Wall clock time and date at job start Sun Mar 29 2020 22:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.46856 * 2 1 4 4 C 1.37098 * 120.00200 * 265.75964 * 3 2 1 5 5 H 1.08001 * 120.00173 * 188.33771 * 4 3 2 6 6 C 1.38954 * 119.99834 * 8.34112 * 4 3 2 7 7 N 1.31408 * 120.00180 * 22.56729 * 6 4 3 8 8 Si 1.86801 * 119.99889 * 202.57035 * 6 4 3 9 9 H 1.48504 * 109.47008 * 84.98268 * 8 6 4 10 10 H 1.48500 * 109.46875 * 204.97778 * 8 6 4 11 11 H 1.48492 * 109.47276 * 324.98004 * 8 6 4 12 12 C 1.34781 * 120.00149 * 85.76677 * 3 2 1 13 13 O 1.21288 * 120.00084 * 179.97438 * 12 3 2 14 14 C 1.50695 * 119.99698 * 359.97438 * 12 3 2 15 15 C 1.53496 * 114.20448 * 179.97438 * 14 12 3 16 16 N 1.47076 * 87.98650 * 139.65062 * 15 14 12 17 17 C 1.34770 * 136.05325 * 152.84104 * 16 15 14 18 18 C 1.50711 * 119.99312 * 180.02562 * 17 16 15 19 19 O 1.21274 * 120.00960 * 0.02562 * 17 16 15 20 20 C 1.47063 * 87.88119 * 333.10069 * 16 15 14 21 21 H 1.08999 * 109.47035 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46997 * 300.00094 * 1 2 3 23 23 H 1.09000 * 109.47297 * 59.99751 * 1 2 3 24 24 H 1.09000 * 109.46997 * 239.99906 * 2 1 3 25 25 H 1.08993 * 109.46925 * 120.00177 * 2 1 3 26 26 H 0.96997 * 120.00204 * 179.97438 * 7 6 4 27 27 H 1.09001 * 113.28685 * 46.93415 * 14 12 3 28 28 H 1.09003 * 113.47007 * 24.87407 * 15 14 12 29 29 H 1.09002 * 113.52567 * 254.44058 * 15 14 12 30 30 H 1.08996 * 109.47344 * 60.00147 * 18 17 16 31 31 H 1.08995 * 109.46890 * 299.99673 * 18 17 16 32 32 H 1.09005 * 109.46801 * 180.02562 * 18 17 16 33 33 H 1.09008 * 113.46653 * 141.67535 * 20 16 15 34 34 H 1.08996 * 113.47165 * 272.11413 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3295 1.9983 -1.1840 5 1 2.8145 2.9633 -1.1789 6 6 2.0210 1.3822 -2.3907 7 7 1.0746 0.4718 -2.4405 8 14 2.9515 1.8480 -3.9420 9 1 4.2064 1.0581 -4.0225 10 1 2.1084 1.5601 -5.1301 11 1 3.2793 3.2958 -3.9067 12 6 2.1617 2.0453 1.1640 13 8 2.5663 3.1887 1.1641 14 6 1.8192 1.3672 2.4655 15 6 2.0324 2.2440 3.7072 16 7 0.7816 1.6912 4.2484 17 6 0.2668 1.4754 5.4751 18 6 -1.1031 0.8641 5.6205 19 8 0.9058 1.7730 6.4620 20 6 0.3426 1.4715 2.8621 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 0.8590 0.0420 -3.2829 27 1 2.2352 0.3633 2.5508 28 1 1.9800 3.3126 3.4983 29 1 2.9143 1.9707 4.2866 30 1 -1.1128 -0.1209 5.1538 31 1 -1.8397 1.5038 5.1346 32 1 -1.3475 0.7678 6.6784 33 1 -0.2092 0.5417 2.7237 34 1 -0.1643 2.3321 2.4257 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276215709.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:32 Heat of formation + Delta-G solvation = -16.301179 kcal Electronic energy + Delta-G solvation = -17735.232434 eV Core-core repulsion = 14863.471209 eV Total energy + Delta-G solvation = -2871.761225 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.44463 -38.55001 -37.04671 -35.11225 -31.92325 -30.94152 -29.55481 -28.48373 -25.74217 -25.32411 -22.75680 -22.11961 -19.01908 -18.54941 -17.04757 -16.79859 -16.60241 -15.59176 -15.25255 -14.63710 -14.17513 -13.93355 -13.57184 -12.93943 -12.79510 -12.65082 -12.37998 -12.33391 -12.13347 -11.85821 -11.53871 -11.31508 -11.13145 -10.84352 -10.49714 -10.34688 -10.20875 -9.92924 -9.77672 -8.97734 -8.65807 -8.34977 -7.84861 -6.42104 -3.87280 2.71994 2.99239 3.10228 3.21978 3.26426 3.67254 4.05503 4.53284 4.66440 4.87669 5.05940 5.15267 5.21719 5.34359 5.51302 5.57145 5.61338 5.70182 5.80975 5.89430 6.01287 6.12947 6.37840 6.50886 6.57547 6.69365 7.19957 7.40864 7.69386 7.87325 8.00564 8.24613 8.42250 9.09470 9.35085 9.89070 10.56194 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.047408 B = 0.006131 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.481058 B = 4565.953370 C = 5001.385060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.120 3.880 3 N -0.433 5.433 4 C -0.306 4.306 5 H 0.105 0.895 6 C 0.031 3.969 7 N -0.867 5.867 8 Si 0.922 3.078 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.270 1.270 12 C 0.449 3.551 13 O -0.590 6.590 14 C -0.137 4.137 15 C 0.125 3.875 16 N -0.649 5.649 17 C 0.537 3.463 18 C -0.167 4.167 19 O -0.557 6.557 20 C 0.119 3.881 21 H 0.036 0.964 22 H 0.026 0.974 23 H 0.095 0.905 24 H 0.102 0.898 25 H 0.032 0.968 26 H 0.267 0.733 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.621 -4.412 5.887 8.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.004 4.004 3 N -0.150 5.150 4 C -0.434 4.434 5 H 0.123 0.877 6 C -0.172 4.172 7 N -0.506 5.506 8 Si 0.749 3.251 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.195 1.195 12 C 0.236 3.764 13 O -0.476 6.476 14 C -0.159 4.159 15 C 0.002 3.998 16 N -0.385 5.385 17 C 0.328 3.672 18 C -0.226 4.226 19 O -0.435 6.435 20 C -0.004 4.004 21 H 0.055 0.945 22 H 0.045 0.955 23 H 0.113 0.887 24 H 0.120 0.880 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.129 0.871 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.282 -3.869 6.457 8.660 hybrid contribution 0.215 -0.071 -0.935 0.962 sum -4.067 -3.940 5.522 7.909 Atomic orbital electron populations 1.22278 0.96519 0.99921 1.02323 1.21480 0.94708 0.83491 1.00683 1.43833 1.54823 1.11335 1.05043 1.19773 1.36363 1.05381 0.81847 0.87708 1.25216 0.95775 0.97003 0.99240 1.70091 1.25769 1.27710 1.27056 0.86006 0.79479 0.79300 0.80348 1.20331 1.21082 1.19470 1.19318 0.86070 0.86792 0.84182 1.90527 1.52103 1.18297 1.86679 1.22870 0.97131 1.01017 0.94924 1.22848 0.87080 0.99626 0.90207 1.49779 1.21526 1.62183 1.05002 1.20325 0.88003 0.78236 0.80629 1.21848 0.93718 1.02251 1.04799 1.90699 1.62506 1.53616 1.36706 1.23036 0.96449 1.02251 0.78697 0.94452 0.95467 0.88655 0.88038 0.94979 0.92203 0.87068 0.88298 0.90589 0.89469 0.89526 0.89122 0.89705 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.66 37.16 0.36 -2.47 16 2 C 0.12 2.43 5.09 -4.04 -0.02 2.41 16 3 N -0.43 -10.19 2.63 -114.82 -0.30 -10.50 16 4 C -0.31 -7.98 9.45 -14.93 -0.14 -8.12 16 5 H 0.11 2.92 7.29 -52.49 -0.38 2.54 16 6 C 0.03 0.75 4.97 -17.47 -0.09 0.66 16 7 N -0.87 -20.73 8.33 55.50 0.46 -20.27 16 8 Si 0.92 19.57 29.61 -169.99 -5.03 14.53 16 9 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 10 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 12 C 0.45 10.11 7.17 -10.99 -0.08 10.03 16 13 O -0.59 -15.42 15.54 5.55 0.09 -15.33 16 14 C -0.14 -2.36 3.33 -91.39 -0.30 -2.66 16 15 C 0.12 2.12 7.97 -8.51 -0.07 2.05 16 16 N -0.65 -10.11 3.69 -185.38 -0.68 -10.79 16 17 C 0.54 8.32 8.19 -10.98 -0.09 8.23 16 18 C -0.17 -1.72 10.15 36.01 0.37 -1.36 16 19 O -0.56 -10.83 17.86 5.56 0.10 -10.73 16 20 C 0.12 1.75 6.25 -8.65 -0.05 1.70 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.03 0.44 4.75 -51.93 -0.25 0.20 16 23 H 0.09 2.09 6.21 -51.93 -0.32 1.77 16 24 H 0.10 2.27 5.89 -51.93 -0.31 1.97 16 25 H 0.03 0.56 6.36 -51.93 -0.33 0.23 16 26 H 0.27 6.12 8.31 -40.82 -0.34 5.78 16 27 H 0.11 1.74 6.90 -51.93 -0.36 1.38 16 28 H 0.10 1.81 7.45 -51.93 -0.39 1.42 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 33 H 0.08 1.06 6.95 -51.92 -0.36 0.70 16 34 H 0.09 1.40 8.10 -51.93 -0.42 0.98 16 LS Contribution 280.11 15.07 4.22 4.22 Total: -1.00 -30.14 280.11 -5.63 -35.77 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.36 Total: 2.61 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -0.12 Total: 10.48 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: -0.52 Total: -41.55 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: 0.19 Total: -26.06 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.14 -5.63 -35.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276215709.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.467 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds