Wall clock time and date at job start Sun Mar 29 2020 22:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00128 * 2 1 4 4 H 1.48494 * 109.47085 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46916 * 299.99487 * 3 2 1 6 6 H 1.48499 * 109.46996 * 59.99694 * 3 2 1 7 7 C 1.37882 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47196 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47206 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47282 * 179.97438 * 11 10 9 13 13 C 1.34769 * 120.00336 * 179.97438 * 12 11 10 14 14 O 1.21589 * 119.99898 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00454 * 180.02562 * 13 12 11 16 16 C 1.46504 * 120.00207 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.46983 * 179.97438 * 16 15 13 18 18 C 1.53786 * 113.61503 * 85.86203 * 17 16 15 19 19 C 1.54049 * 86.98426 * 140.01654 * 18 17 16 20 20 C 1.53781 * 113.61337 * 183.46996 * 17 16 15 21 21 H 0.96995 * 119.99545 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47335 * 59.98998 * 9 7 2 23 23 H 1.08999 * 109.46988 * 299.99355 * 9 7 2 24 24 H 1.08996 * 109.47228 * 60.00325 * 10 9 7 25 25 H 1.08999 * 109.47250 * 299.99960 * 10 9 7 26 26 H 1.09005 * 109.46698 * 60.00359 * 11 10 9 27 27 H 1.08999 * 109.47274 * 300.00301 * 11 10 9 28 28 H 0.97005 * 119.99996 * 0.02562 * 12 11 10 29 29 H 0.96999 * 120.00146 * 359.97438 * 15 13 12 30 30 H 1.09000 * 109.47232 * 59.99775 * 16 15 13 31 31 H 1.08997 * 109.47041 * 299.99591 * 16 15 13 32 32 H 1.09002 * 112.85017 * 314.66585 * 17 16 15 33 33 H 1.08992 * 113.61675 * 254.61398 * 18 17 16 34 34 H 1.09000 * 113.60973 * 25.51686 * 18 17 16 35 35 H 1.09005 * 113.62125 * 220.02158 * 19 18 17 36 36 H 1.09003 * 113.61268 * 89.11946 * 19 18 17 37 37 H 1.08999 * 113.61567 * 334.48261 * 20 17 16 38 38 H 1.09000 * 113.61379 * 105.30384 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0006 13 6 1.9830 -7.3713 0.0015 14 8 0.7876 -7.5935 0.0024 15 7 2.8587 -8.3957 0.0014 16 6 2.3704 -9.7770 0.0019 17 6 3.5604 -10.7386 0.0011 18 6 4.1045 -11.0467 1.4061 19 6 4.2745 -12.5026 0.9324 20 6 3.1555 -12.2197 -0.0838 21 1 -0.4849 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8903 24 1 2.8719 -3.6044 0.8905 25 1 2.8719 -3.6044 -0.8894 26 1 0.8533 -5.0451 -0.8887 27 1 0.8538 -5.0446 0.8913 28 1 3.3859 -5.9234 0.0002 29 1 3.8124 -8.2185 0.0004 30 1 1.7645 -9.9484 -0.8878 31 1 1.7652 -9.9480 0.8921 32 1 4.3329 -10.4555 -0.7139 33 1 5.0465 -10.5457 1.6291 34 1 3.3636 -10.9285 2.1968 35 1 4.0031 -13.2417 1.6863 36 1 5.2422 -12.7018 0.4721 37 1 2.1556 -12.4217 0.3003 38 1 3.3305 -12.6648 -1.0633 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332065118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:12 Heat of formation + Delta-G solvation = -37.583396 kcal Electronic energy + Delta-G solvation = -16383.192995 eV Core-core repulsion = 13646.341999 eV Total energy + Delta-G solvation = -2736.850996 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.97572 -38.91542 -35.48279 -34.27542 -33.24414 -31.15794 -28.49140 -26.38458 -25.94388 -23.43818 -22.52223 -20.84142 -20.41970 -19.69672 -17.96788 -16.65954 -16.19045 -15.74997 -15.42356 -14.89804 -14.48278 -14.36361 -14.05738 -13.75974 -13.40369 -12.79747 -12.28090 -12.26804 -12.02453 -11.77821 -11.61215 -10.94634 -10.90923 -10.74804 -10.69078 -10.59310 -10.55055 -10.04172 -9.83737 -9.41924 -9.13401 -9.09290 -8.54204 -8.36032 -6.00513 -4.03432 2.87800 3.30778 3.38186 3.41764 3.43188 4.20332 4.26637 4.34560 4.44728 4.48665 4.59238 4.96653 5.16114 5.35290 5.36473 5.40451 5.50053 5.55681 5.63567 5.68833 5.78259 5.84907 5.89275 6.12042 6.21942 6.51958 6.57327 6.65578 6.84969 7.05415 7.12991 7.66049 7.78936 7.98828 8.21040 8.39794 8.81316 9.03603 9.60644 11.10874 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.071517 B = 0.002996 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.420002 B = 9344.216415 C = 9609.726149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.742 5.742 13 C 0.698 3.302 14 O -0.595 6.595 15 N -0.751 5.751 16 C 0.149 3.851 17 C -0.125 4.125 18 C -0.137 4.137 19 C -0.143 4.143 20 C -0.131 4.131 21 H 0.260 0.740 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.393 0.607 29 H 0.394 0.606 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.139 -22.645 0.690 24.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.397 5.397 13 C 0.398 3.602 14 O -0.473 6.473 15 N -0.407 5.407 16 C 0.025 3.975 17 C -0.144 4.144 18 C -0.175 4.175 19 C -0.181 4.181 20 C -0.169 4.169 21 H 0.070 0.930 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.226 0.774 29 H 0.227 0.773 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.837 -22.718 0.692 24.386 hybrid contribution 1.336 1.165 -0.021 1.773 sum 10.173 -21.553 0.671 23.843 Atomic orbital electron populations 1.69980 1.06054 1.26554 1.50697 1.25041 0.94861 0.99313 0.95329 0.86525 0.80028 0.83777 0.77588 1.19781 1.21008 1.21012 1.21246 0.93016 0.90945 1.50727 0.92612 1.19036 0.93880 0.90831 0.97705 1.21885 0.99767 0.93352 1.00792 1.21503 0.91320 0.84179 1.01848 1.45382 1.10389 1.04496 1.79401 1.16048 0.85331 0.80815 0.78007 1.90915 1.14213 1.84186 1.58011 1.45115 1.08839 1.05357 1.81404 1.21164 0.95359 0.78864 1.02144 1.22830 0.97976 0.95071 0.98488 1.23052 1.01485 0.96423 0.96494 1.22861 0.99046 0.97114 0.99060 1.22868 0.99380 0.94776 0.99901 0.92989 0.96236 0.96230 0.92797 0.92788 0.92003 0.91998 0.77373 0.77293 0.91760 0.91684 0.88683 0.91416 0.89806 0.91374 0.90217 0.89688 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.13 2.47 5.67 -4.04 -0.02 2.45 16 12 N -0.74 -11.14 5.56 -65.23 -0.36 -11.50 16 13 C 0.70 11.11 8.57 -86.93 -0.74 10.36 16 14 O -0.59 -12.16 16.34 5.29 0.09 -12.08 16 15 N -0.75 -8.43 5.56 -65.22 -0.36 -8.79 16 16 C 0.15 1.51 5.50 -4.04 -0.02 1.48 16 17 C -0.12 -0.87 3.75 -89.80 -0.34 -1.21 16 18 C -0.14 -0.90 7.65 -25.77 -0.20 -1.10 16 19 C -0.14 -0.83 8.09 -25.78 -0.21 -1.04 16 20 C -0.13 -0.82 7.64 -25.92 -0.20 -1.02 16 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.39 4.67 8.49 -40.82 -0.35 4.32 16 29 H 0.39 3.25 8.49 -40.82 -0.35 2.91 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.73 7.88 -51.93 -0.41 0.32 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.60 7.92 -51.93 -0.41 0.19 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 317.91 15.07 4.79 4.79 Total: -1.00 -33.22 317.91 -9.10 -42.32 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.55 Total: 0.58 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -2.42 Total: -5.60 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.01 Total: -46.58 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.22 -9.10 -42.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332065118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.734 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds