Wall clock time and date at job start Sun Mar 29 2020 22:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34771 * 119.99969 * 2 1 4 4 O 1.21279 * 120.00536 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99797 * 180.02562 * 3 2 1 6 6 C 1.53492 * 114.20908 * 180.02562 * 5 3 2 7 7 N 1.47062 * 87.98719 * 220.14614 * 6 5 3 8 8 C 1.34776 * 136.05806 * 207.08628 * 7 6 5 9 9 O 1.21282 * 119.99940 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.53006 * 109.47184 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47309 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47510 * 119.99847 * 16 14 12 19 19 H 1.48506 * 109.47246 * 239.99882 * 16 14 12 20 20 C 1.47064 * 87.88775 * 27.33992 * 7 6 5 21 21 H 1.09011 * 109.46724 * 60.00087 * 1 2 3 22 22 H 1.09001 * 109.47668 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47326 * 300.00314 * 1 2 3 24 24 H 0.97005 * 119.99383 * 179.97438 * 2 1 3 25 25 H 1.09008 * 113.27928 * 313.06818 * 5 3 2 26 26 H 1.09000 * 113.47214 * 105.36253 * 6 5 3 27 27 H 1.09008 * 113.51999 * 334.93344 * 6 5 3 28 28 H 1.09001 * 109.47612 * 59.99945 * 10 8 7 29 29 H 1.09001 * 109.47122 * 299.99777 * 10 8 7 30 30 H 1.09001 * 109.47002 * 299.99404 * 11 10 8 31 31 H 1.08993 * 109.46955 * 59.99842 * 11 10 8 32 32 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 33 33 H 1.09006 * 113.46975 * 87.43340 * 20 7 6 34 34 H 1.08996 * 113.47171 * 217.88169 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 6 4.2753 2.5670 0.0001 7 7 5.2784 2.0598 -0.9482 8 6 6.5525 2.3621 -1.2671 9 8 7.1235 3.2649 -0.6928 10 6 7.2673 1.5791 -2.3381 11 6 8.6886 2.1209 -2.5033 12 6 9.4032 1.3383 -3.5748 13 1 8.8945 0.5346 -4.0864 14 6 10.7065 1.6477 -3.9011 15 7 11.3261 2.6260 -3.2777 16 14 11.5925 0.6771 -5.2287 17 1 10.6825 -0.3632 -5.7720 18 1 12.0043 1.5947 -6.3213 19 1 12.7952 0.0278 -4.6480 20 6 4.2773 1.0818 -1.3999 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.9499 -0.8401 0.0004 25 1 4.0769 0.4832 0.7306 26 1 4.6953 2.8537 0.9642 27 1 3.6278 3.3353 -0.4226 28 1 6.7293 1.6782 -3.2809 29 1 7.3096 0.5280 -2.0527 30 1 8.6459 3.1719 -2.7891 31 1 9.2269 2.0222 -1.5607 32 1 12.2431 2.8434 -3.5070 33 1 3.6296 1.4577 -2.1920 34 1 4.6990 0.1030 -1.6285 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293113621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:52 Heat of formation + Delta-G solvation = -71.704270 kcal Electronic energy + Delta-G solvation = -16590.762524 eV Core-core repulsion = 13716.598841 eV Total energy + Delta-G solvation = -2874.163683 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.89553 -40.26014 -38.60028 -35.60011 -35.57337 -33.13711 -31.34872 -28.46375 -27.28791 -26.90079 -24.52013 -22.86059 -21.21986 -19.94040 -18.93901 -18.56001 -17.67667 -17.04944 -16.65172 -16.47129 -16.41004 -16.05970 -15.50697 -14.47828 -14.30980 -14.20125 -13.99194 -13.80954 -13.51662 -13.29159 -13.13285 -13.00957 -12.83790 -12.43203 -11.95733 -11.83918 -11.64329 -11.30060 -11.13686 -10.69835 -10.57961 -10.12018 -9.80026 -8.17730 -6.32235 1.43263 1.45086 1.48591 1.57987 1.59387 1.72607 2.35461 2.43958 3.11227 3.15477 3.56345 3.86167 4.02429 4.11778 4.37953 4.46556 4.48964 4.53385 4.55275 4.60051 4.68456 4.80816 5.00605 5.02258 5.10093 5.44988 5.49673 5.60938 5.84468 6.16438 6.53447 6.63356 6.86826 7.16550 7.23685 7.38322 8.95405 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.049404 B = 0.003985 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.621162 B = 7025.378777 C = 7482.100428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.715 5.715 3 C 0.529 3.471 4 O -0.581 6.581 5 C -0.130 4.130 6 C 0.110 3.890 7 N -0.657 5.657 8 C 0.538 3.462 9 O -0.591 6.591 10 C -0.107 4.107 11 C 0.040 3.960 12 C -0.541 4.541 13 H 0.079 0.921 14 C -0.009 4.009 15 N -0.939 5.939 16 Si 0.977 3.023 17 H -0.250 1.250 18 H -0.282 1.282 19 H -0.280 1.280 20 C 0.123 3.877 21 H 0.050 0.950 22 H 0.112 0.888 23 H 0.049 0.951 24 H 0.423 0.577 25 H 0.158 0.842 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.110 0.890 30 H -0.021 1.021 31 H -0.016 1.016 32 H 0.263 0.737 33 H 0.096 0.904 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.431 -12.694 4.864 26.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.367 5.367 3 C 0.315 3.685 4 O -0.461 6.461 5 C -0.152 4.152 6 C -0.013 4.013 7 N -0.393 5.393 8 C 0.331 3.669 9 O -0.471 6.471 10 C -0.147 4.147 11 C 0.003 3.997 12 C -0.578 4.578 13 H 0.097 0.903 14 C -0.206 4.206 15 N -0.579 5.579 16 Si 0.800 3.200 17 H -0.173 1.173 18 H -0.208 1.208 19 H -0.206 1.206 20 C 0.001 3.999 21 H 0.068 0.932 22 H 0.130 0.870 23 H 0.068 0.932 24 H 0.260 0.740 25 H 0.175 0.825 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.120 0.880 29 H 0.128 0.872 30 H -0.003 1.003 31 H 0.002 0.998 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.211 -11.361 5.114 25.467 hybrid contribution 0.994 0.107 -0.315 1.048 sum -21.217 -11.254 4.799 24.492 Atomic orbital electron populations 1.21700 0.78742 1.04342 1.01441 1.45714 1.08388 1.08593 1.74009 1.20278 0.89250 0.83858 0.75148 1.90726 1.70868 1.33223 1.51245 1.23117 0.91359 0.99395 1.01310 1.22880 0.87417 0.96762 0.94275 1.49730 1.09873 1.38498 1.41160 1.21091 0.79770 0.82947 0.83124 1.90666 1.67038 1.33927 1.55498 1.21569 0.96283 1.00440 0.96366 1.18725 0.91035 0.94670 0.95312 1.21725 0.98265 1.17636 1.20215 0.90289 1.26179 0.98828 0.96308 0.99321 1.70191 1.12633 1.31374 1.43737 0.85232 0.78309 0.78499 0.77934 1.17315 1.20812 1.20609 1.23136 0.87011 0.94960 0.94769 0.93167 0.86996 0.93233 0.74005 0.82451 0.90785 0.89702 0.88021 0.87203 1.00252 0.99805 0.92858 0.88601 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.70 127.77 1.37 2.03 16 2 N -0.72 -6.49 5.71 -484.52 -2.77 -9.26 16 3 C 0.53 8.94 7.40 87.66 0.65 9.59 16 4 O -0.58 -15.53 15.95 -3.03 -0.05 -15.58 16 5 C -0.13 -2.00 4.50 -11.12 -0.05 -2.05 16 6 C 0.11 2.79 7.96 83.18 0.66 3.45 16 7 N -0.66 -19.25 3.69 -857.80 -3.16 -22.41 16 8 C 0.54 22.14 8.08 87.66 0.71 22.85 16 9 O -0.59 -31.10 16.76 -3.04 -0.05 -31.15 16 10 C -0.11 -4.36 5.47 29.85 0.16 -4.20 16 11 C 0.04 2.27 4.26 29.85 0.13 2.40 16 12 C -0.54 -30.72 9.11 25.60 0.23 -30.48 16 13 H 0.08 4.04 7.74 -2.91 -0.02 4.02 16 14 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 15 N -0.94 -60.03 13.29 21.45 0.28 -59.74 16 16 Si 0.98 44.08 29.54 68.60 2.03 46.10 16 17 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 C 0.12 2.07 8.00 83.27 0.67 2.74 16 21 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 22 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 23 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.42 0.84 8.83 -92.70 -0.82 0.02 16 25 H 0.16 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.08 2.34 7.46 -2.38 -0.02 2.32 16 28 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 29 H 0.11 3.78 8.14 -2.39 -0.02 3.77 16 30 H -0.02 -1.35 8.10 -2.39 -0.02 -1.37 16 31 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 32 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 33 H 0.10 1.52 8.10 -2.38 -0.02 1.50 16 34 H 0.12 1.33 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -86.76 298.97 1.55 -85.21 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: 0.28 Total: 0.56 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 4.99 Total: 6.27 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -5.65 Total: -91.41 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -0.10 Total: -46.73 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -86.76 1.55 -85.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293113621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.506 kcal (2) G-P(sol) polarization free energy of solvation -86.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds