Wall clock time and date at job start Sun Mar 29 2020 22:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46803 * 2 1 4 4 N 1.46500 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99689 * 271.61383 * 4 3 2 6 6 H 1.07999 * 120.00432 * 326.17142 * 5 4 3 7 7 C 1.38820 * 119.99854 * 146.16782 * 5 4 3 8 8 N 1.31614 * 119.99948 * 336.41310 * 7 5 4 9 9 Si 1.86801 * 119.99895 * 156.40961 * 7 5 4 10 10 H 1.48498 * 109.46888 * 84.96831 * 9 7 5 11 11 H 1.48498 * 109.47012 * 204.96959 * 9 7 5 12 12 H 1.48500 * 109.46988 * 324.97147 * 9 7 5 13 13 C 1.46500 * 120.00439 * 91.61376 * 4 3 2 14 14 C 1.50699 * 109.47097 * 89.99924 * 13 4 3 15 15 N 1.30737 * 125.53600 * 0.02761 * 14 13 4 16 16 C 1.34451 * 109.93945 * 179.97438 * 15 14 13 17 17 O 1.21728 * 125.91948 * 180.02562 * 16 15 14 18 18 N 1.34994 * 108.15443 * 359.97438 * 16 15 14 19 19 C 1.46499 * 126.86021 * 179.97438 * 18 16 15 20 20 N 1.35154 * 125.54199 * 179.71486 * 14 13 4 21 21 H 0.97006 * 126.64559 * 0.05081 * 20 14 13 22 22 H 1.08998 * 109.46986 * 59.99849 * 1 2 3 23 23 H 1.08996 * 109.47205 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46951 * 300.00283 * 1 2 3 25 25 H 1.08998 * 109.47268 * 240.00127 * 2 1 3 26 26 H 1.08996 * 109.47286 * 119.99709 * 2 1 3 27 27 H 1.09004 * 109.46838 * 299.99626 * 3 2 1 28 28 H 1.08998 * 109.47105 * 60.00027 * 3 2 1 29 29 H 0.97003 * 120.00042 * 179.97438 * 8 7 5 30 30 H 1.08994 * 109.47416 * 209.99958 * 13 4 3 31 31 H 1.09000 * 109.47110 * 330.00050 * 13 4 3 32 32 H 1.09004 * 109.47073 * 0.02956 * 19 18 16 33 33 H 1.09002 * 109.47189 * 120.02468 * 19 18 16 34 34 H 1.08995 * 109.47400 * 240.02595 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.4090 1.1846 6 1 3.7876 1.9052 2.0553 7 6 5.4020 0.7370 1.2669 8 7 5.6797 -0.2261 0.4140 9 14 6.6388 1.2000 2.5881 10 1 6.3146 0.4777 3.8444 11 1 8.0045 0.8263 2.1405 12 1 6.5803 2.6640 2.8297 13 6 4.2370 1.4785 -1.2691 14 6 4.4880 2.9110 -1.6638 15 7 4.1138 3.9633 -0.9841 16 6 4.5001 5.0822 -1.6216 17 8 4.3028 6.2229 -1.2452 18 7 5.1458 4.7213 -2.7508 19 6 5.7362 5.6157 -3.7496 20 7 5.1417 3.3168 -2.7750 21 1 5.5308 2.7483 -3.4579 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9563 0.8900 29 1 6.5267 -0.6954 0.4713 30 1 5.1894 0.9612 -1.1537 31 1 3.6477 0.9864 -2.0428 32 1 5.5794 6.6513 -3.4479 33 1 6.8053 5.4180 -3.8276 34 1 5.2635 5.4434 -4.7164 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347496474.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:59 Heat of formation + Delta-G solvation = 53.235304 kcal Electronic energy + Delta-G solvation = -17650.775309 eV Core-core repulsion = 14814.322164 eV Total energy + Delta-G solvation = -2836.453146 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.133 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.07084 -38.55855 -37.77985 -35.09012 -34.49660 -32.66005 -32.25027 -29.43023 -27.28745 -26.99941 -24.06394 -22.66011 -22.13754 -21.46383 -19.33581 -18.70036 -17.54624 -17.01962 -16.73970 -16.51338 -15.87692 -15.63526 -14.97700 -14.73907 -14.41608 -14.04270 -13.88812 -13.61604 -13.28920 -12.99901 -12.70354 -12.52625 -12.30565 -12.19118 -12.05228 -11.93960 -11.71537 -11.23431 -10.86588 -10.74335 -10.50783 -9.49039 -8.65241 -7.90460 -5.37677 0.52620 0.60320 1.43920 1.48184 1.60124 2.48465 2.51979 2.81397 3.27039 3.48284 3.86509 4.07443 4.37514 4.39065 4.43196 4.55025 4.62461 4.69926 4.81780 4.89014 4.95540 5.08382 5.13455 5.26934 5.35984 5.42012 5.57142 5.70793 5.82189 6.38701 6.50094 7.10506 7.14418 7.29678 7.80245 8.29818 9.10072 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.016721 B = 0.009616 C = 0.007172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.170389 B = 2911.151410 C = 3903.222927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C 0.153 3.847 4 N -0.566 5.566 5 C -0.246 4.246 6 H 0.043 0.957 7 C -0.022 4.022 8 N -0.902 5.902 9 Si 0.936 3.064 10 H -0.281 1.281 11 H -0.283 1.283 12 H -0.297 1.297 13 C 0.198 3.802 14 C 0.393 3.607 15 N -0.606 5.606 16 C 0.611 3.389 17 O -0.609 6.609 18 N -0.451 5.451 19 C 0.102 3.898 20 N -0.481 5.481 21 H 0.463 0.537 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.031 0.969 29 H 0.258 0.742 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.932 -0.152 -12.219 12.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.028 3.972 4 N -0.282 5.282 5 C -0.376 4.376 6 H 0.060 0.940 7 C -0.219 4.219 8 N -0.546 5.546 9 Si 0.766 3.234 10 H -0.207 1.207 11 H -0.208 1.208 12 H -0.223 1.223 13 C 0.066 3.934 14 C 0.118 3.882 15 N -0.356 5.356 16 C 0.309 3.691 17 O -0.487 6.487 18 N -0.279 5.279 19 C -0.038 4.038 20 N -0.214 5.214 21 H 0.314 0.686 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.140 0.860 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.241 0.803 -11.430 11.525 hybrid contribution 1.500 0.345 -0.022 1.539 sum 0.258 1.148 -11.452 11.512 Atomic orbital electron populations 1.21675 0.94748 1.01701 1.01684 1.21887 0.95646 0.98306 1.00879 1.21000 0.82565 0.94677 0.99004 1.43578 1.01055 1.82229 1.01345 1.19035 1.03273 1.25419 0.89916 0.93959 1.25320 1.01148 0.95574 0.99872 1.69921 1.24080 1.20771 1.39844 0.85794 0.79718 0.77352 0.80564 1.20744 1.20838 1.22336 1.20240 1.02349 0.82325 0.88535 1.27142 0.81772 1.00026 0.79287 1.71862 1.34201 0.97860 1.31677 1.18762 0.80663 0.89575 0.80084 1.90801 1.65200 1.21075 1.71638 1.49524 1.57009 0.95507 1.25840 1.22135 0.99497 0.92123 0.90053 1.45262 1.55369 0.95404 1.25366 0.68593 0.92088 0.92176 0.93256 0.92709 0.94472 0.93191 0.95084 0.93283 0.85987 0.87684 0.88870 0.88863 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.91 71.98 0.71 -3.09 16 2 C -0.13 -4.47 6.26 30.60 0.19 -4.28 16 3 C 0.15 6.09 5.67 86.38 0.49 6.58 16 4 N -0.57 -25.86 2.15 -706.34 -1.52 -27.38 16 5 C -0.25 -12.99 9.49 84.04 0.80 -12.20 16 6 H 0.04 2.40 7.93 -2.91 -0.02 2.38 16 7 C -0.02 -1.12 4.94 84.86 0.42 -0.70 16 8 N -0.90 -45.88 11.34 21.65 0.25 -45.63 16 9 Si 0.94 43.99 29.61 68.60 2.03 46.02 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 13 C 0.20 7.64 5.91 85.63 0.51 8.14 16 14 C 0.39 14.96 8.02 138.02 1.11 16.07 16 15 N -0.61 -28.73 10.83 -316.04 -3.42 -32.15 16 16 C 0.61 27.88 8.97 179.09 1.61 29.48 16 17 O -0.61 -31.91 17.69 -4.44 -0.08 -31.99 16 18 N -0.45 -14.50 4.06 -500.00 -2.03 -16.53 16 19 C 0.10 2.04 11.57 127.77 1.48 3.52 16 20 N -0.48 -13.45 7.36 -50.36 -0.37 -13.82 16 21 H 0.46 8.03 8.96 -213.07 -1.91 6.12 16 22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.84 8.06 -2.38 -0.02 1.82 16 28 H 0.03 1.32 8.05 -2.39 -0.02 1.30 16 29 H 0.26 12.69 8.31 -92.71 -0.77 11.92 16 30 H 0.12 5.20 5.33 -2.39 -0.01 5.19 16 31 H 0.11 3.28 8.07 -2.39 -0.02 3.26 16 32 H 0.09 2.09 7.80 -2.39 -0.02 2.07 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -73.61 294.61 1.36 -72.24 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -0.81 Total: 5.71 kcal Atomic # 6 Polarization: 36.21 SS G_CDS: 7.31 Total: 43.52 kcal Atomic # 7 Polarization: -128.41 SS G_CDS: -7.09 Total: -135.50 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.08 Total: -31.99 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -73.61 1.36 -72.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347496474.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.479 kcal (2) G-P(sol) polarization free energy of solvation -73.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds