Wall clock time and date at job start Sun Mar 29 2020 22:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.46856 * 2 1 4 4 C 1.37098 * 120.00200 * 265.75964 * 3 2 1 5 5 H 1.08001 * 120.00173 * 188.33771 * 4 3 2 6 6 C 1.38954 * 119.99834 * 8.34112 * 4 3 2 7 7 N 1.31408 * 120.00180 * 22.56729 * 6 4 3 8 8 Si 1.86801 * 119.99889 * 202.57035 * 6 4 3 9 9 H 1.48504 * 109.47008 * 84.98268 * 8 6 4 10 10 H 1.48500 * 109.46875 * 204.97778 * 8 6 4 11 11 H 1.48492 * 109.47276 * 324.98004 * 8 6 4 12 12 C 1.34781 * 120.00149 * 85.76677 * 3 2 1 13 13 O 1.21288 * 120.00084 * 179.97438 * 12 3 2 14 14 C 1.50695 * 119.99698 * 359.97438 * 12 3 2 15 15 C 1.53496 * 114.20448 * 179.97438 * 14 12 3 16 16 N 1.47076 * 87.98650 * 139.65062 * 15 14 12 17 17 C 1.34770 * 136.05325 * 152.84104 * 16 15 14 18 18 C 1.50711 * 119.99312 * 180.02562 * 17 16 15 19 19 O 1.21274 * 120.00960 * 0.02562 * 17 16 15 20 20 C 1.47063 * 87.88119 * 333.10069 * 16 15 14 21 21 H 1.08999 * 109.47035 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46997 * 300.00094 * 1 2 3 23 23 H 1.09000 * 109.47297 * 59.99751 * 1 2 3 24 24 H 1.09000 * 109.46997 * 239.99906 * 2 1 3 25 25 H 1.08993 * 109.46925 * 120.00177 * 2 1 3 26 26 H 0.96997 * 120.00204 * 179.97438 * 7 6 4 27 27 H 1.09001 * 113.28685 * 46.93415 * 14 12 3 28 28 H 1.09003 * 113.47007 * 24.87407 * 15 14 12 29 29 H 1.09002 * 113.52567 * 254.44058 * 15 14 12 30 30 H 1.08996 * 109.47344 * 60.00147 * 18 17 16 31 31 H 1.08995 * 109.46890 * 299.99673 * 18 17 16 32 32 H 1.09005 * 109.46801 * 180.02562 * 18 17 16 33 33 H 1.09008 * 113.46653 * 141.67535 * 20 16 15 34 34 H 1.08996 * 113.47165 * 272.11413 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3295 1.9983 -1.1840 5 1 2.8145 2.9633 -1.1789 6 6 2.0210 1.3822 -2.3907 7 7 1.0746 0.4718 -2.4405 8 14 2.9515 1.8480 -3.9420 9 1 4.2064 1.0581 -4.0225 10 1 2.1084 1.5601 -5.1301 11 1 3.2793 3.2958 -3.9067 12 6 2.1617 2.0453 1.1640 13 8 2.5663 3.1887 1.1641 14 6 1.8192 1.3672 2.4655 15 6 2.0324 2.2440 3.7072 16 7 0.7816 1.6912 4.2484 17 6 0.2668 1.4754 5.4751 18 6 -1.1031 0.8641 5.6205 19 8 0.9058 1.7730 6.4620 20 6 0.3426 1.4715 2.8621 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 0.8590 0.0420 -3.2829 27 1 2.2352 0.3633 2.5508 28 1 1.9800 3.3126 3.4983 29 1 2.9143 1.9707 4.2866 30 1 -1.1128 -0.1209 5.1538 31 1 -1.8397 1.5038 5.1346 32 1 -1.3475 0.7678 6.6784 33 1 -0.2092 0.5417 2.7237 34 1 -0.1643 2.3321 2.4257 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276215709.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:32 Heat of formation + Delta-G solvation = -36.566319 kcal Electronic energy + Delta-G solvation = -17736.111196 eV Core-core repulsion = 14863.471209 eV Total energy + Delta-G solvation = -2872.639987 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.82689 -40.07677 -38.50570 -36.92905 -33.75936 -32.13490 -31.16681 -29.65029 -27.09505 -26.98262 -24.27781 -23.68976 -20.49024 -19.93865 -18.77831 -18.29339 -18.00478 -16.94107 -16.71477 -16.14413 -15.87275 -15.55008 -15.06144 -14.42226 -14.22976 -13.98920 -13.71366 -13.55972 -13.30138 -13.17051 -12.96662 -12.92307 -12.79990 -12.54179 -12.12184 -11.97129 -11.76913 -11.54429 -11.07220 -10.75984 -10.27853 -9.81990 -9.66460 -8.28298 -5.81179 1.38309 1.46765 1.53587 1.55418 1.78145 1.98542 2.31341 3.00912 3.13976 3.38316 3.58134 3.88382 4.08289 4.17693 4.32868 4.43081 4.52215 4.55905 4.62685 4.67048 4.72571 4.95245 5.01932 5.08829 5.11727 5.26730 5.48053 5.59623 6.07217 6.11985 6.57768 6.68879 7.04093 7.22848 7.54843 8.09474 8.66783 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.047408 B = 0.006131 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.481058 B = 4565.953370 C = 5001.385060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.118 3.882 3 N -0.443 5.443 4 C -0.348 4.348 5 H 0.070 0.930 6 C 0.009 3.991 7 N -0.863 5.863 8 Si 0.976 3.024 9 H -0.272 1.272 10 H -0.273 1.273 11 H -0.282 1.282 12 C 0.441 3.559 13 O -0.639 6.639 14 C -0.129 4.129 15 C 0.119 3.881 16 N -0.645 5.645 17 C 0.531 3.469 18 C -0.157 4.157 19 O -0.603 6.603 20 C 0.131 3.869 21 H 0.064 0.936 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.273 0.727 27 H 0.136 0.864 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.172 -6.528 6.112 10.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.004 4.004 3 N -0.160 5.160 4 C -0.476 4.476 5 H 0.088 0.912 6 C -0.195 4.195 7 N -0.501 5.501 8 Si 0.801 3.199 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.207 1.207 12 C 0.230 3.770 13 O -0.528 6.528 14 C -0.151 4.151 15 C -0.005 4.005 16 N -0.380 5.380 17 C 0.324 3.676 18 C -0.215 4.215 19 O -0.485 6.485 20 C 0.009 3.991 21 H 0.083 0.917 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.154 0.846 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.132 0.868 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.141 0.859 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.874 -6.035 6.666 10.740 hybrid contribution 0.704 0.599 -1.018 1.375 sum -5.170 -5.435 5.648 9.390 Atomic orbital electron populations 1.22129 0.94975 1.01403 1.01605 1.21591 0.95962 0.81699 1.01185 1.44037 1.54793 1.12505 1.04617 1.19569 1.38755 1.05355 0.83881 0.91154 1.25755 0.95920 0.96930 1.00859 1.70174 1.25004 1.27129 1.27822 0.85212 0.78660 0.78272 0.77740 1.19777 1.19809 1.20711 1.20159 0.84832 0.86439 0.85591 1.90492 1.53994 1.20688 1.87652 1.22795 0.99458 1.01320 0.91509 1.22739 0.88404 0.98660 0.90688 1.49806 1.20775 1.61807 1.05611 1.21382 0.89367 0.77295 0.79530 1.21897 0.90191 1.03413 1.06048 1.90683 1.64149 1.55614 1.38089 1.22992 0.94767 1.03723 0.77654 0.91724 0.93335 0.92216 0.90354 0.91585 0.91671 0.84647 0.90426 0.90344 0.86785 0.87537 0.88327 0.85923 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 9.66 71.98 0.70 -4.21 16 2 C 0.12 4.57 5.09 86.38 0.44 5.01 16 3 N -0.44 -20.91 2.63 -635.55 -1.67 -22.58 16 4 C -0.35 -18.64 9.45 84.04 0.79 -17.85 16 5 H 0.07 4.17 7.29 -2.91 -0.02 4.15 16 6 C 0.01 0.43 4.97 84.93 0.42 0.86 16 7 N -0.86 -40.62 8.33 21.66 0.18 -40.44 16 8 Si 0.98 40.20 29.61 68.60 2.03 42.23 16 9 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 10 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 12 C 0.44 20.02 7.17 87.65 0.63 20.64 16 13 O -0.64 -34.83 15.54 -3.05 -0.05 -34.88 16 14 C -0.13 -4.22 3.33 -11.29 -0.04 -4.26 16 15 C 0.12 3.99 7.97 83.17 0.66 4.65 16 16 N -0.65 -18.68 3.69 -858.81 -3.17 -21.85 16 17 C 0.53 15.21 8.19 87.66 0.72 15.92 16 18 C -0.16 -2.59 10.15 71.24 0.72 -1.87 16 19 O -0.60 -22.93 17.86 -3.01 -0.05 -22.99 16 20 C 0.13 3.47 6.25 83.09 0.52 3.99 16 21 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.05 1.42 4.75 -2.39 -0.01 1.41 16 23 H 0.06 2.52 6.21 -2.39 -0.01 2.50 16 24 H 0.08 3.41 5.89 -2.39 -0.01 3.39 16 25 H 0.07 2.09 6.36 -2.39 -0.02 2.07 16 26 H 0.27 12.11 8.31 -92.71 -0.77 11.34 16 27 H 0.14 3.79 6.90 -2.39 -0.02 3.78 16 28 H 0.08 2.94 7.45 -2.39 -0.02 2.92 16 29 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.52 8.12 -2.38 -0.02 1.50 16 33 H 0.12 2.38 6.95 -2.38 -0.02 2.36 16 34 H 0.08 2.38 8.10 -2.39 -0.02 2.36 16 Total: -1.00 -68.29 280.11 3.94 -64.35 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.11 Total: 13.25 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 5.57 Total: 22.90 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -4.66 Total: -84.87 kcal Atomic # 8 Polarization: -57.76 SS G_CDS: -0.10 Total: -57.87 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -68.29 3.94 -64.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276215709.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.786 kcal (2) G-P(sol) polarization free energy of solvation -68.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds