 16 14 12 30 30 H 1.09001 * 109.82127 * 308.11030 * 17 16 14 31 31 H 1.08996 * 109.74179 * 187.47826 * 17 16 14 32 32 H 1.08997 * 109.39668 * 190.90461 * 18 17 16 33 33 H 1.08998 * 109.39628 * 71.16215 * 18 17 16 34 34 H 0.97003 * 117.94572 * 177.79548 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2897 2.0123 1.1863 5 1 1.6051 1.9194 2.0165 6 6 3.4457 2.7716 1.3208 7 7 3.5360 3.6667 2.2786 8 14 4.8711 2.5198 0.1402 9 1 4.7770 3.5051 -0.9668 10 1 6.1534 2.7102 0.8646 11 1 4.8162 1.1439 -0.4158 12 6 2.2007 2.0315 -1.1664 13 8 2.6819 3.1448 -1.1712 14 6 1.8067 1.3753 -2.4646 15 1 0.9036 0.7847 -2.3101 16 6 2.9375 0.4573 -2.9305 17 6 2.6219 -0.0309 -4.3486 18 6 2.7080 1.1669 -5.2980 19 6 1.9213 2.3182 -4.7405 20 8 1.6122 3.2191 -5.4913 21 7 1.5449 2.4033 -3.4640 22 1 -0.3634 0.4392 -0.9290 23 1 -0.3633 -1.0243 0.0841 24 1 -0.3633 0.5849 0.8450 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 4.3432 4.1966 2.3727 28 1 3.8784 1.0075 -2.9312 29 1 3.0126 -0.3994 -2.2606 30 1 1.6171 -0.4521 -4.3795 31 1 3.3466 -0.7884 -4.6470 32 1 2.3021 0.8880 -6.2703 33 1 3.7507 1.4629 -5.4136 34 1 1.0667 3.1991 -3.1832 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270245304.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:42 Heat of formation + Delta-G solvation = -91.478708 kcal Electronic energy + Delta-G solvation = -18373.896517 eV Core-core repulsion = 15498.875350 eV Total energy + Delta-G solvation = -2875.021167 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.85692 -40.37743 -37.37562 -36.85689 -34.44978 -33.93468 -31.32608 -31.01367 -27.37492 -25.60366 -24.07323 -23.54644 -21.51130 -20.13245 -19.32025 -18.39945 -17.64773 -17.32548 -17.12237 -16.19290 -15.78269 -15.48008 -15.17679 -14.91299 -14.72136 -14.56997 -14.30403 -14.11726 -13.80764 -13.14757 -12.84188 -12.69707 -12.57224 -12.22525 -12.16120 -12.05794 -11.83496 -11.61465 -11.07417 -10.80123 -10.54924 -10.03685 -9.59487 -8.44406 -6.22318 1.17212 1.29061 1.48908 1.53870 1.80025 2.22899 2.42891 2.66582 3.06606 3.56824 3.63101 3.71185 3.81430 4.05848 4.20261 4.26780 4.51106 4.57921 4.65078 4.75672 4.84394 4.92435 5.05568 5.08322 5.12497 5.27301 5.47541 5.59475 5.68865 5.84956 6.30156 6.72381 6.85338 7.10136 7.30224 7.80307 8.63461 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.025361 B = 0.010125 C = 0.008798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.779075 B = 2764.728568 C = 3181.679932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.083 3.917 3 N -0.467 5.467 4 C -0.346 4.346 5 H 0.070 0.930 6 C 0.040 3.960 7 N -0.912 5.912 8 Si 0.966 3.034 9 H -0.290 1.290 10 H -0.311 1.311 11 H -0.246 1.246 12 C 0.429 3.571 13 O -0.588 6.588 14 C 0.133 3.867 15 H 0.129 0.871 16 C -0.139 4.139 17 C -0.105 4.105 18 C -0.132 4.132 19 C 0.514 3.486 20 O -0.612 6.612 21 N -0.700 5.700 22 H 0.058 0.942 23 H 0.098 0.902 24 H 0.034 0.966 25 H 0.102 0.898 26 H 0.081 0.919 27 H 0.271 0.729 28 H 0.052 0.948 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 -15.887 -11.847 20.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.038 4.038 3 N -0.189 5.189 4 C -0.473 4.473 5 H 0.087 0.913 6 C -0.164 4.164 7 N -0.550 5.550 8 Si 0.796 3.204 9 H -0.218 1.218 10 H -0.241 1.241 11 H -0.169 1.169 12 C 0.218 3.782 13 O -0.473 6.473 14 C 0.025 3.975 15 H 0.146 0.854 16 C -0.177 4.177 17 C -0.143 4.143 18 C -0.172 4.172 19 C 0.303 3.697 20 O -0.495 6.495 21 N -0.348 5.348 22 H 0.077 0.923 23 H 0.116 0.884 24 H 0.053 0.947 25 H 0.120 0.880 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.134 0.866 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.122 0.878 34 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -2.538 -15.025 -12.156 19.492 hybrid contribution 0.516 1.390 0.596 1.598 sum -2.022 -13.635 -11.561 17.990 Atomic orbital electron populations 1.22154 0.94879 1.03362 1.01530 1.22089 0.95621 0.81935 1.04183 1.43856 1.58842 1.12465 1.03706 1.18733 1.06159 1.30917 0.91479 0.91274 1.26050 1.00581 0.93346 0.96430 1.69850 1.28929 1.20738 1.35487 0.85462 0.76539 0.79587 0.78794 1.21770 1.24053 1.16914 1.21554 0.82870 0.86624 0.87108 1.90540 1.47174 1.22772 1.86803 1.21160 1.02183 0.89268 0.84880 0.85380 1.22094 0.95858 0.99262 1.00477 1.21685 1.05553 0.96693 0.90331 1.21773 1.01111 0.92539 1.01757 1.21078 0.78680 0.88955 0.80974 1.90707 1.58475 1.42728 1.57610 1.45452 1.57557 1.22920 1.08917 0.92288 0.88377 0.94698 0.88012 0.90070 0.91995 0.92939 0.86563 0.88373 0.86543 0.85806 0.87754 0.77367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.87 10.08 71.98 0.73 -3.14 16 2 C 0.08 2.40 5.71 86.38 0.49 2.89 16 3 N -0.47 -20.08 2.14 -635.53 -1.36 -21.44 16 4 C -0.35 -19.02 9.69 84.04 0.81 -18.20 16 5 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 6 C 0.04 2.37 4.86 84.93 0.41 2.78 16 7 N -0.91 -57.56 13.96 21.66 0.30 -57.25 16 8 Si 0.97 50.15 24.80 68.60 1.70 51.85 16 9 H -0.29 -16.57 6.27 99.48 0.62 -15.95 16 10 H -0.31 -15.89 7.11 99.48 0.71 -15.18 16 11 H -0.25 -11.05 7.11 99.48 0.71 -10.34 16 12 C 0.43 18.50 5.18 87.66 0.45 18.96 16 13 O -0.59 -32.13 11.72 -3.07 -0.04 -32.17 16 14 C 0.13 3.96 2.66 44.36 0.12 4.08 16 15 H 0.13 2.90 5.56 -2.38 -0.01 2.89 16 16 C -0.14 -3.14 5.08 30.66 0.16 -2.99 16 17 C -0.11 -1.48 6.04 30.71 0.19 -1.29 16 18 C -0.13 -2.64 6.02 29.71 0.18 -2.46 16 19 C 0.51 16.33 7.71 87.71 0.68 17.01 16 20 O -0.61 -24.69 17.78 -3.05 -0.05 -24.75 16 21 N -0.70 -23.24 4.79 -450.24 -2.16 -25.40 16 22 H 0.06 1.30 6.57 -2.39 -0.02 1.29 16 23 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.10 2.08 4.97 -2.39 -0.01 2.07 16 26 H 0.08 2.35 8.02 -2.39 -0.02 2.33 16 27 H 0.27 16.26 8.31 -92.70 -0.77 15.49 16 28 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 29 H 0.12 2.05 6.22 -2.38 -0.01 2.03 16 30 H 0.10 1.00 8.13 -2.39 -0.02 0.98 16 31 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.39 14.62 8.52 -92.71 -0.79 13.83 16 Total: -1.00 -82.01 271.85 2.85 -79.16 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.24 Total: 12.37 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 4.21 Total: 17.64 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -3.21 Total: -104.09 kcal Atomic # 8 Polarization: -56.83 SS G_CDS: -0.09 Total: -56.92 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 1.70 Total: 51.85 kcal Total: -82.01 2.85 -79.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270245304.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.321 kcal (2) G-P(sol) polarization free energy of solvation -82.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds