Wall clock time and date at job start Sun Mar 29 2020 22:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.45655 * 117.70539 * 2 1 4 4 C 1.53461 * 110.73947 * 157.95628 * 3 2 1 5 5 N 1.47269 * 107.93519 * 46.91184 * 4 3 2 6 6 C 1.34784 * 121.35305 * 118.51221 * 5 4 3 7 7 O 1.21283 * 119.99649 * 359.71730 * 6 5 4 8 8 C 1.50697 * 119.99774 * 179.44626 * 6 5 4 9 9 C 1.53003 * 109.46624 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.46956 * 179.97438 * 9 8 6 11 11 H 1.08004 * 119.99792 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00025 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00107 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99859 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46781 * 90.00624 * 14 12 10 16 16 H 1.48505 * 109.47305 * 210.00006 * 14 12 10 17 17 H 1.48494 * 109.47296 * 330.00194 * 14 12 10 18 18 C 1.47046 * 117.29467 * 298.24185 * 5 4 3 19 19 C 1.33383 * 117.70720 * 179.97438 * 2 1 3 20 20 O 1.21276 * 118.48889 * 4.36035 * 19 2 1 21 21 H 1.09004 * 109.46732 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.46836 * 300.01792 * 1 2 3 23 23 H 1.09001 * 109.46934 * 60.01971 * 1 2 3 24 24 H 1.08997 * 109.21559 * 278.41182 * 3 2 1 25 25 H 1.08996 * 109.21452 * 37.74336 * 3 2 1 26 26 H 1.09006 * 109.85155 * 287.32233 * 4 3 2 27 27 H 1.09000 * 109.84275 * 166.50651 * 4 3 2 28 28 H 1.09001 * 109.46809 * 299.99238 * 8 6 5 29 29 H 1.08993 * 109.47525 * 59.99679 * 8 6 5 30 30 H 1.09001 * 109.46782 * 299.99104 * 9 8 6 31 31 H 1.08993 * 109.47555 * 59.99547 * 9 8 6 32 32 H 0.97000 * 119.99849 * 179.97438 * 13 12 10 33 33 H 1.09005 * 109.57083 * 162.80928 * 18 5 4 34 34 H 1.08997 * 109.57128 * 283.04318 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1422 1.2896 0.0000 4 6 3.5726 1.1522 0.5386 5 7 4.1973 -0.0055 -0.1234 6 6 5.2937 0.1351 -0.8946 7 8 5.7828 1.2327 -1.0590 8 6 5.9154 -1.0724 -1.5477 9 6 7.1375 -0.6400 -2.3603 10 6 7.7596 -1.8476 -3.0129 11 1 7.3268 -2.8257 -2.8627 12 6 8.8813 -1.7038 -3.8017 13 7 9.4080 -0.5128 -3.9851 14 14 9.6528 -3.2008 -4.6101 15 1 9.0431 -3.4102 -5.9479 16 1 11.1142 -2.9841 -4.7606 17 1 9.4144 -4.3980 -3.7645 18 6 3.5799 -1.3219 0.0960 19 6 2.0852 -1.1809 0.0005 20 8 1.4132 -2.1872 -0.0801 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5141 0.8898 23 1 -0.3633 0.5135 -0.8902 24 1 2.1757 1.6772 -1.0182 25 1 1.5884 1.9855 0.6300 26 1 3.5484 0.9905 1.6164 27 1 4.1407 2.0550 0.3143 28 1 6.2227 -1.7827 -0.7801 29 1 5.1875 -1.5434 -2.2082 30 1 6.8306 0.0704 -3.1279 31 1 7.8653 -0.1692 -1.6995 32 1 10.1973 -0.4117 -4.5397 33 1 3.9300 -2.0206 -0.6639 34 1 3.8509 -1.6920 1.0847 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292268112.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:43 Heat of formation + Delta-G solvation = -65.898915 kcal Electronic energy + Delta-G solvation = -17240.691475 eV Core-core repulsion = 14366.779531 eV Total energy + Delta-G solvation = -2873.911944 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.79723 -39.03618 -36.46866 -34.88134 -33.53665 -31.35749 -30.09085 -28.67132 -26.04389 -25.50986 -23.85604 -21.49794 -19.82838 -18.31697 -17.32712 -17.24684 -16.32951 -16.23851 -15.56956 -15.30417 -15.04940 -14.43001 -13.80243 -13.77019 -13.51912 -12.93485 -12.66513 -12.32913 -12.17644 -12.13620 -12.08866 -11.62601 -11.15975 -10.93970 -10.60096 -10.38196 -10.00778 -9.67920 -9.27065 -9.07873 -9.02213 -8.64225 -8.33632 -5.97807 -4.02298 2.37769 2.63284 3.00072 3.10192 3.33460 3.39724 3.42499 4.21947 4.45269 4.51168 4.84788 4.89155 5.05735 5.15054 5.22215 5.23001 5.32083 5.37539 5.61000 5.63439 5.65423 6.00492 6.11877 6.14051 6.40474 6.79885 7.14821 7.44836 7.71750 7.81323 7.89725 8.03699 8.34106 8.55408 9.05559 9.61655 11.13132 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.038923 B = 0.005097 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.194878 B = 5491.821037 C = 5990.571157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.606 5.606 3 C 0.100 3.900 4 C 0.096 3.904 5 N -0.633 5.633 6 C 0.520 3.480 7 O -0.525 6.525 8 C -0.131 4.131 9 C 0.037 3.963 10 C -0.528 4.528 11 H 0.056 0.944 12 C 0.059 3.941 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.101 3.899 19 C 0.511 3.489 20 O -0.548 6.548 21 H 0.092 0.908 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.261 0.739 33 H 0.126 0.874 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.125 2.571 10.513 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.339 5.339 3 C -0.024 4.024 4 C -0.028 4.028 5 N -0.371 5.371 6 C 0.311 3.689 7 O -0.399 6.399 8 C -0.171 4.171 9 C 0.000 4.000 10 C -0.566 4.566 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.529 5.529 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.025 4.025 19 C 0.299 3.701 20 O -0.426 6.426 21 H 0.110 0.890 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.093 0.907 27 H 0.131 0.869 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.997 2.751 10.263 19.204 hybrid contribution 0.352 -0.663 -0.425 0.862 sum -15.645 2.088 9.839 18.599 Atomic orbital electron populations 1.21805 0.79584 1.04743 1.01327 1.47134 1.07655 1.06187 1.72935 1.21900 0.93524 0.84367 1.02570 1.21963 0.91741 0.92211 0.96857 1.48475 1.30272 1.07126 1.51274 1.21653 0.78054 0.92492 0.76746 1.90674 1.60868 1.28140 1.60211 1.21948 1.00930 0.94117 1.00120 1.18916 0.89954 0.96621 0.94535 1.21208 1.11718 0.93715 1.29971 0.92533 1.25013 0.96972 0.95800 0.96506 1.69994 1.22202 1.21918 1.38740 0.86586 0.78461 0.83084 0.79803 1.20658 1.21216 1.19831 1.21843 0.88081 0.87116 1.05467 1.20429 0.91019 0.82978 0.75692 1.90728 1.65686 1.35658 1.50482 0.88970 0.92135 0.92143 0.90998 0.89572 0.90697 0.86923 0.89866 0.90050 0.95799 0.95712 0.92929 0.85587 0.87881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 10.43 59.85 0.62 1.21 16 2 N -0.61 -6.53 3.20 -182.48 -0.58 -7.12 16 3 C 0.10 0.90 6.60 -4.26 -0.03 0.87 16 4 C 0.10 1.02 6.56 -3.38 -0.02 1.00 16 5 N -0.63 -8.75 2.97 -173.86 -0.52 -9.27 16 6 C 0.52 9.61 7.72 -10.98 -0.08 9.53 16 7 O -0.52 -11.67 15.46 5.56 0.09 -11.59 16 8 C -0.13 -2.61 4.09 -27.88 -0.11 -2.72 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.87 16 10 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 11 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 14 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 C 0.10 1.22 6.40 -5.02 -0.03 1.18 16 19 C 0.51 6.66 7.58 -11.73 -0.09 6.57 16 20 O -0.55 -8.71 15.97 5.56 0.09 -8.62 16 21 H 0.09 0.95 6.59 -51.93 -0.34 0.61 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.09 0.52 8.07 -51.93 -0.42 0.10 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.11 1.32 7.06 -51.93 -0.37 0.95 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.08 1.50 7.56 -51.93 -0.39 1.11 16 30 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.13 1.55 6.26 -51.93 -0.33 1.22 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 286.60 15.07 4.32 4.32 Total: -1.00 -35.07 286.60 -5.93 -41.00 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -4.76 Total: -3.80 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.28 Total: 4.97 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -0.37 Total: -42.86 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.17 Total: -20.21 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -35.07 -5.93 -41.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292268112.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.898 kcal (2) G-P(sol) polarization free energy of solvation -35.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds