Wall clock time and date at job start Sun Mar 29 2020 22:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46767 * 124.34555 * 2 1 4 4 C 1.54661 * 105.38019 * 162.85758 * 3 2 1 5 5 H 1.09000 * 110.85477 * 143.78464 * 4 3 2 6 6 N 1.46496 * 111.19143 * 267.59113 * 4 3 2 7 7 C 1.34781 * 120.00155 * 198.86293 * 6 4 3 8 8 O 1.21277 * 119.99547 * 359.97438 * 7 6 4 9 9 C 1.50700 * 119.99848 * 180.02562 * 7 6 4 10 10 C 1.53000 * 109.46826 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47204 * 179.97438 * 10 9 7 12 12 H 1.07996 * 120.00140 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99992 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00014 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00001 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46701 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47000 * 119.99492 * 15 13 11 18 18 H 1.48495 * 109.46811 * 239.99947 * 15 13 11 19 19 C 1.54634 * 101.68374 * 25.76340 * 4 3 2 20 20 C 1.34414 * 124.34903 * 180.30032 * 2 1 3 21 21 O 1.21278 * 124.94295 * 0.42988 * 20 2 1 22 22 H 1.09001 * 109.47060 * 179.72990 * 1 2 3 23 23 H 1.09004 * 109.47073 * 299.72478 * 1 2 3 24 24 H 1.09000 * 109.47212 * 59.72561 * 1 2 3 25 25 H 1.08997 * 110.24165 * 281.98114 * 3 2 1 26 26 H 1.08996 * 110.24976 * 43.98254 * 3 2 1 27 27 H 0.97001 * 119.99911 * 18.86758 * 6 4 3 28 28 H 1.08995 * 109.46951 * 299.99480 * 9 7 6 29 29 H 1.08997 * 109.47141 * 60.00137 * 9 7 6 30 30 H 1.09002 * 109.47330 * 300.00177 * 10 9 7 31 31 H 1.09006 * 109.47279 * 59.99673 * 10 9 7 32 32 H 0.96993 * 119.99725 * 179.97438 * 14 13 11 33 33 H 1.09002 * 110.48619 * 216.31103 * 19 4 3 34 34 H 1.08996 * 110.48335 * 93.66911 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7010 0.7465 0.4395 5 1 4.4758 1.3014 -0.0895 6 7 3.8702 0.8681 1.8896 7 6 5.1071 0.8835 2.4248 8 8 6.0800 0.7963 1.7060 9 6 5.2811 1.0079 3.9166 10 6 6.7723 0.9997 4.2585 11 6 6.9464 1.1248 5.7502 12 1 6.0801 1.2028 6.3903 13 6 8.2118 1.1407 6.2977 14 7 9.2668 1.0462 5.5182 15 14 8.4275 1.2964 8.1467 16 1 7.0945 1.3871 8.7946 17 1 9.1494 0.1057 8.6628 18 1 9.2102 2.5208 8.4522 19 6 3.6898 -0.7378 0.0062 20 6 2.2235 -1.1097 -0.0058 21 8 1.7946 -2.2441 -0.0192 22 1 -0.3633 -1.0277 -0.0048 23 1 -0.3633 0.5096 0.8925 24 1 -0.3634 0.5181 -0.8875 25 1 2.3306 1.6429 -1.0004 26 1 1.8984 1.9384 0.7101 27 1 3.0921 0.9374 2.4646 28 1 4.8349 1.9421 4.2577 29 1 4.7908 0.1692 4.4108 30 1 7.2182 0.0654 3.9174 31 1 7.2631 1.8382 3.7642 32 1 10.1569 1.0577 5.9033 33 1 4.2327 -1.3497 0.7266 34 1 4.1194 -0.8477 -0.9895 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291785729.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:32 Heat of formation + Delta-G solvation = -105.858334 kcal Electronic energy + Delta-G solvation = -16852.485332 eV Core-core repulsion = 13976.840617 eV Total energy + Delta-G solvation = -2875.644714 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.74951 -40.32649 -37.74722 -35.59798 -35.30216 -33.20737 -32.13309 -28.68484 -27.90783 -27.03465 -24.08604 -22.34056 -21.38919 -20.52799 -18.83265 -18.02623 -17.81529 -17.24223 -16.67520 -16.48712 -16.35486 -15.97192 -14.96763 -14.75348 -14.57913 -14.28468 -14.17591 -13.64099 -13.39419 -13.20053 -13.17700 -12.97015 -12.83558 -12.49063 -12.42096 -11.90339 -11.62026 -11.26742 -11.10224 -10.74454 -10.56358 -10.13698 -9.77113 -8.17023 -6.30499 1.43285 1.44302 1.44644 1.57447 1.70568 2.01206 2.18093 2.45101 3.16420 3.27960 3.42082 3.76203 4.06490 4.19806 4.39735 4.47270 4.51943 4.58292 4.61578 4.69630 4.80203 4.84436 4.90786 5.12029 5.44278 5.50330 5.54315 5.66283 5.87694 5.97861 6.19591 6.56637 6.88527 7.05025 7.33544 7.39943 8.95718 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.047747 B = 0.004188 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.278210 B = 6683.655400 C = 6786.175870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.619 5.619 3 C 0.107 3.893 4 C 0.132 3.868 5 H 0.116 0.884 6 N -0.713 5.713 7 C 0.517 3.483 8 O -0.579 6.579 9 C -0.121 4.121 10 C 0.040 3.960 11 C -0.542 4.542 12 H 0.075 0.925 13 C -0.006 4.006 14 N -0.937 5.937 15 Si 0.972 3.028 16 H -0.253 1.253 17 H -0.282 1.282 18 H -0.280 1.280 19 C -0.168 4.168 20 C 0.513 3.487 21 O -0.584 6.584 22 H 0.062 0.938 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.415 0.585 28 H 0.108 0.892 29 H 0.098 0.902 30 H -0.019 1.019 31 H -0.013 1.013 32 H 0.262 0.738 33 H 0.080 0.920 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.654 3.776 -10.490 22.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.353 5.353 3 C -0.015 4.015 4 C 0.026 3.974 5 H 0.134 0.866 6 N -0.367 5.367 7 C 0.306 3.694 8 O -0.458 6.458 9 C -0.161 4.161 10 C 0.003 3.997 11 C -0.580 4.580 12 H 0.093 0.907 13 C -0.204 4.204 14 N -0.577 5.577 15 Si 0.796 3.204 16 H -0.177 1.177 17 H -0.208 1.208 18 H -0.205 1.205 19 C -0.209 4.209 20 C 0.302 3.698 21 O -0.465 6.465 22 H 0.081 0.919 23 H 0.103 0.897 24 H 0.105 0.895 25 H 0.137 0.863 26 H 0.133 0.867 27 H 0.252 0.748 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.000 1.000 31 H 0.005 0.995 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.132 3.161 -11.010 22.299 hybrid contribution 0.457 -0.281 0.965 1.104 sum -18.675 2.880 -10.044 21.400 Atomic orbital electron populations 1.21772 0.76393 1.03283 1.03843 1.48310 1.07600 1.07006 1.72348 1.22613 0.87015 0.86700 1.05205 1.21918 0.99178 0.94394 0.81887 0.86628 1.45934 1.07898 1.75221 1.07640 1.21236 0.82645 0.73954 0.91571 1.90670 1.40910 1.50458 1.63747 1.21642 0.99679 1.04728 0.90060 1.18705 0.91042 0.94831 0.95138 1.21758 0.92978 1.50089 0.93197 0.90720 1.26105 0.95794 0.94770 1.03684 1.70175 0.98691 1.51445 1.37407 0.85303 0.78838 0.77534 0.78752 1.17693 1.20827 1.20545 1.22815 0.93695 0.98856 1.05566 1.21120 0.90030 0.84296 0.74363 1.90688 1.79512 1.23226 1.53044 0.91930 0.89743 0.89536 0.86312 0.86658 0.74777 0.87383 0.88350 1.00042 0.99489 0.92889 0.90113 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 11.14 127.77 1.42 2.40 16 2 N -0.62 -9.70 3.33 -842.52 -2.81 -12.51 16 3 C 0.11 1.07 6.98 86.89 0.61 1.68 16 4 C 0.13 2.45 3.42 46.11 0.16 2.61 16 5 H 0.12 2.28 7.73 -2.39 -0.02 2.26 16 6 N -0.71 -16.23 5.17 -437.24 -2.26 -18.49 16 7 C 0.52 18.22 7.83 87.66 0.69 18.90 16 8 O -0.58 -26.15 15.72 -3.02 -0.05 -26.20 16 9 C -0.12 -4.63 5.64 29.85 0.17 -4.46 16 10 C 0.04 2.21 4.26 29.85 0.13 2.33 16 11 C -0.54 -30.51 9.11 25.60 0.23 -30.27 16 12 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 13 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 14 N -0.94 -59.03 13.29 21.45 0.28 -58.75 16 15 Si 0.97 44.04 29.54 68.60 2.03 46.06 16 16 H -0.25 -10.59 7.11 99.48 0.71 -9.89 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 19 C -0.17 -3.82 6.58 30.59 0.20 -3.62 16 20 C 0.51 12.61 8.02 87.90 0.71 13.32 16 21 O -0.58 -19.83 17.35 -3.02 -0.05 -19.88 16 22 H 0.06 0.98 7.53 -2.39 -0.02 0.97 16 23 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 24 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.12 0.65 8.05 -2.39 -0.02 0.63 16 27 H 0.42 6.90 8.59 -92.71 -0.80 6.10 16 28 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 29 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 30 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 31 H -0.01 -0.81 8.10 -2.38 -0.02 -0.83 16 32 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.08 2.33 8.09 -2.39 -0.02 2.31 16 34 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -82.70 295.25 2.22 -80.48 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 0.30 Total: 6.28 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 4.77 Total: 3.01 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -4.78 Total: -89.75 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -0.10 Total: -46.08 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -82.70 2.22 -80.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291785729.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.377 kcal (2) G-P(sol) polarization free energy of solvation -82.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds