Wall clock time and date at job start Sun Mar 29 2020 22:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29037 * 1 3 3 O 1.34919 * 119.99824 * 2 1 4 4 C 1.50701 * 120.00062 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47212 * 0.02562 * 4 2 1 6 6 C 1.52992 * 109.47482 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.50545 * 304.92206 * 6 5 4 8 8 C 1.53126 * 109.50239 * 64.99931 * 6 5 4 9 9 C 1.53120 * 109.15922 * 177.59758 * 8 6 5 10 10 C 1.53037 * 109.27885 * 302.34603 * 9 8 6 11 11 N 1.46840 * 109.52462 * 59.18283 * 10 9 8 12 12 C 1.46898 * 111.00172 * 174.16291 * 11 10 9 13 13 C 1.50696 * 109.46990 * 293.95271 * 12 11 10 14 14 H 1.08008 * 119.99919 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00541 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99552 * 359.97438 * 15 13 12 17 17 Si 1.86789 * 120.00588 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47407 * 59.99664 * 17 15 13 19 19 H 1.48496 * 109.47431 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47034 * 299.99864 * 17 15 13 21 21 C 1.46848 * 111.19831 * 298.25664 * 11 10 9 22 22 H 0.96998 * 120.00318 * 0.02562 * 1 2 3 23 23 H 0.96703 * 114.00255 * 359.97438 * 3 2 1 24 24 H 1.09002 * 109.47060 * 120.00396 * 4 2 1 25 25 H 1.09001 * 109.47380 * 240.00483 * 4 2 1 26 26 H 1.09002 * 109.47153 * 299.99998 * 5 4 2 27 27 H 1.08998 * 109.47533 * 59.99628 * 5 4 2 28 28 H 1.08995 * 109.52196 * 297.50018 * 8 6 5 29 29 H 1.08998 * 109.51957 * 57.69274 * 8 6 5 30 30 H 1.09001 * 109.50597 * 62.28634 * 9 8 6 31 31 H 1.09004 * 109.50003 * 182.36521 * 9 8 6 32 32 H 1.09005 * 109.46301 * 179.20430 * 10 9 8 33 33 H 1.09009 * 109.46356 * 299.16399 * 10 9 8 34 34 H 1.09000 * 109.47532 * 53.95052 * 12 11 10 35 35 H 1.08998 * 109.47381 * 173.95233 * 12 11 10 36 36 H 0.97000 * 120.00340 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.46223 * 301.72842 * 21 11 10 38 38 H 1.08994 * 109.46602 * 181.75771 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2904 0.0000 0.0000 3 8 1.9649 1.1685 0.0000 4 6 2.0439 -1.3051 0.0006 5 6 1.0497 -2.4680 0.0005 6 6 1.8146 -3.7930 0.0004 7 1 2.5060 -3.8141 -0.8420 8 6 2.5984 -3.9308 1.3086 9 6 3.3126 -5.2852 1.3262 10 6 2.2797 -6.4031 1.1669 11 7 1.5574 -6.2271 -0.0994 12 6 0.6545 -7.3579 -0.3521 13 6 1.4656 -8.6086 -0.5730 14 1 2.5441 -8.5674 -0.5304 15 6 0.8312 -9.8054 -0.8306 16 7 -0.4820 -9.8554 -0.8830 17 14 1.8366 -11.3555 -1.1051 18 1 2.6542 -11.6356 0.1025 19 1 0.9240 -12.4987 -1.3605 20 1 2.7310 -11.1646 -2.2751 21 6 0.8252 -4.9543 -0.1205 22 1 -0.4850 0.8400 -0.0004 23 1 1.3965 1.9508 -0.0004 24 1 2.6706 -1.3632 -0.8894 25 1 2.6705 -1.3625 0.8906 26 1 0.4227 -2.4101 0.8902 27 1 0.4233 -2.4105 -0.8897 28 1 3.3345 -3.1300 1.3783 29 1 1.9117 -3.8701 2.1528 30 1 4.0275 -5.3304 0.5046 31 1 3.8384 -5.4070 2.2733 32 1 2.7865 -7.3682 1.1648 33 1 1.5733 -6.3659 1.9962 34 1 -0.0020 -7.4977 0.5066 35 1 0.0545 -7.1527 -1.2386 36 1 -0.9285 -10.6974 -1.0639 37 1 0.1257 -4.9238 0.7148 38 1 0.2756 -4.8670 -1.0577 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330465077.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:33 Heat of formation + Delta-G solvation = -71.622585 kcal Electronic energy + Delta-G solvation = -17261.514491 eV Core-core repulsion = 14523.187444 eV Total energy + Delta-G solvation = -2738.327046 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.32152 -39.71919 -36.45346 -34.92128 -33.77126 -32.75148 -30.55364 -28.80317 -26.08010 -25.16855 -23.35999 -22.31294 -20.94927 -20.48859 -19.10569 -18.42901 -16.98852 -16.48147 -16.32497 -16.02895 -15.73651 -15.17751 -14.95836 -14.85845 -14.29230 -13.99259 -13.81198 -13.45526 -13.21831 -12.82635 -12.76704 -12.58012 -12.35775 -12.17779 -11.88742 -11.75055 -11.53010 -11.40905 -10.98095 -10.84624 -10.70411 -10.60466 -10.59763 -8.96667 -8.19464 -6.30328 1.41433 1.42713 1.45460 1.53343 2.41147 2.59646 3.12355 3.36004 3.69433 3.92654 4.06849 4.10470 4.31066 4.41845 4.50378 4.59860 4.73345 4.77856 4.78797 4.92447 4.97681 5.01861 5.09477 5.18757 5.20125 5.28148 5.31201 5.38082 5.42753 5.57206 5.64506 5.70776 5.99881 6.07506 6.40647 6.70569 6.86594 7.39551 7.48280 8.91764 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.049647 B = 0.004280 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.840713 B = 6539.978166 C = 6882.423831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.367 3.633 3 O -0.535 6.535 4 C -0.053 4.053 5 C -0.080 4.080 6 C -0.074 4.074 7 H 0.080 0.920 8 C -0.110 4.110 9 C -0.109 4.109 10 C 0.062 3.938 11 N -0.541 5.541 12 C 0.206 3.794 13 C -0.524 4.524 14 H 0.065 0.935 15 C -0.001 4.001 16 N -0.937 5.937 17 Si 0.973 3.027 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.267 1.267 21 C 0.060 3.940 22 H 0.343 0.657 23 H 0.412 0.588 24 H 0.108 0.892 25 H 0.113 0.887 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.006 0.994 34 H -0.044 1.044 35 H 0.000 1.000 36 H 0.264 0.736 37 H 0.010 0.990 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.351 19.743 3.800 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.138 3.862 3 O -0.332 6.332 4 C -0.090 4.090 5 C -0.119 4.119 6 C -0.093 4.093 7 H 0.099 0.901 8 C -0.147 4.147 9 C -0.147 4.147 10 C -0.067 4.067 11 N -0.266 5.266 12 C 0.080 3.920 13 C -0.562 4.562 14 H 0.083 0.917 15 C -0.199 4.199 16 N -0.578 5.578 17 Si 0.797 3.203 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.191 1.191 21 C -0.069 4.069 22 H 0.162 0.838 23 H 0.269 0.731 24 H 0.126 0.874 25 H 0.131 0.869 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.024 0.976 34 H -0.027 1.027 35 H 0.018 0.982 36 H 0.073 0.927 37 H 0.028 0.972 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.537 18.634 3.398 20.386 hybrid contribution -1.280 0.321 0.374 1.372 sum 6.256 18.955 3.772 20.314 Atomic orbital electron populations 1.69717 1.07206 1.37439 1.27496 1.24846 0.87539 0.87872 0.85983 1.84818 1.43205 1.16439 1.88729 1.20491 0.97252 0.85254 1.06042 1.21154 0.96864 0.91178 1.02675 1.21156 0.96562 0.92288 0.99309 0.90117 1.21687 0.99309 0.97285 0.96441 1.21588 0.97018 0.93715 1.02331 1.22004 0.96066 0.99812 0.88781 1.61964 1.29132 1.01933 1.33522 1.19363 0.90717 0.89006 0.92932 1.21449 0.93725 0.93095 1.47901 0.91713 1.25981 0.96069 1.02837 0.95011 1.70099 1.09512 1.27576 1.50593 0.85387 0.78198 0.77575 0.79166 1.19091 1.20857 1.19142 1.22119 0.95382 0.90319 0.99033 0.83829 0.73130 0.87367 0.86897 0.92179 0.92325 0.88631 0.92696 0.91305 0.90056 0.92409 0.97589 1.02673 0.98181 0.92689 0.97186 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -15.55 12.73 -166.06 -2.11 -17.67 16 2 C 0.37 6.42 8.25 88.52 0.73 7.15 16 3 O -0.54 -7.21 13.58 -81.88 -1.11 -8.32 16 4 C -0.05 -0.88 5.57 29.85 0.17 -0.72 16 5 C -0.08 -1.85 3.91 30.59 0.12 -1.73 16 6 C -0.07 -2.01 2.35 -10.74 -0.03 -2.03 16 7 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 8 C -0.11 -2.60 4.98 30.68 0.15 -2.45 16 9 C -0.11 -3.09 6.09 30.65 0.19 -2.90 16 10 C 0.06 2.46 5.30 86.33 0.46 2.92 16 11 N -0.54 -24.52 4.65 -900.94 -4.19 -28.70 16 12 C 0.21 11.64 4.72 85.56 0.40 12.04 16 13 C -0.52 -30.71 8.43 25.60 0.22 -30.49 16 14 H 0.06 3.69 7.14 -2.91 -0.02 3.67 16 15 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 16 N -0.94 -58.19 13.29 21.45 0.28 -57.91 16 17 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 C 0.06 2.27 4.74 86.33 0.41 2.68 16 22 H 0.34 5.31 8.56 -92.71 -0.79 4.52 16 23 H 0.41 2.01 8.70 -74.06 -0.64 1.37 16 24 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.11 1.53 6.63 -2.39 -0.02 1.51 16 26 H 0.06 1.51 8.06 -2.39 -0.02 1.49 16 27 H 0.06 1.51 8.06 -2.39 -0.02 1.49 16 28 H 0.10 1.61 6.70 -2.39 -0.02 1.59 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.06 2.54 6.72 -2.38 -0.02 2.52 16 33 H 0.01 0.24 8.14 -2.38 -0.02 0.22 16 34 H -0.04 -2.73 8.12 -2.39 -0.02 -2.75 16 35 H 0.00 0.00 7.98 -2.39 -0.02 -0.01 16 36 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.05 2.13 8.01 -2.39 -0.02 2.12 16 Total: -1.00 -71.16 304.88 -2.21 -73.37 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -0.39 Total: 7.23 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 3.28 Total: -15.15 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -6.02 Total: -104.28 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -1.11 Total: -8.32 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -71.16 -2.21 -73.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330465077.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.752 kcal (2) G-P(sol) polarization free energy of solvation -71.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds