Wall clock time and date at job start Sun Mar 29 2020 22:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99717 * 2 1 4 4 H 1.48501 * 109.46608 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47144 * 299.99433 * 3 2 1 6 6 H 1.48494 * 109.47494 * 59.99688 * 3 2 1 7 7 C 1.37875 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99857 * 359.72866 * 7 2 1 10 10 N 1.46901 * 109.47025 * 174.99821 * 9 7 2 11 11 C 1.46846 * 110.99940 * 300.69388 * 10 9 7 12 12 C 1.53043 * 109.52705 * 185.84048 * 11 10 9 13 13 C 1.53119 * 109.27293 * 300.82276 * 12 11 10 14 14 C 1.53004 * 109.56947 * 177.59059 * 13 12 11 15 15 C 1.52998 * 109.47230 * 65.28285 * 14 13 12 16 16 C 1.50707 * 109.46939 * 179.97438 * 15 14 13 17 17 N 1.34772 * 119.99677 * 180.02562 * 16 15 14 18 18 O 1.21277 * 119.99829 * 359.97438 * 16 15 14 19 19 C 1.53117 * 109.16405 * 57.65542 * 13 12 11 20 20 C 1.46846 * 111.00467 * 64.90491 * 10 9 7 21 21 H 0.97005 * 120.00330 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47380 * 294.99570 * 9 7 2 23 23 H 1.09000 * 109.47417 * 54.99673 * 9 7 2 24 24 H 1.08998 * 109.46431 * 305.85781 * 11 10 9 25 25 H 1.09001 * 109.46282 * 65.82305 * 11 10 9 26 26 H 1.08994 * 109.50185 * 180.87989 * 12 11 10 27 27 H 1.08996 * 109.49882 * 60.75716 * 12 11 10 28 28 H 1.08997 * 109.52509 * 297.74499 * 13 12 11 29 29 H 1.09003 * 109.46693 * 185.28318 * 14 13 12 30 30 H 1.08996 * 109.47321 * 305.27862 * 14 13 12 31 31 H 1.08995 * 109.47115 * 299.99918 * 15 14 13 32 32 H 1.09000 * 109.47039 * 60.00275 * 15 14 13 33 33 H 0.97002 * 120.00444 * 0.02562 * 17 16 15 34 34 H 0.96999 * 119.99854 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.50148 * 182.40235 * 19 13 12 36 36 H 1.08994 * 109.53641 * 62.30127 * 19 13 12 37 37 H 1.09006 * 109.45826 * 294.17926 * 20 10 9 38 38 H 1.09003 * 109.46067 * 54.15415 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0073 10 7 2.2006 -3.6133 -0.1142 11 6 2.9779 -3.5093 -1.3557 12 6 3.8489 -4.7570 -1.5200 13 6 4.7877 -4.8800 -0.3166 14 6 5.6198 -6.1576 -0.4443 15 6 6.5432 -6.0456 -1.6591 16 6 7.3632 -7.3038 -1.7844 17 7 8.2529 -7.4309 -2.7888 18 8 7.2232 -8.2014 -0.9810 19 6 3.9548 -4.9380 0.9669 20 6 3.0808 -3.6851 1.0590 21 1 -0.4851 0.8401 -0.0004 22 1 0.6971 -2.5940 0.9413 23 1 0.5554 -2.5214 -0.8316 24 1 2.2984 -3.4265 -2.2039 25 1 3.6142 -2.6253 -1.3128 26 1 4.4373 -4.6722 -2.4335 27 1 3.2125 -5.6400 -1.5768 28 1 5.4507 -4.0155 -0.2819 29 1 6.2189 -6.2925 0.4563 30 1 4.9557 -7.0127 -0.5704 31 1 5.9442 -5.9106 -2.5596 32 1 7.2074 -5.1905 -1.5329 33 1 8.3657 -6.7125 -3.4307 34 1 8.7804 -8.2409 -2.8697 35 1 4.6190 -4.9826 1.8300 36 1 3.3201 -5.8239 0.9498 37 1 3.7166 -2.8002 1.0906 38 1 2.4759 -3.7302 1.9646 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347937560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:44 Heat of formation + Delta-G solvation = -91.135415 kcal Electronic energy + Delta-G solvation = -17411.810322 eV Core-core repulsion = 14672.637136 eV Total energy + Delta-G solvation = -2739.173186 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.62836 -39.78921 -36.41187 -34.62415 -34.43461 -31.98209 -31.48766 -28.63076 -26.40882 -24.16498 -23.80426 -22.14265 -21.02428 -20.54464 -18.48927 -18.10057 -17.58701 -16.90119 -16.49224 -15.90700 -15.77204 -15.17429 -15.08927 -14.83238 -14.49983 -14.14434 -13.72888 -13.35109 -13.12782 -12.89474 -12.82627 -12.67545 -12.16521 -12.15933 -11.95384 -11.82350 -11.74533 -11.38647 -11.05592 -10.95582 -10.83532 -10.61064 -10.58374 -8.96533 -8.13938 -6.35285 1.36358 1.37398 1.49281 1.72412 2.37381 2.71677 3.09434 3.44688 3.85998 3.95109 3.97442 4.17194 4.40757 4.46531 4.51851 4.67161 4.70614 4.80790 4.84102 4.99076 5.01525 5.09451 5.15815 5.22966 5.29908 5.33415 5.34590 5.38878 5.46916 5.65663 5.75376 5.96763 6.07832 6.31116 6.53754 6.63979 6.87439 7.36675 7.43054 8.87763 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040177 B = 0.004608 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.743775 B = 6074.284437 C = 6358.928151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.058 0.942 9 C 0.198 3.802 10 N -0.545 5.545 11 C 0.064 3.936 12 C -0.102 4.102 13 C -0.080 4.080 14 C -0.088 4.088 15 C -0.140 4.140 16 C 0.512 3.488 17 N -0.841 5.841 18 O -0.599 6.599 19 C -0.103 4.103 20 C 0.064 3.936 21 H 0.265 0.735 22 H -0.002 1.002 23 H 0.005 0.995 24 H 0.051 0.949 25 H 0.021 0.979 26 H 0.090 0.910 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.418 0.582 34 H 0.404 0.596 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.018 0.982 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.377 -10.291 -6.585 20.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.076 0.924 9 C 0.071 3.929 10 N -0.269 5.269 11 C -0.065 4.065 12 C -0.139 4.139 13 C -0.099 4.099 14 C -0.126 4.126 15 C -0.179 4.179 16 C 0.299 3.701 17 N -0.405 5.405 18 O -0.480 6.480 19 C -0.141 4.141 20 C -0.064 4.064 21 H 0.074 0.926 22 H 0.016 0.984 23 H 0.023 0.977 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.250 0.750 34 H 0.235 0.765 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 15.741 -11.075 -6.030 20.169 hybrid contribution 0.431 1.858 -0.090 1.909 sum 16.172 -9.217 -6.120 19.594 Atomic orbital electron populations 1.70085 1.07692 1.27819 1.51248 1.25868 0.95624 1.03006 0.94517 0.85479 0.78988 0.79215 0.77837 1.18922 1.20224 1.20491 1.22012 0.93421 0.92872 1.51018 0.92393 1.19413 0.91451 0.87138 0.94922 1.62375 1.18031 1.43765 1.02685 1.21908 0.95478 0.97147 0.91941 1.21689 0.96962 0.96822 0.98438 1.21145 0.96087 0.97932 0.94688 1.21224 0.97132 0.96620 0.97587 1.21768 0.98960 0.95517 1.01686 1.21162 0.79869 0.89072 0.80013 1.43793 1.42010 1.23838 1.30820 1.90728 1.69030 1.44227 1.44025 1.21606 0.97474 0.96854 0.98182 1.21889 0.94472 0.96972 0.93091 0.92621 0.98385 0.97677 0.93077 0.96107 0.89207 0.91822 0.91221 0.92185 0.92474 0.86583 0.86645 0.75028 0.76505 0.90725 0.91806 0.96371 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.96 43.82 29.54 68.60 2.03 45.84 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.55 -31.05 7.72 25.60 0.20 -30.85 16 8 H 0.06 3.18 5.86 -2.91 -0.02 3.16 16 9 C 0.20 10.72 5.12 85.56 0.44 11.16 16 10 N -0.54 -24.02 4.86 -900.92 -4.38 -28.40 16 11 C 0.06 2.43 5.03 86.33 0.43 2.86 16 12 C -0.10 -2.76 5.08 30.65 0.16 -2.61 16 13 C -0.08 -2.03 2.25 -10.71 -0.02 -2.06 16 14 C -0.09 -1.92 3.98 30.59 0.12 -1.80 16 15 C -0.14 -2.16 5.46 29.85 0.16 -2.00 16 16 C 0.51 9.66 8.10 87.66 0.71 10.37 16 17 N -0.84 -8.43 8.87 -173.54 -1.54 -9.97 16 18 O -0.60 -17.57 16.82 -3.02 -0.05 -17.62 16 19 C -0.10 -3.10 5.38 30.64 0.16 -2.93 16 20 C 0.06 2.53 5.12 86.32 0.44 2.97 16 21 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 22 H 0.00 -0.12 8.08 -2.38 -0.02 -0.14 16 23 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 24 H 0.05 2.03 8.12 -2.39 -0.02 2.01 16 25 H 0.02 0.86 6.73 -2.39 -0.02 0.84 16 26 H 0.09 1.85 6.71 -2.39 -0.02 1.84 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 30 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 31 H 0.12 1.39 6.64 -2.39 -0.02 1.37 16 32 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.42 1.39 8.83 -92.71 -0.82 0.57 16 34 H 0.40 3.55 8.93 -92.71 -0.83 2.72 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.02 0.77 6.86 -2.38 -0.02 0.75 16 38 H 0.05 2.05 8.08 -2.39 -0.02 2.03 16 Total: -1.00 -71.88 301.58 -0.98 -72.86 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -0.59 Total: 6.81 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 3.27 Total: -13.91 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -5.63 Total: -93.99 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.05 Total: -17.62 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -71.88 -0.98 -72.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347937560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.274 kcal (2) G-P(sol) polarization free energy of solvation -71.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds