Wall clock time and date at job start Sun Mar 29 2020 22:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99826 * 2 1 4 4 N 1.34770 * 120.00142 * 179.97438 * 2 1 3 5 5 C 1.47073 * 136.05543 * 359.63480 * 4 2 1 6 6 C 1.53754 * 87.88798 * 152.96024 * 5 4 2 7 7 C 1.50699 * 114.27160 * 139.79178 * 6 5 4 8 8 O 1.21289 * 119.99995 * 266.47737 * 7 6 5 9 9 N 1.34774 * 120.00086 * 86.46884 * 7 6 5 10 10 C 1.46506 * 119.99694 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46632 * 180.02562 * 10 9 7 12 12 C 1.50707 * 109.46994 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99468 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00045 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00203 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99916 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47116 * 60.00148 * 16 14 12 18 18 H 1.48499 * 109.47044 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47136 * 300.00028 * 16 14 12 20 20 C 1.47068 * 136.06023 * 179.97438 * 4 2 1 21 21 H 1.09002 * 109.47152 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.99928 * 1 2 3 23 23 H 1.09004 * 109.47113 * 299.99909 * 1 2 3 24 24 H 1.08996 * 113.46538 * 267.68779 * 5 4 2 25 25 H 1.08992 * 113.47227 * 38.13099 * 5 4 2 26 26 H 1.09004 * 114.39189 * 272.67300 * 6 5 4 27 27 H 0.97001 * 120.00137 * 0.02562 * 9 7 6 28 28 H 1.08989 * 109.47594 * 300.00238 * 10 9 7 29 29 H 1.08999 * 109.47007 * 60.00871 * 10 9 7 30 30 H 1.09001 * 109.47288 * 299.99981 * 11 10 9 31 31 H 1.08991 * 109.47393 * 60.00210 * 11 10 9 32 32 H 0.96999 * 120.00449 * 179.97438 * 15 14 12 33 33 H 1.08999 * 113.47108 * 321.87539 * 20 4 2 34 34 H 1.09004 * 113.46417 * 92.31140 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.8265 -2.5945 0.0077 6 6 3.1645 -2.8718 -0.6972 7 6 3.8800 -4.1037 -0.2058 8 8 4.7143 -4.0118 0.6697 9 7 3.5926 -5.3077 -0.7389 10 6 4.2877 -6.5054 -0.2607 11 6 3.7798 -7.7293 -1.0255 12 6 4.4944 -8.9615 -0.5331 13 1 5.2369 -8.8796 0.2469 14 6 4.2003 -10.1931 -1.0785 15 7 3.2958 -10.2929 -2.0280 16 14 5.0866 -11.7203 -0.4687 17 1 4.8246 -11.8985 0.9821 18 1 4.5935 -12.9082 -1.2109 19 1 6.5466 -11.5680 -0.6930 20 6 3.5942 -1.5740 0.0002 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 1.7666 -3.0218 1.0086 25 1 0.9553 -2.8286 -0.6040 26 1 3.1235 -2.8023 -1.7843 27 1 2.9255 -5.3813 -1.4393 28 1 5.3593 -6.3936 -0.4252 29 1 4.0953 -6.6363 0.8042 30 1 2.7080 -7.8414 -0.8613 31 1 3.9725 -7.5982 -2.0902 32 1 3.0891 -11.1593 -2.4119 33 1 4.2287 -0.9386 -0.6177 34 1 4.0005 -1.7321 0.9993 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276514758.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:40 Heat of formation + Delta-G solvation = -47.343511 kcal Electronic energy + Delta-G solvation = -16455.671952 eV Core-core repulsion = 13582.564631 eV Total energy + Delta-G solvation = -2873.107321 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.95123 -39.07475 -37.53016 -34.95395 -32.91699 -31.46004 -29.97813 -28.67156 -26.20032 -25.20731 -23.24956 -21.00777 -20.02666 -19.19322 -17.55713 -17.15754 -16.46453 -16.04694 -15.50403 -15.04741 -15.00334 -14.54575 -14.18081 -13.42312 -13.29013 -13.01981 -12.81296 -12.63973 -12.52195 -12.32798 -12.12043 -11.27903 -11.08989 -11.01023 -10.70070 -10.39581 -10.21169 -9.88307 -9.54893 -9.30112 -8.96744 -8.63958 -8.43045 -6.14283 -4.17505 2.36094 2.54133 2.71942 3.27960 3.32147 3.34658 3.56950 4.03013 4.21220 4.37640 4.62920 4.80363 4.92207 5.02690 5.12104 5.14000 5.22920 5.22992 5.38015 5.45584 5.59131 5.84096 6.24684 6.26398 6.65344 6.78684 7.43072 7.44953 7.54551 7.82883 7.87130 7.89513 8.21111 8.48952 8.88213 9.47772 10.97180 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.062862 B = 0.003613 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.311638 B = 7747.769222 C = 8029.329343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.541 3.459 3 O -0.549 6.549 4 N -0.650 5.650 5 C 0.118 3.882 6 C -0.154 4.154 7 C 0.518 3.482 8 O -0.545 6.545 9 N -0.716 5.716 10 C 0.120 3.880 11 C 0.013 3.987 12 C -0.524 4.524 13 H 0.059 0.941 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.124 3.876 21 H 0.076 0.924 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.127 0.873 27 H 0.399 0.601 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.263 0.737 33 H 0.083 0.917 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.962 14.483 1.089 16.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.332 3.668 3 O -0.426 6.426 4 N -0.386 5.386 5 C -0.005 4.005 6 C -0.177 4.177 7 C 0.302 3.698 8 O -0.423 6.423 9 N -0.365 5.365 10 C -0.002 4.002 11 C -0.025 4.025 12 C -0.563 4.563 13 H 0.077 0.923 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C 0.002 3.998 21 H 0.095 0.905 22 H 0.114 0.886 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.108 0.892 26 H 0.145 0.855 27 H 0.233 0.767 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.259 15.178 1.604 16.496 hybrid contribution 0.062 -1.098 -0.125 1.107 sum -6.197 14.080 1.480 15.455 Atomic orbital electron populations 1.21809 0.91013 1.04404 1.05277 1.20408 0.90128 0.81206 0.75102 1.90733 1.70797 1.30309 1.50793 1.49734 1.09878 1.05534 1.73461 1.22973 0.96892 0.79330 1.01339 1.23198 0.97597 0.94395 1.02461 1.19968 0.83034 0.84267 0.82522 1.90705 1.33959 1.86291 1.31333 1.46346 1.42414 1.07443 1.40320 1.21773 0.96045 0.83437 0.98971 1.19321 0.97086 0.90421 0.95634 1.21011 1.22596 0.91574 1.21085 0.92287 1.24988 0.95129 0.99221 0.94874 1.69936 1.32161 1.24955 1.26236 0.86570 0.80037 0.81959 0.78964 1.20085 1.21228 1.20093 1.22828 0.83807 0.91224 1.01966 0.90482 0.88631 0.88601 0.88764 0.89152 0.85508 0.76703 0.92410 0.92411 0.95902 0.95909 0.92742 0.89833 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.36 36.01 0.37 -0.78 16 2 C 0.54 6.31 8.19 -10.99 -0.09 6.22 16 3 O -0.55 -8.83 17.88 5.56 0.10 -8.73 16 4 N -0.65 -6.96 3.69 -185.05 -0.68 -7.64 16 5 C 0.12 1.00 7.58 -8.36 -0.06 0.94 16 6 C -0.15 -1.57 4.50 -91.13 -0.41 -1.98 16 7 C 0.52 7.53 7.40 -10.99 -0.08 7.45 16 8 O -0.54 -10.10 15.95 5.55 0.09 -10.01 16 9 N -0.72 -10.91 5.56 -60.29 -0.33 -11.25 16 10 C 0.12 2.36 5.61 -4.04 -0.02 2.34 16 11 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 12 C -0.52 -14.06 9.11 -34.44 -0.31 -14.37 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -25.41 13.29 55.43 0.74 -24.68 16 16 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C 0.12 1.42 7.96 -8.51 -0.07 1.35 16 21 H 0.08 0.40 7.31 -51.93 -0.38 0.02 16 22 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 25 H 0.09 0.53 7.94 -51.93 -0.41 0.12 16 26 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.40 5.07 8.47 -40.82 -0.35 4.73 16 28 H 0.06 1.20 8.14 -51.94 -0.42 0.78 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 1.27 7.46 -51.93 -0.39 0.88 16 LS Contribution 298.94 15.07 4.50 4.50 Total: -1.00 -33.45 298.94 -6.39 -39.84 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.87 Total: -0.74 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -0.92 Total: 2.86 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.28 Total: -43.57 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.19 Total: -18.74 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.45 -6.39 -39.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276514758.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.500 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds