Wall clock time and date at job start Sun Mar 29 2020 22:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34783 * 119.99764 * 2 1 4 4 O 1.21286 * 119.99918 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99924 * 0.02562 * 3 2 1 6 6 C 1.53009 * 109.46802 * 179.97438 * 5 3 2 7 7 C 1.50704 * 109.46916 * 179.97438 * 6 5 3 8 8 H 1.08001 * 119.99936 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00013 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00097 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99599 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46865 * 90.00173 * 11 9 7 13 13 H 1.48506 * 109.46687 * 210.00038 * 11 9 7 14 14 H 1.48492 * 109.47136 * 329.99689 * 11 9 7 15 15 C 1.46498 * 120.00268 * 179.97438 * 2 1 3 16 16 H 1.09002 * 110.43709 * 180.70256 * 15 2 1 17 17 C 1.54626 * 110.48206 * 58.16009 * 15 2 1 18 18 C 1.54479 * 101.76317 * 216.39189 * 17 15 2 19 19 N 1.46755 * 105.47503 * 25.41664 * 18 17 15 20 20 C 1.34416 * 111.30138 * 342.98369 * 19 18 17 21 21 O 1.21286 * 124.94311 * 180.45037 * 20 19 18 22 22 H 1.09000 * 109.47237 * 270.00082 * 1 2 3 23 23 H 1.09002 * 109.47048 * 30.00331 * 1 2 3 24 24 H 1.08994 * 109.46565 * 149.99690 * 1 2 3 25 25 H 1.08999 * 109.47375 * 299.99146 * 5 3 2 26 26 H 1.09001 * 109.47804 * 59.99932 * 5 3 2 27 27 H 1.08994 * 109.46882 * 299.99549 * 6 5 3 28 28 H 1.09004 * 109.47229 * 59.99908 * 6 5 3 29 29 H 0.97004 * 120.00140 * 179.97438 * 10 9 7 30 30 H 1.08995 * 110.97588 * 334.51379 * 17 15 2 31 31 H 1.09001 * 110.96892 * 98.24172 * 17 15 2 32 32 H 1.08999 * 110.25050 * 144.41995 * 18 17 15 33 33 H 1.09001 * 110.24922 * 266.41813 * 18 17 15 34 34 H 0.97001 * 124.35534 * 162.97918 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3518 1.1673 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3797 3.6353 0.0011 7 6 1.6261 4.9404 0.0011 8 1 0.5461 4.9404 0.0003 9 6 2.3154 6.1345 0.0020 10 7 1.6579 7.2734 0.0015 11 14 4.1835 6.1344 0.0041 12 1 4.6800 6.1347 -1.3954 13 1 4.6777 7.3469 0.7049 14 1 4.6776 4.9219 0.7045 15 6 2.1976 -1.2687 0.0006 16 1 3.2724 -1.0876 0.0130 17 6 1.8064 -2.1199 -1.2296 18 6 1.8315 -3.5493 -0.6443 19 7 1.5865 -3.3880 0.7936 20 6 1.7901 -2.1181 1.1842 21 8 1.6660 -1.7124 2.3204 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3632 -0.8899 -0.5139 25 1 0.7584 2.5303 -0.8892 26 1 0.7590 2.5299 0.8908 27 1 3.0062 3.5772 0.8911 28 1 3.0064 3.5780 -0.8889 29 1 2.1428 8.1135 0.0025 30 1 0.8083 -1.8602 -1.5823 31 1 2.5404 -2.0118 -2.0281 32 1 1.0457 -4.1554 -1.0952 33 1 2.8058 -4.0085 -0.8118 34 1 1.3128 -4.1056 1.3861 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360402808.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:15 Heat of formation + Delta-G solvation = -68.979561 kcal Electronic energy + Delta-G solvation = -17298.487738 eV Core-core repulsion = 14424.442207 eV Total energy + Delta-G solvation = -2874.045531 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.88995 -38.98543 -36.59347 -35.11582 -33.51512 -31.52809 -30.49197 -27.99194 -26.69548 -25.56661 -22.32355 -21.63029 -20.15309 -18.76742 -17.63019 -17.48119 -16.63982 -16.02143 -15.65189 -15.33973 -14.51834 -14.08110 -14.01437 -13.81167 -13.24575 -13.13782 -12.75465 -12.56281 -12.35033 -12.31916 -12.25249 -11.38999 -11.33865 -10.94472 -10.25712 -10.11530 -10.00103 -9.75930 -9.43855 -9.25618 -9.14212 -8.54798 -8.47584 -6.00448 -3.99016 2.27459 2.89554 3.06581 3.27194 3.40133 3.46773 3.58595 4.11251 4.27312 4.53712 4.54636 4.66352 4.96879 5.12219 5.12903 5.34751 5.35784 5.42499 5.57833 5.68039 5.77772 6.06166 6.12911 6.38492 6.59648 6.69185 6.69918 7.38345 7.46402 7.50831 7.81356 8.02667 8.48397 8.58586 9.02424 9.62741 11.12395 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.046551 B = 0.005134 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.345917 B = 5452.229949 C = 5578.426853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.609 5.609 3 C 0.517 3.483 4 O -0.536 6.536 5 C -0.118 4.118 6 C 0.000 4.000 7 C -0.524 4.524 8 H 0.073 0.927 9 C 0.070 3.930 10 N -0.904 5.904 11 Si 0.877 3.123 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.261 1.261 15 C 0.108 3.892 16 H 0.135 0.865 17 C -0.146 4.146 18 C 0.104 3.896 19 N -0.735 5.735 20 C 0.509 3.491 21 O -0.515 6.515 22 H 0.058 0.942 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.024 0.976 28 H 0.019 0.981 29 H 0.263 0.737 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.774 -23.613 -4.057 24.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.345 5.345 3 C 0.308 3.692 4 O -0.412 6.412 5 C -0.158 4.158 6 C -0.037 4.037 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.132 4.132 10 N -0.543 5.543 11 Si 0.704 3.296 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.185 1.185 15 C -0.001 4.001 16 H 0.152 0.848 17 C -0.185 4.185 18 C -0.021 4.021 19 N -0.392 5.392 20 C 0.293 3.707 21 O -0.389 6.389 22 H 0.076 0.924 23 H 0.103 0.897 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.122 -23.056 -3.515 23.419 hybrid contribution 0.702 -0.378 0.209 0.824 sum -1.420 -23.434 -3.306 23.709 Atomic orbital electron populations 1.21834 0.79214 1.03279 1.02376 1.47742 1.06895 1.04323 1.75493 1.21663 0.88387 0.85459 0.73654 1.90636 1.14479 1.87107 1.48930 1.21703 1.00256 0.90468 1.03338 1.19400 0.94475 0.92166 0.97709 1.21101 0.94966 0.88820 1.51291 0.90909 1.24960 0.98457 0.95436 0.94324 1.69909 1.35825 0.97417 1.51130 0.86805 0.86268 0.77854 0.78707 1.20244 1.21437 1.18504 1.21593 1.00901 0.84575 0.92983 0.84760 1.23047 1.04448 0.93105 0.97864 1.22059 1.02128 0.97699 0.80235 1.46147 1.70926 1.11156 1.11002 1.21225 0.76163 0.83338 0.89992 1.90777 1.50729 1.75913 1.21454 0.92353 0.89650 0.91564 0.89435 0.89360 0.95759 0.96243 0.92733 0.89112 0.88422 0.89991 0.90694 0.75118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 9.49 59.85 0.57 1.42 16 2 N -0.61 -8.96 2.85 -173.95 -0.50 -9.45 16 3 C 0.52 9.90 7.67 -10.98 -0.08 9.82 16 4 O -0.54 -12.12 15.34 5.55 0.09 -12.04 16 5 C -0.12 -2.36 4.19 -27.88 -0.12 -2.48 16 6 C 0.00 0.01 3.33 -27.88 -0.09 -0.08 16 7 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 10 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 11 Si 0.88 22.85 27.47 -169.99 -4.67 18.18 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 15 C 0.11 1.35 3.34 -67.94 -0.23 1.13 16 16 H 0.13 1.92 6.98 -51.93 -0.36 1.56 16 17 C -0.15 -1.09 6.70 -25.10 -0.17 -1.26 16 18 C 0.10 0.56 7.78 -3.13 -0.02 0.53 16 19 N -0.73 -6.08 6.24 -59.21 -0.37 -6.45 16 20 C 0.51 6.68 7.50 -10.86 -0.08 6.60 16 21 O -0.52 -9.23 18.02 5.55 0.10 -9.13 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.08 0.90 6.44 -51.93 -0.33 0.57 16 24 H 0.07 0.55 6.35 -51.93 -0.33 0.22 16 25 H 0.09 1.56 7.40 -51.93 -0.38 1.18 16 26 H 0.09 1.69 8.11 -51.93 -0.42 1.27 16 27 H 0.02 0.65 7.15 -51.93 -0.37 0.28 16 28 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 30 H 0.09 0.61 6.27 -51.93 -0.33 0.28 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.41 2.68 8.96 -40.82 -0.37 2.32 16 LS Contribution 283.83 15.07 4.28 4.28 Total: -1.00 -37.29 283.83 -5.52 -42.81 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -4.56 Total: -2.91 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.66 Total: 2.18 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -0.09 Total: -43.37 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.19 Total: -21.17 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.67 Total: 18.18 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -37.29 -5.52 -42.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360402808.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.170 kcal (2) G-P(sol) polarization free energy of solvation -37.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds