Wall clock time and date at job start Sun Mar 29 2020 22:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39901 * 110.64653 * 2 1 4 4 C 1.54598 * 110.72550 * 123.16027 * 2 1 3 5 5 C 1.53991 * 105.14114 * 140.31265 * 4 2 1 6 6 N 1.47900 * 107.06005 * 1.22197 * 5 4 2 7 7 C 1.46901 * 111.00026 * 214.16151 * 6 5 4 8 8 C 1.53006 * 109.46595 * 294.33143 * 7 6 5 9 9 H 1.08993 * 109.47206 * 54.76711 * 8 7 6 10 10 C 1.47198 * 109.47005 * 294.76582 * 8 7 6 11 11 N 5.72215 * 161.14012 * 246.77260 * 2 1 3 12 12 C 1.53005 * 109.46953 * 174.77123 * 8 7 6 13 13 C 1.50693 * 109.47066 * 184.99998 * 12 8 7 14 14 H 1.08001 * 120.00358 * 359.97438 * 13 12 8 15 15 C 1.37874 * 119.99862 * 179.97438 * 13 12 8 16 16 N 1.31515 * 120.00416 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00131 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46789 * 90.00348 * 17 15 13 19 19 H 1.48491 * 109.47161 * 210.00342 * 17 15 13 20 20 H 1.48504 * 109.46812 * 330.00431 * 17 15 13 21 21 C 1.48537 * 105.82094 * 334.66981 * 6 5 4 22 22 H 1.09004 * 109.46568 * 298.30346 * 1 2 3 23 23 H 1.09009 * 109.47331 * 58.29696 * 1 2 3 24 24 H 1.08997 * 109.47650 * 178.30017 * 1 2 3 25 25 H 1.08994 * 110.30827 * 21.39330 * 4 2 1 26 26 H 1.09005 * 110.30293 * 259.22928 * 4 2 1 27 27 H 1.09005 * 109.91342 * 241.86767 * 5 4 2 28 28 H 1.08997 * 110.08259 * 120.66516 * 5 4 2 29 29 H 1.08999 * 109.47178 * 174.33381 * 7 6 5 30 30 H 1.08997 * 109.47534 * 54.32746 * 7 6 5 31 31 H 1.09006 * 109.46753 * 305.00073 * 12 8 7 32 32 H 1.09002 * 109.47425 * 64.99594 * 12 8 7 33 33 H 0.97000 * 120.00343 * 180.02562 * 16 15 13 34 34 H 1.08999 * 110.66452 * 157.64293 * 21 6 5 35 35 H 1.08998 * 110.66824 * 280.77249 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 2.0232 1.3092 0.0000 4 6 2.0771 -0.7909 1.2105 5 6 3.2893 -1.5699 0.6673 6 7 3.4317 -1.2106 -0.7603 7 6 3.9209 -2.3525 -1.5444 8 6 5.3444 -2.7006 -1.1044 9 1 5.3609 -2.8695 -0.0278 10 6 6.2477 -1.5881 -1.4405 11 7 6.9449 -0.7295 -1.6998 12 6 5.8058 -3.9681 -1.8267 13 6 7.1576 -4.3804 -1.3038 14 1 7.6397 -3.7966 -0.5336 15 6 7.7789 -5.5029 -1.8085 16 7 7.1922 -6.2136 -2.7467 17 14 9.4550 -6.0137 -1.1608 18 1 9.2809 -6.9327 -0.0075 19 1 10.2111 -6.7056 -2.2353 20 1 10.2053 -4.8086 -0.7247 21 6 2.0781 -0.7966 -1.2107 22 1 -0.3632 0.4873 0.9049 23 1 -0.3634 0.5401 -0.8744 24 1 -0.3634 -1.0271 -0.0305 25 1 1.3208 -1.4808 1.5847 26 1 2.3896 -0.1067 1.9993 27 1 3.1159 -2.6416 0.7650 28 1 4.1900 -1.2884 1.2126 29 1 3.9210 -2.0930 -2.6030 30 1 3.2698 -3.2112 -1.3808 31 1 5.0878 -4.7690 -1.6494 32 1 5.8744 -3.7720 -2.8967 33 1 7.6291 -7.0036 -3.1015 34 1 2.1443 -0.1593 -2.0925 35 1 1.4558 -1.6688 -1.4110 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347372730.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:35 Heat of formation + Delta-G solvation = -54.458697 kcal Electronic energy + Delta-G solvation = -17080.427489 eV Core-core repulsion = 14219.384420 eV Total energy + Delta-G solvation = -2861.043069 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.133 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.53323 -39.99202 -37.83227 -35.68306 -34.47415 -32.56300 -30.67104 -28.76410 -26.61886 -24.71551 -23.60595 -22.09533 -21.20567 -18.53415 -18.19404 -17.32582 -16.96590 -16.52725 -16.10694 -15.69155 -15.43432 -14.79648 -14.68032 -14.54677 -14.22409 -13.87227 -13.63969 -13.38761 -13.12734 -13.09902 -13.04305 -12.82244 -12.60767 -12.46113 -12.33962 -12.04450 -11.82105 -11.74160 -11.45332 -11.34019 -11.07292 -10.55005 -9.35340 -8.19984 -6.28136 1.39829 1.42294 1.51399 2.03108 2.10876 2.41305 2.93358 3.15519 3.29988 3.32336 3.54482 3.68013 3.92033 4.12250 4.25925 4.32804 4.40398 4.61798 4.66862 4.73341 4.77186 4.78927 4.89964 4.94911 5.01306 5.11237 5.22824 5.33200 5.45421 5.60600 5.77946 5.91661 5.99888 6.21024 6.81666 6.90742 7.40568 8.90886 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.043702 B = 0.004967 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.551534 B = 5636.007930 C = 5794.117790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.102 3.898 3 F -0.223 7.223 4 C -0.143 4.143 5 C 0.026 3.974 6 N -0.544 5.544 7 C 0.065 3.935 8 C 0.022 3.978 9 H 0.115 0.885 10 C 0.264 3.736 11 N -0.516 5.516 12 C 0.039 3.961 13 C -0.540 4.540 14 H 0.051 0.949 15 C 0.014 3.986 16 N -0.922 5.922 17 Si 0.948 3.052 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.278 1.278 21 C 0.017 3.983 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.001 0.999 33 H 0.264 0.736 34 H 0.081 0.919 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.009 6.259 7.372 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.083 3.917 3 F -0.203 7.203 4 C -0.181 4.181 5 C -0.101 4.101 6 N -0.268 5.268 7 C -0.064 4.064 8 C 0.000 4.000 9 H 0.133 0.867 10 C -0.052 4.052 11 N -0.194 5.194 12 C 0.000 4.000 13 C -0.578 4.578 14 H 0.070 0.930 15 C -0.185 4.185 16 N -0.562 5.562 17 Si 0.774 3.226 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.203 1.203 21 C -0.111 4.111 22 H 0.095 0.905 23 H 0.089 0.911 24 H 0.116 0.884 25 H 0.133 0.867 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.534 7.852 6.805 18.688 hybrid contribution 0.672 -1.155 0.122 1.342 sum -14.862 6.697 6.927 17.712 Atomic orbital electron populations 1.22239 0.90308 1.05133 1.03986 1.22042 0.95598 0.77473 0.96570 1.92822 1.89967 1.40034 1.97509 1.23070 0.98137 0.99820 0.97091 1.22998 0.98752 0.99851 0.88516 1.64742 1.24119 1.34535 1.03412 1.22260 0.92962 0.92789 0.98387 1.19201 0.89989 0.87854 1.02956 0.86707 1.29434 0.92133 0.92464 0.91163 1.80974 1.12526 1.14492 1.11379 1.18998 0.95773 0.90608 0.94612 1.21531 1.04518 1.10182 1.21611 0.93030 1.25678 1.01018 0.96663 0.95160 1.70022 1.39983 1.17718 1.28491 0.85706 0.80203 0.78314 0.78427 1.18990 1.20952 1.20311 1.23860 0.89423 1.00077 0.97706 0.90533 0.91124 0.88385 0.86711 0.90129 0.90983 0.91346 0.90563 0.90102 0.94271 0.98024 0.92663 0.90048 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 8.93 71.98 0.64 -1.26 16 2 C 0.10 1.94 1.71 -9.59 -0.02 1.93 16 3 F -0.22 -6.02 16.98 44.97 0.76 -5.26 16 4 C -0.14 -2.43 6.32 31.47 0.20 -2.23 16 5 C 0.03 0.58 5.52 86.45 0.48 1.06 16 6 N -0.54 -14.37 5.00 -882.99 -4.42 -18.79 16 7 C 0.07 1.84 4.10 86.31 0.35 2.19 16 8 C 0.02 0.79 2.17 -12.60 -0.03 0.77 16 9 H 0.12 3.85 7.18 -2.39 -0.02 3.84 16 10 C 0.26 11.40 13.67 89.44 1.22 12.62 16 11 N -0.52 -24.52 18.54 20.01 0.37 -24.15 16 12 C 0.04 1.78 4.42 29.85 0.13 1.92 16 13 C -0.54 -28.70 8.60 25.60 0.22 -28.48 16 14 H 0.05 2.74 7.59 -2.91 -0.02 2.71 16 15 C 0.01 0.76 5.46 84.65 0.46 1.22 16 16 N -0.92 -52.60 13.29 21.45 0.28 -52.31 16 17 Si 0.95 43.41 29.54 68.60 2.03 45.44 16 18 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 21 C 0.02 0.35 5.81 86.65 0.50 0.86 16 22 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 23 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 24 H 0.10 0.76 8.12 -2.39 -0.02 0.74 16 25 H 0.11 1.26 7.85 -2.39 -0.02 1.24 16 26 H 0.08 1.43 8.12 -2.38 -0.02 1.42 16 27 H 0.07 1.37 7.64 -2.38 -0.02 1.35 16 28 H 0.07 1.69 8.09 -2.39 -0.02 1.67 16 29 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.08 1.91 7.94 -2.39 -0.02 1.89 16 31 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 1.40 7.91 -2.39 -0.02 1.38 16 Total: -1.00 -66.51 298.98 4.26 -62.26 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: 1.06 Total: 2.22 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 4.17 Total: -9.40 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -3.76 Total: -95.25 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.76 Total: -5.26 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -66.51 4.26 -62.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347372730.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.797 kcal (2) G-P(sol) polarization free energy of solvation -66.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds