Wall clock time and date at job start Sun Mar 29 2020 22:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99717 * 2 1 4 4 H 1.48501 * 109.46608 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47144 * 299.99433 * 3 2 1 6 6 H 1.48494 * 109.47494 * 59.99688 * 3 2 1 7 7 C 1.37875 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99857 * 359.72866 * 7 2 1 10 10 N 1.46901 * 109.47025 * 174.99821 * 9 7 2 11 11 C 1.46846 * 110.99940 * 300.69388 * 10 9 7 12 12 C 1.53043 * 109.52705 * 185.84048 * 11 10 9 13 13 C 1.53119 * 109.27293 * 300.82276 * 12 11 10 14 14 C 1.53004 * 109.56947 * 177.59059 * 13 12 11 15 15 C 1.52998 * 109.47230 * 65.28285 * 14 13 12 16 16 C 1.50707 * 109.46939 * 179.97438 * 15 14 13 17 17 N 1.34772 * 119.99677 * 180.02562 * 16 15 14 18 18 O 1.21277 * 119.99829 * 359.97438 * 16 15 14 19 19 C 1.53117 * 109.16405 * 57.65542 * 13 12 11 20 20 C 1.46846 * 111.00467 * 64.90491 * 10 9 7 21 21 H 0.97005 * 120.00330 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47380 * 294.99570 * 9 7 2 23 23 H 1.09000 * 109.47417 * 54.99673 * 9 7 2 24 24 H 1.08998 * 109.46431 * 305.85781 * 11 10 9 25 25 H 1.09001 * 109.46282 * 65.82305 * 11 10 9 26 26 H 1.08994 * 109.50185 * 180.87989 * 12 11 10 27 27 H 1.08996 * 109.49882 * 60.75716 * 12 11 10 28 28 H 1.08997 * 109.52509 * 297.74499 * 13 12 11 29 29 H 1.09003 * 109.46693 * 185.28318 * 14 13 12 30 30 H 1.08996 * 109.47321 * 305.27862 * 14 13 12 31 31 H 1.08995 * 109.47115 * 299.99918 * 15 14 13 32 32 H 1.09000 * 109.47039 * 60.00275 * 15 14 13 33 33 H 0.97002 * 120.00444 * 0.02562 * 17 16 15 34 34 H 0.96999 * 119.99854 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.50148 * 182.40235 * 19 13 12 36 36 H 1.08994 * 109.53641 * 62.30127 * 19 13 12 37 37 H 1.09006 * 109.45826 * 294.17926 * 20 10 9 38 38 H 1.09003 * 109.46067 * 54.15415 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0073 10 7 2.2006 -3.6133 -0.1142 11 6 2.9779 -3.5093 -1.3557 12 6 3.8489 -4.7570 -1.5200 13 6 4.7877 -4.8800 -0.3166 14 6 5.6198 -6.1576 -0.4443 15 6 6.5432 -6.0456 -1.6591 16 6 7.3632 -7.3038 -1.7844 17 7 8.2529 -7.4309 -2.7888 18 8 7.2232 -8.2014 -0.9810 19 6 3.9548 -4.9380 0.9669 20 6 3.0808 -3.6851 1.0590 21 1 -0.4851 0.8401 -0.0004 22 1 0.6971 -2.5940 0.9413 23 1 0.5554 -2.5214 -0.8316 24 1 2.2984 -3.4265 -2.2039 25 1 3.6142 -2.6253 -1.3128 26 1 4.4373 -4.6722 -2.4335 27 1 3.2125 -5.6400 -1.5768 28 1 5.4507 -4.0155 -0.2819 29 1 6.2189 -6.2925 0.4563 30 1 4.9557 -7.0127 -0.5704 31 1 5.9442 -5.9106 -2.5596 32 1 7.2074 -5.1905 -1.5329 33 1 8.3657 -6.7125 -3.4307 34 1 8.7804 -8.2409 -2.8697 35 1 4.6190 -4.9826 1.8300 36 1 3.3201 -5.8239 0.9498 37 1 3.7166 -2.8002 1.0906 38 1 2.4759 -3.7302 1.9646 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347937560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:44 Heat of formation + Delta-G solvation = -66.355140 kcal Electronic energy + Delta-G solvation = -17410.735769 eV Core-core repulsion = 14672.637136 eV Total energy + Delta-G solvation = -2738.098633 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.71958 -38.39108 -34.93288 -33.84416 -32.54067 -30.65075 -30.08419 -26.87918 -24.88337 -22.56477 -22.36348 -20.79983 -20.09721 -19.10161 -17.46855 -16.79318 -16.38617 -15.60836 -15.08888 -14.33928 -14.12154 -14.03481 -13.73763 -13.47017 -13.16931 -12.61578 -12.36317 -11.88373 -11.63834 -11.43702 -11.10097 -11.04792 -10.81660 -10.50046 -10.34794 -10.24314 -10.14256 -10.01335 -9.90860 -9.71234 -9.62363 -9.37034 -8.42566 -7.10039 -6.01197 -4.10676 2.50196 3.25706 3.33908 3.36797 3.36901 4.40584 4.71033 4.85055 4.97740 5.10757 5.28548 5.32946 5.40149 5.52185 5.59960 5.89667 5.91792 6.05941 6.13898 6.20991 6.23578 6.40084 6.49020 6.55001 6.59258 6.61226 6.77717 6.83356 6.98673 7.10787 7.34955 7.55080 7.91814 8.08891 8.12618 8.33070 8.38956 9.00884 9.56096 11.03377 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040177 B = 0.004608 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.743775 B = 6074.284437 C = 6358.928151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.186 3.814 10 N -0.542 5.542 11 C 0.065 3.935 12 C -0.112 4.112 13 C -0.087 4.087 14 C -0.097 4.097 15 C -0.144 4.144 16 C 0.515 3.485 17 N -0.862 5.862 18 O -0.545 6.545 19 C -0.110 4.110 20 C 0.063 3.937 21 H 0.261 0.739 22 H 0.026 0.974 23 H 0.034 0.966 24 H 0.062 0.938 25 H 0.036 0.964 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.401 0.599 34 H 0.398 0.602 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.034 0.966 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.897 -10.433 -5.470 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.586 4.586 8 H 0.075 0.925 9 C 0.060 3.940 10 N -0.266 5.266 11 C -0.064 4.064 12 C -0.150 4.150 13 C -0.106 4.106 14 C -0.135 4.135 15 C -0.184 4.184 16 C 0.301 3.699 17 N -0.425 5.425 18 O -0.422 6.422 19 C -0.148 4.148 20 C -0.066 4.066 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.052 0.948 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.229 0.771 34 H 0.228 0.772 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.221 -11.219 -4.867 18.010 hybrid contribution 1.221 1.928 -0.417 2.320 sum 14.442 -9.291 -5.284 17.967 Atomic orbital electron populations 1.69958 1.06002 1.26652 1.50394 1.24973 0.94756 0.99112 0.95021 0.86608 0.80098 0.84062 0.77662 1.19906 1.20960 1.20953 1.21806 0.93349 0.92151 1.51302 0.92502 1.19749 0.90994 0.85572 0.97696 1.62428 1.17309 1.46086 1.00746 1.21826 0.95670 0.95215 0.93691 1.21739 0.97282 0.99608 0.96377 1.21213 0.96367 0.96692 0.96307 1.21399 0.97269 0.98491 0.96296 1.21787 0.98950 0.95294 1.02358 1.20963 0.79524 0.89412 0.80011 1.43968 1.43600 1.23106 1.31871 1.90740 1.67157 1.42461 1.41798 1.21645 0.97662 0.99423 0.96044 1.21851 0.94809 0.95450 0.94453 0.92898 0.95561 0.94815 0.91918 0.94528 0.92720 0.91789 0.91696 0.91588 0.91247 0.88442 0.88900 0.77075 0.77223 0.92615 0.91729 0.94747 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.55 -15.04 7.72 -34.44 -0.27 -15.31 16 8 H 0.06 1.55 5.86 -52.49 -0.31 1.25 16 9 C 0.19 4.83 5.12 -4.98 -0.03 4.80 16 10 N -0.54 -11.71 4.86 -236.11 -1.15 -12.86 16 11 C 0.06 1.25 5.03 -3.83 -0.02 1.23 16 12 C -0.11 -1.66 5.08 -26.65 -0.14 -1.80 16 13 C -0.09 -1.22 2.25 -90.50 -0.20 -1.42 16 14 C -0.10 -1.18 3.98 -26.73 -0.11 -1.29 16 15 C -0.14 -1.38 5.46 -27.88 -0.15 -1.53 16 16 C 0.52 5.52 8.10 -10.98 -0.09 5.43 16 17 N -0.86 -5.66 8.87 31.22 0.28 -5.38 16 18 O -0.54 -8.33 16.82 5.56 0.09 -8.23 16 19 C -0.11 -1.72 5.38 -26.65 -0.14 -1.86 16 20 C 0.06 1.23 5.12 -3.84 -0.02 1.21 16 21 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 22 H 0.03 0.73 8.08 -51.93 -0.42 0.31 16 23 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 25 H 0.04 0.76 6.73 -51.93 -0.35 0.41 16 26 H 0.05 0.68 6.71 -51.93 -0.35 0.33 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 30 H 0.07 0.93 8.10 -51.93 -0.42 0.50 16 31 H 0.10 0.81 6.64 -51.93 -0.34 0.47 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.40 1.44 8.83 -40.82 -0.36 1.08 16 34 H 0.40 2.27 8.93 -40.82 -0.36 1.91 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.03 0.73 6.86 -51.93 -0.36 0.37 16 38 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 LS Contribution 301.58 15.07 4.54 4.54 Total: -1.00 -32.34 301.58 -7.98 -40.32 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.20 Total: -0.33 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -1.26 Total: -8.83 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.13 Total: -43.81 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.34 -7.98 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347937560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.033 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds