Wall clock time and date at job start Sun Mar 29 2020 22:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47078 * 2 1 4 4 C 1.34772 * 119.99864 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00199 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00042 * 180.02562 * 4 3 2 7 7 C 1.50692 * 109.47308 * 179.97438 * 6 4 3 8 8 O 1.21294 * 120.00231 * 0.02562 * 7 6 4 9 9 N 1.34781 * 120.00480 * 179.97438 * 7 6 4 10 10 C 1.37091 * 120.00576 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00222 * 223.56930 * 10 9 7 12 12 C 1.38951 * 120.00010 * 43.56664 * 10 9 7 13 13 N 1.31413 * 119.99959 * 22.93833 * 12 10 9 14 14 Si 1.86798 * 120.00130 * 202.94143 * 12 10 9 15 15 H 1.48501 * 109.47060 * 180.02562 * 14 12 10 16 16 H 1.48506 * 109.46941 * 299.99758 * 14 12 10 17 17 H 1.48497 * 109.47304 * 59.99973 * 14 12 10 18 18 C 1.46508 * 119.99290 * 0.02562 * 9 7 6 19 19 C 1.53002 * 117.49453 * 186.86634 * 18 9 7 20 20 C 1.53004 * 60.00148 * 252.51359 * 19 18 9 21 21 H 1.08989 * 109.47196 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47000 * 300.00188 * 1 2 3 23 23 H 1.08997 * 109.46864 * 59.99334 * 1 2 3 24 24 H 1.08999 * 109.47169 * 240.00761 * 2 1 3 25 25 H 1.08994 * 109.47129 * 119.99956 * 2 1 3 26 26 H 0.96997 * 119.99850 * 0.02562 * 3 2 1 27 27 H 1.09005 * 109.46877 * 59.99824 * 6 4 3 28 28 H 1.08998 * 109.47043 * 300.00287 * 6 4 3 29 29 H 0.97001 * 119.99927 * 6.10503 * 13 12 10 30 30 H 1.08999 * 115.55190 * 332.57597 * 18 9 7 31 31 H 1.08996 * 117.49764 * 0.02562 * 19 18 9 32 32 H 1.08999 * 117.49659 * 145.02224 * 19 18 9 33 33 H 1.08998 * 117.50051 * 252.51877 * 20 19 18 34 34 H 1.09000 * 117.51908 * 107.48332 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8458 3.0483 0.0011 7 6 5.3527 3.0484 0.0023 8 8 5.9592 1.9979 0.0021 9 7 6.0267 4.2155 0.0024 10 6 7.3976 4.2156 0.0029 11 1 7.9374 4.8933 0.6477 12 6 8.0927 3.3436 -0.8261 13 7 7.5140 2.8572 -1.9010 14 14 9.8497 2.8627 -0.4126 15 1 10.3639 1.9294 -1.4469 16 1 10.7007 4.0793 -0.3775 17 1 9.8817 2.1978 0.9148 18 6 5.2941 5.4843 0.0020 19 6 6.1079 6.7698 -0.1600 20 6 5.4967 6.4173 1.1976 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8934 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.3880 2.1185 0.0004 27 1 3.4821 3.5619 0.8912 28 1 3.4827 3.5624 -0.8888 29 1 6.6357 3.1738 -2.1643 30 1 4.3033 5.4549 -0.4513 31 1 7.1881 6.6715 -0.2668 32 1 5.6525 7.5864 -0.7202 33 1 4.6392 7.0020 1.5306 34 1 6.1747 6.0870 1.9846 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331761599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:32 Heat of formation + Delta-G solvation = -34.108135 kcal Electronic energy + Delta-G solvation = -17618.804155 eV Core-core repulsion = 14746.270763 eV Total energy + Delta-G solvation = -2872.533392 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.52215 -38.24270 -36.09028 -34.83551 -32.86142 -31.39683 -30.53497 -28.83238 -24.56570 -22.87814 -21.77714 -21.32394 -20.55189 -19.19148 -16.78779 -16.56813 -16.13427 -15.52997 -15.32311 -14.61255 -14.32821 -13.83675 -13.60476 -13.20438 -12.98744 -12.80115 -12.39194 -12.01285 -11.84507 -11.49826 -11.36846 -11.01800 -10.78438 -10.66811 -10.18922 -10.01949 -9.87116 -9.63891 -9.25975 -8.76172 -8.53011 -7.85846 -7.23696 -6.28171 -3.80636 3.20582 3.41498 3.48669 3.60479 3.74047 4.01670 4.41791 4.68652 4.84060 4.94402 5.04349 5.22306 5.27301 5.37270 5.48137 5.55627 5.69883 5.74337 5.75611 5.81987 5.90695 6.00149 6.07794 6.15987 6.37857 6.67588 6.72364 6.89647 7.80682 7.96867 8.47743 8.77305 8.90739 9.28715 9.64138 10.20558 10.99548 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.024410 B = 0.007657 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.785196 B = 3656.086470 C = 4575.542016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.746 5.746 4 C 0.509 3.491 5 O -0.483 6.483 6 C -0.157 4.157 7 C 0.461 3.539 8 O -0.491 6.491 9 N -0.436 5.436 10 C -0.429 4.429 11 H 0.069 0.931 12 C 0.040 3.960 13 N -0.843 5.843 14 Si 1.075 2.925 15 H -0.282 1.282 16 H -0.290 1.290 17 H -0.286 1.286 18 C 0.067 3.933 19 C -0.173 4.173 20 C -0.204 4.204 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.394 0.606 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.269 0.731 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.453 3.559 3.137 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.008 4.008 3 N -0.403 5.403 4 C 0.293 3.707 5 O -0.353 6.353 6 C -0.201 4.201 7 C 0.246 3.754 8 O -0.365 6.365 9 N -0.160 5.160 10 C -0.555 4.555 11 H 0.087 0.913 12 C -0.174 4.174 13 N -0.474 5.474 14 Si 0.902 3.098 15 H -0.207 1.207 16 H -0.217 1.217 17 H -0.212 1.212 18 C -0.039 4.039 19 C -0.211 4.211 20 C -0.243 4.243 21 H 0.089 0.911 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.227 0.773 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.258 1.263 2.636 11.631 hybrid contribution -1.920 1.662 0.489 2.587 sum -13.179 2.926 3.125 13.856 Atomic orbital electron populations 1.21984 0.94888 1.02837 1.02242 1.21184 0.93621 0.83791 1.02217 1.46128 1.07234 1.08158 1.78745 1.20345 0.81699 0.91645 0.76976 1.90859 1.54208 1.45580 1.44612 1.21624 0.99098 0.95109 1.04282 1.19569 0.87004 0.85153 0.83654 1.90766 1.68213 1.29556 1.47952 1.42974 1.05412 1.00775 1.66815 1.19680 0.79663 1.28848 1.27358 0.91349 1.26152 1.05453 0.94014 0.91731 1.70568 1.16581 1.39888 1.20317 0.83442 0.73721 0.76179 0.76419 1.20732 1.21669 1.21189 1.21769 0.96275 0.84913 1.00921 1.23070 1.01678 0.97488 0.98870 1.23270 1.03163 1.04996 0.92901 0.91127 0.92167 0.92145 0.91848 0.91897 0.77285 0.87939 0.88215 0.92055 0.88071 0.87370 0.89845 0.89823 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 10.03 37.16 0.37 -0.96 16 2 C 0.12 1.46 6.39 -4.04 -0.03 1.43 16 3 N -0.75 -10.35 5.56 -60.29 -0.33 -10.69 16 4 C 0.51 10.02 7.82 -10.99 -0.09 9.94 16 5 O -0.48 -12.44 14.18 -18.96 -0.27 -12.71 16 6 C -0.16 -2.95 4.76 -29.04 -0.14 -3.08 16 7 C 0.46 11.98 6.43 -10.99 -0.07 11.91 16 8 O -0.49 -15.48 12.05 -18.97 -0.23 -15.71 16 9 N -0.44 -11.01 2.60 -107.72 -0.28 -11.29 16 10 C -0.43 -12.09 7.77 -14.94 -0.12 -12.21 16 11 H 0.07 1.89 7.42 -52.49 -0.39 1.50 16 12 C 0.04 1.17 4.22 -17.47 -0.07 1.10 16 13 N -0.84 -26.64 12.36 55.50 0.69 -25.95 16 14 Si 1.08 26.72 29.98 -169.99 -5.10 21.63 16 15 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 C 0.07 1.31 5.96 -67.92 -0.40 0.91 16 19 C -0.17 -3.11 9.80 -26.73 -0.26 -3.37 16 20 C -0.20 -3.46 10.30 -26.73 -0.28 -3.73 16 21 H 0.07 0.50 8.14 -51.94 -0.42 0.08 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.39 3.96 8.47 -40.82 -0.35 3.62 16 27 H 0.10 1.58 8.11 -51.93 -0.42 1.15 16 28 H 0.10 1.58 7.57 -51.93 -0.39 1.19 16 29 H 0.27 8.55 7.42 -40.82 -0.30 8.24 16 30 H 0.10 1.66 6.84 -51.93 -0.36 1.30 16 31 H 0.11 2.21 6.82 -51.93 -0.35 1.86 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 289.30 15.07 4.36 4.36 Total: -1.00 -38.25 289.30 -6.98 -45.23 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.74 Total: 3.19 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.08 Total: 1.93 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.07 Total: -47.93 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.50 Total: -28.41 kcal Atomic # 14 Polarization: 26.72 SS G_CDS: -5.10 Total: 21.63 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -38.25 -6.98 -45.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331761599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.126 kcal (2) G-P(sol) polarization free energy of solvation -38.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds