Wall clock time and date at job start Sun Mar 29 2020 22:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39898 * 110.62739 * 2 1 4 4 C 1.55134 * 110.85888 * 236.78843 * 2 1 3 5 5 C 1.54904 * 101.65782 * 205.89468 * 4 2 1 6 6 N 1.47848 * 104.79596 * 37.07043 * 5 4 2 7 7 C 1.46900 * 110.99973 * 213.64066 * 6 5 4 8 8 C 1.52994 * 109.47023 * 290.84046 * 7 6 5 9 9 H 1.09003 * 109.47481 * 55.00359 * 8 7 6 10 10 C 1.47197 * 109.47219 * 294.99996 * 8 7 6 11 11 N 6.01644 * 124.01138 * 157.13922 * 2 1 3 12 12 C 1.52998 * 109.47095 * 175.00276 * 8 7 6 13 13 C 1.50706 * 109.47348 * 184.99906 * 12 8 7 14 14 H 1.08005 * 119.99758 * 359.97438 * 13 12 8 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 12 8 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 C 1.47442 * 108.56232 * 335.90591 * 6 5 4 22 22 H 1.09000 * 109.47345 * 296.89192 * 1 2 3 23 23 H 1.08993 * 109.47213 * 56.90094 * 1 2 3 24 24 H 1.09001 * 109.46900 * 176.89580 * 1 2 3 25 25 H 1.09003 * 110.99198 * 323.98401 * 4 2 1 26 26 H 1.09002 * 110.99189 * 87.76379 * 4 2 1 27 27 H 1.08998 * 110.37306 * 278.24391 * 5 4 2 28 28 H 1.09002 * 110.37640 * 155.90113 * 5 4 2 29 29 H 1.09004 * 109.47027 * 170.84186 * 7 6 5 30 30 H 1.09002 * 109.47026 * 50.84401 * 7 6 5 31 31 H 1.09001 * 109.47671 * 65.00115 * 12 8 7 32 32 H 1.09006 * 109.47297 * 304.99834 * 12 8 7 33 33 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 34 34 H 1.08999 * 109.89114 * 120.40051 * 21 6 5 35 35 H 1.09004 * 109.89172 * 241.58311 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 2.0228 1.3093 0.0000 4 6 2.0823 -0.7940 -1.2129 5 6 3.4691 -1.2424 -0.6881 6 7 3.2515 -1.5456 0.7425 7 6 4.4411 -1.2137 1.5379 8 6 5.5706 -2.1877 1.1969 9 1 5.7493 -2.1749 0.1217 10 6 5.1895 -3.5467 1.6149 11 7 4.8953 -4.5955 1.9375 12 6 6.8455 -1.7672 1.9308 13 6 7.9876 -2.6516 1.5009 14 1 7.8206 -3.4355 0.7770 15 6 9.2455 -2.4600 2.0318 16 7 9.4487 -1.5057 2.9137 17 14 10.6608 -3.5567 1.4994 18 1 11.8986 -3.1477 2.2107 19 1 10.3436 -4.9694 1.8292 20 1 10.8657 -3.4243 0.0345 21 6 2.0756 -0.7884 1.2092 22 1 -0.3634 0.4648 0.9165 23 1 -0.3633 0.5612 -0.8608 24 1 -0.3633 -1.0262 -0.0557 25 1 1.4522 -1.6551 -1.4356 26 1 2.1843 -0.1508 -2.0870 27 1 4.1953 -0.4372 -0.7991 28 1 3.8055 -2.1336 -1.2180 29 1 4.2022 -1.2912 2.5986 30 1 4.7579 -0.1958 1.3103 31 1 6.6951 -1.8651 3.0059 32 1 7.0784 -0.7300 1.6895 33 1 8.7136 -0.9365 3.1904 34 1 1.3143 -1.4758 1.5778 35 1 2.3691 -0.0980 2.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347372729.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:34 Heat of formation + Delta-G solvation = -38.941169 kcal Electronic energy + Delta-G solvation = -17148.728696 eV Core-core repulsion = 14288.358517 eV Total energy + Delta-G solvation = -2860.370179 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.133 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.81284 -38.97618 -36.37678 -34.12909 -33.09003 -31.14350 -29.87809 -27.06050 -25.23992 -23.33972 -22.07200 -21.13956 -20.57173 -17.28609 -16.64830 -16.26022 -16.08545 -15.22634 -14.90269 -14.49773 -13.77337 -13.61824 -13.55499 -13.22357 -13.14925 -12.73426 -12.48018 -12.21792 -12.10905 -11.81152 -11.75202 -11.39862 -11.28509 -11.01520 -10.91616 -10.75341 -10.62326 -10.30886 -10.14189 -9.87243 -8.66719 -8.41250 -8.35256 -6.42951 -4.14074 3.43135 3.46000 3.63434 3.65419 3.75104 3.86647 4.02322 4.23653 4.39819 4.50480 4.53908 4.80866 5.02964 5.12972 5.20013 5.26747 5.35735 5.44236 5.53490 5.58367 5.65255 5.69995 5.75547 5.86809 5.93915 6.05907 6.23665 6.31870 6.87391 6.99604 7.09574 7.24385 8.03522 8.35282 8.52647 8.79428 9.57166 10.97814 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.039961 B = 0.005130 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.511403 B = 5456.897461 C = 5682.669110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.089 3.911 3 F -0.205 7.205 4 C -0.145 4.145 5 C 0.037 3.963 6 N -0.528 5.528 7 C 0.055 3.945 8 C 0.020 3.980 9 H 0.100 0.900 10 C 0.256 3.744 11 N -0.476 5.476 12 C 0.017 3.983 13 C -0.606 4.606 14 H 0.051 0.949 15 C 0.021 3.979 16 N -0.908 5.908 17 Si 1.066 2.934 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.286 1.286 21 C 0.025 3.975 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.017 0.983 32 H 0.028 0.972 33 H 0.269 0.731 34 H 0.093 0.907 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.206 5.357 -7.311 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.070 3.930 3 F -0.185 7.185 4 C -0.184 4.184 5 C -0.090 4.090 6 N -0.252 5.252 7 C -0.074 4.074 8 C -0.002 4.002 9 H 0.118 0.882 10 C -0.061 4.061 11 N -0.153 5.153 12 C -0.021 4.021 13 C -0.644 4.644 14 H 0.069 0.931 15 C -0.184 4.184 16 N -0.544 5.544 17 Si 0.894 3.106 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.213 1.213 21 C -0.104 4.104 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.096 2.986 -6.522 16.714 hybrid contribution -1.291 1.636 -0.429 2.128 sum -16.388 4.622 -6.951 18.391 Atomic orbital electron populations 1.22199 0.92674 1.03751 1.03380 1.22185 0.94741 0.78411 0.97636 1.92863 1.89438 1.38708 1.97512 1.23308 0.97571 1.00448 0.97045 1.23159 0.96206 1.00965 0.88696 1.63695 1.03959 1.54790 1.02779 1.22505 0.89100 0.97493 0.98270 1.19014 0.95775 0.83168 1.02243 0.88171 1.28763 0.90644 0.94405 0.92296 1.80981 1.11644 1.12505 1.10145 1.19296 0.89960 0.97487 0.95383 1.21956 0.95162 1.18684 1.28574 0.93100 1.25792 1.00114 0.98189 0.94274 1.70807 1.35816 1.18137 1.29649 0.83577 0.75725 0.75329 0.75975 1.20676 1.21426 1.21270 1.23466 0.94540 0.96248 0.96099 0.91323 0.91349 0.90296 0.88939 0.89652 0.92364 0.89374 0.90217 0.92524 0.96489 0.95414 0.92068 0.88862 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 8.93 37.16 0.33 -0.91 16 2 C 0.09 0.92 1.60 -88.80 -0.14 0.78 16 3 F -0.20 -2.60 16.96 2.25 0.04 -2.56 16 4 C -0.15 -1.41 6.33 -24.60 -0.16 -1.57 16 5 C 0.04 0.45 5.72 -2.30 -0.01 0.44 16 6 N -0.53 -7.25 4.86 -231.25 -1.12 -8.38 16 7 C 0.06 0.85 3.93 -3.83 -0.02 0.84 16 8 C 0.02 0.38 2.21 -93.41 -0.21 0.17 16 9 H 0.10 1.81 7.34 -51.93 -0.38 1.43 16 10 C 0.26 5.47 13.67 -20.76 -0.28 5.19 16 11 N -0.48 -10.97 18.54 42.15 0.78 -10.19 16 12 C 0.02 0.40 3.74 -27.88 -0.10 0.30 16 13 C -0.61 -16.45 8.60 -34.44 -0.30 -16.75 16 14 H 0.05 1.39 7.59 -52.48 -0.40 0.99 16 15 C 0.02 0.59 5.46 -17.82 -0.10 0.49 16 16 N -0.91 -26.90 13.65 55.43 0.76 -26.14 16 17 Si 1.07 25.10 29.90 -169.99 -5.08 20.02 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.02 0.28 6.27 -2.84 -0.02 0.27 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.52 8.11 -51.93 -0.42 0.09 16 25 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.73 7.62 -51.93 -0.40 0.33 16 28 H 0.09 1.07 8.12 -51.93 -0.42 0.64 16 29 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 30 H 0.06 0.84 7.85 -51.93 -0.41 0.43 16 31 H 0.02 0.42 8.01 -51.93 -0.42 0.00 16 32 H 0.03 0.65 8.01 -51.93 -0.42 0.23 16 33 H 0.27 7.81 7.22 -40.82 -0.29 7.52 16 34 H 0.09 0.97 7.82 -51.93 -0.41 0.57 16 35 H 0.07 0.81 7.52 -51.93 -0.39 0.42 16 LS Contribution 297.38 15.07 4.48 4.48 Total: -1.00 -31.27 297.38 -6.40 -37.66 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -5.25 Total: -4.15 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -1.00 Total: -10.75 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.41 Total: -44.71 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.27 -6.40 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347372729.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.278 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds