Wall clock time and date at job start Sun Mar 29 2020 22:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34771 * 119.99969 * 2 1 4 4 O 1.21279 * 120.00536 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99797 * 180.02562 * 3 2 1 6 6 C 1.53492 * 114.20908 * 180.02562 * 5 3 2 7 7 N 1.47062 * 87.98719 * 220.14614 * 6 5 3 8 8 C 1.34776 * 136.05806 * 207.08628 * 7 6 5 9 9 O 1.21282 * 119.99940 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.53006 * 109.47184 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47309 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47510 * 119.99847 * 16 14 12 19 19 H 1.48506 * 109.47246 * 239.99882 * 16 14 12 20 20 C 1.47064 * 87.88775 * 27.33992 * 7 6 5 21 21 H 1.09011 * 109.46724 * 60.00087 * 1 2 3 22 22 H 1.09001 * 109.47668 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47326 * 300.00314 * 1 2 3 24 24 H 0.97005 * 119.99383 * 179.97438 * 2 1 3 25 25 H 1.09008 * 113.27928 * 313.06818 * 5 3 2 26 26 H 1.09000 * 113.47214 * 105.36253 * 6 5 3 27 27 H 1.09008 * 113.51999 * 334.93344 * 6 5 3 28 28 H 1.09001 * 109.47612 * 59.99945 * 10 8 7 29 29 H 1.09001 * 109.47122 * 299.99777 * 10 8 7 30 30 H 1.09001 * 109.47002 * 299.99404 * 11 10 8 31 31 H 1.08993 * 109.46955 * 59.99842 * 11 10 8 32 32 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 33 33 H 1.09006 * 113.46975 * 87.43340 * 20 7 6 34 34 H 1.08996 * 113.47171 * 217.88169 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 6 4.2753 2.5670 0.0001 7 7 5.2784 2.0598 -0.9482 8 6 6.5525 2.3621 -1.2671 9 8 7.1235 3.2649 -0.6928 10 6 7.2673 1.5791 -2.3381 11 6 8.6886 2.1209 -2.5033 12 6 9.4032 1.3383 -3.5748 13 1 8.8945 0.5346 -4.0864 14 6 10.7065 1.6477 -3.9011 15 7 11.3261 2.6260 -3.2777 16 14 11.5925 0.6771 -5.2287 17 1 10.6825 -0.3632 -5.7720 18 1 12.0043 1.5947 -6.3213 19 1 12.7952 0.0278 -4.6480 20 6 4.2773 1.0818 -1.3999 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.9499 -0.8401 0.0004 25 1 4.0769 0.4832 0.7306 26 1 4.6953 2.8537 0.9642 27 1 3.6278 3.3353 -0.4226 28 1 6.7293 1.6782 -3.2809 29 1 7.3096 0.5280 -2.0527 30 1 8.6459 3.1719 -2.7891 31 1 9.2269 2.0222 -1.5607 32 1 12.2431 2.8434 -3.5070 33 1 3.6296 1.4577 -2.1920 34 1 4.6990 0.1030 -1.6285 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293113621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:52 Heat of formation + Delta-G solvation = -42.244003 kcal Electronic energy + Delta-G solvation = -16589.485031 eV Core-core repulsion = 13716.598841 eV Total energy + Delta-G solvation = -2872.886190 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.89542 -39.08321 -37.28688 -34.91907 -33.46213 -31.23051 -30.05971 -27.43986 -26.15937 -25.42137 -23.27908 -21.19664 -20.34794 -18.67542 -17.86364 -16.96983 -16.24196 -16.05016 -15.49768 -15.25293 -14.92847 -14.40324 -14.34471 -13.42490 -13.09061 -12.91375 -12.70851 -12.60326 -12.49748 -12.15421 -11.92357 -11.19437 -10.95317 -10.87788 -10.58808 -10.22747 -9.97671 -9.67705 -9.50918 -9.19872 -9.03085 -8.54157 -8.32653 -5.96655 -4.01309 2.25567 2.74508 3.03357 3.29104 3.32193 3.39284 3.42435 4.00290 4.44944 4.50024 4.66319 4.84275 4.90310 5.11418 5.14488 5.27206 5.38286 5.41239 5.43693 5.63994 5.84475 6.00568 6.05298 6.21229 6.27939 6.87486 7.08562 7.73737 7.84820 7.87005 7.96160 8.06439 8.37022 8.69655 9.07108 9.62281 11.14375 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.049404 B = 0.003985 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.621162 B = 7025.378777 C = 7482.100428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.734 5.734 3 C 0.528 3.472 4 O -0.533 6.533 5 C -0.159 4.159 6 C 0.123 3.877 7 N -0.657 5.657 8 C 0.541 3.459 9 O -0.527 6.527 10 C -0.121 4.121 11 C 0.035 3.965 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.123 3.877 21 H 0.060 0.940 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.404 0.596 25 H 0.128 0.872 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.261 0.739 33 H 0.086 0.914 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.797 -9.177 5.945 23.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.386 5.386 3 C 0.313 3.687 4 O -0.409 6.409 5 C -0.181 4.181 6 C 0.000 4.000 7 N -0.396 5.396 8 C 0.333 3.667 9 O -0.401 6.401 10 C -0.161 4.161 11 C -0.002 4.002 12 C -0.565 4.565 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.001 4.001 21 H 0.079 0.921 22 H 0.094 0.906 23 H 0.078 0.922 24 H 0.238 0.762 25 H 0.146 0.854 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.491 -7.744 6.199 22.766 hybrid contribution 0.616 -0.987 -0.712 1.364 sum -19.876 -8.731 5.487 22.391 Atomic orbital electron populations 1.21556 0.79544 1.02281 1.02434 1.45825 1.07840 1.08840 1.76105 1.20291 0.89264 0.83635 0.75464 1.90728 1.70115 1.31340 1.48732 1.23282 0.91536 1.02089 1.01180 1.22690 0.87978 0.94147 0.95176 1.49863 1.10727 1.37859 1.41171 1.21301 0.78130 0.83696 0.83540 1.90695 1.64867 1.31267 1.53305 1.21838 1.00102 0.99318 0.94843 1.18938 0.87005 0.96785 0.97486 1.21237 0.97779 1.17295 1.20170 0.92531 1.25032 0.97596 0.95246 0.96556 1.70007 1.12095 1.29151 1.41524 0.86524 0.79681 0.79942 0.81733 1.19748 1.21003 1.21011 1.22774 0.88596 0.94732 0.93990 0.92124 0.90598 0.92193 0.76175 0.85433 0.90058 0.88833 0.90252 0.90234 0.95760 0.95726 0.92969 0.89599 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.70 59.85 0.64 1.11 16 2 N -0.73 -4.62 5.71 -67.08 -0.38 -5.00 16 3 C 0.53 5.12 7.40 -10.99 -0.08 5.03 16 4 O -0.53 -7.36 15.95 5.56 0.09 -7.28 16 5 C -0.16 -1.45 4.50 -91.12 -0.41 -1.87 16 6 C 0.12 1.60 7.96 -8.51 -0.07 1.54 16 7 N -0.66 -10.04 3.69 -185.06 -0.68 -10.73 16 8 C 0.54 11.02 8.08 -10.99 -0.09 10.93 16 9 O -0.53 -13.13 16.76 5.56 0.09 -13.03 16 10 C -0.12 -2.51 5.47 -27.88 -0.15 -2.67 16 11 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 12 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 13 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.54 13.29 55.43 0.74 -26.80 16 16 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 C 0.12 1.26 8.00 -8.37 -0.07 1.19 16 21 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 22 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.40 1.35 8.83 -40.82 -0.36 0.99 16 25 H 0.13 0.91 8.14 -51.92 -0.42 0.49 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.09 1.27 7.46 -51.92 -0.39 0.88 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 298.97 15.07 4.51 4.51 Total: -1.00 -37.26 298.97 -6.35 -43.61 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -4.93 Total: -4.29 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.76 Total: 2.40 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -0.33 Total: -42.53 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.18 Total: -20.31 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -37.26 -6.35 -43.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293113621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.366 kcal (2) G-P(sol) polarization free energy of solvation -37.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds