Wall clock time and date at job start Sun Mar 29 2020 22:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99736 * 2 1 4 4 O 1.21282 * 119.99620 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00369 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.47466 * 180.02562 * 5 3 2 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 3 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47094 * 90.00289 * 11 9 7 13 13 H 1.48505 * 109.47195 * 210.00171 * 11 9 7 14 14 H 1.48493 * 109.47449 * 330.00136 * 11 9 7 15 15 C 1.46505 * 120.00149 * 179.97438 * 2 1 3 16 16 H 1.08995 * 110.43292 * 181.08920 * 15 2 1 17 17 C 1.54628 * 110.48280 * 303.77559 * 15 2 1 18 18 C 1.54482 * 101.76003 * 143.47713 * 17 15 2 19 19 N 1.46758 * 105.47379 * 334.57850 * 18 17 15 20 20 C 1.34417 * 111.30323 * 17.02233 * 19 18 17 21 21 O 1.21279 * 124.94522 * 179.55823 * 20 19 18 22 22 H 1.08996 * 109.46784 * 90.00263 * 1 2 3 23 23 H 1.09003 * 109.47146 * 209.99886 * 1 2 3 24 24 H 1.08994 * 109.47096 * 330.00470 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99760 * 5 3 2 26 26 H 1.08998 * 109.46862 * 300.00562 * 5 3 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 6 5 3 28 28 H 1.09001 * 109.46832 * 299.99964 * 6 5 3 29 29 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 30 30 H 1.08999 * 110.96976 * 261.59026 * 17 15 2 31 31 H 1.08997 * 110.97586 * 25.35737 * 17 15 2 32 32 H 1.09005 * 110.24662 * 215.58150 * 18 17 15 33 33 H 1.09001 * 110.32098 * 93.62241 * 18 17 15 34 34 H 0.97004 * 124.34960 * 196.99264 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6353 -0.0011 7 6 1.6260 4.9404 -0.0023 8 1 0.5461 4.9403 -0.0023 9 6 2.3154 6.1344 -0.0024 10 7 3.6305 6.1344 -0.0020 11 14 1.3814 7.7521 -0.0032 12 1 1.1335 8.1812 1.3966 13 1 2.1841 8.7869 -0.7033 14 1 0.0841 7.5743 -0.7036 15 6 2.1976 -1.2687 0.0006 16 1 3.2722 -1.0877 0.0199 17 6 1.7708 -2.1395 1.2050 18 6 1.8100 -3.5590 0.5969 19 7 1.6055 -3.3733 -0.8445 20 6 1.8220 -2.0975 -1.2080 21 8 1.7301 -1.6727 -2.3403 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 0.7584 2.5302 0.8891 26 1 0.7591 2.5298 -0.8908 27 1 3.0063 3.5771 -0.8911 28 1 3.0062 3.5779 0.8889 29 1 4.1155 6.9745 -0.0024 30 1 2.4827 -2.0467 2.0252 31 1 0.7636 -1.8837 1.5339 32 1 1.0109 -4.1709 1.0154 33 1 2.7778 -4.0243 0.7838 34 1 1.3477 -4.0805 -1.4563 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360402822.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:16 Heat of formation + Delta-G solvation = -101.511486 kcal Electronic energy + Delta-G solvation = -17242.778054 eV Core-core repulsion = 14367.321833 eV Total energy + Delta-G solvation = -2875.456221 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.89308 -40.29343 -37.60612 -36.27608 -35.60279 -33.15214 -31.41791 -28.86105 -27.97222 -26.92997 -23.89141 -22.83060 -21.49248 -20.02848 -18.95628 -18.49934 -18.00878 -17.12365 -16.85014 -16.62843 -16.39490 -15.48360 -15.05048 -14.85899 -14.56503 -14.20299 -14.14967 -13.81897 -13.50386 -13.40637 -13.08376 -12.88549 -12.80681 -12.45023 -12.12119 -11.93272 -11.60920 -11.31910 -11.30508 -10.78234 -10.56166 -10.13940 -9.67517 -8.17340 -6.31676 1.24027 1.42826 1.46051 1.56979 1.59083 1.98910 2.40486 2.45073 3.15697 3.31396 3.51453 3.79050 3.96171 4.06951 4.23232 4.42303 4.46030 4.53113 4.63902 4.76929 4.81504 4.99901 5.05444 5.08782 5.41834 5.50545 5.61428 5.78260 5.84650 5.93821 6.17209 6.25089 6.86052 7.13765 7.17849 7.38576 8.95627 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.053004 B = 0.004683 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.135408 B = 5978.017436 C = 6029.813512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.601 5.601 3 C 0.512 3.488 4 O -0.585 6.585 5 C -0.113 4.113 6 C 0.042 3.958 7 C -0.543 4.543 8 H 0.077 0.923 9 C -0.007 4.007 10 N -0.938 5.938 11 Si 0.976 3.024 12 H -0.268 1.268 13 H -0.287 1.287 14 H -0.256 1.256 15 C 0.093 3.907 16 H 0.106 0.894 17 C -0.133 4.133 18 C 0.105 3.895 19 N -0.713 5.713 20 C 0.503 3.497 21 O -0.577 6.577 22 H 0.049 0.951 23 H 0.106 0.894 24 H 0.095 0.905 25 H 0.113 0.887 26 H 0.095 0.905 27 H -0.024 1.024 28 H -0.013 1.013 29 H 0.263 0.737 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.451 -22.109 5.496 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.334 5.334 3 C 0.303 3.697 4 O -0.465 6.465 5 C -0.153 4.153 6 C 0.004 3.996 7 C -0.580 4.580 8 H 0.095 0.905 9 C -0.204 4.204 10 N -0.578 5.578 11 Si 0.799 3.201 12 H -0.194 1.194 13 H -0.213 1.213 14 H -0.180 1.180 15 C -0.014 4.014 16 H 0.124 0.876 17 C -0.172 4.172 18 C -0.018 4.018 19 N -0.369 5.369 20 C 0.288 3.712 21 O -0.456 6.456 22 H 0.068 0.932 23 H 0.124 0.876 24 H 0.114 0.886 25 H 0.131 0.869 26 H 0.114 0.886 27 H -0.005 1.005 28 H 0.005 0.995 29 H 0.071 0.929 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.140 0.860 33 H 0.112 0.888 34 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -9.710 -21.721 4.999 24.312 hybrid contribution 0.299 0.727 -0.676 1.037 sum -9.411 -20.994 4.322 23.409 Atomic orbital electron populations 1.22114 0.76782 1.05775 1.02593 1.47710 1.08388 1.03805 1.73534 1.21510 0.87747 0.86701 0.73781 1.90628 1.16606 1.87879 1.51383 1.21646 0.99311 0.89714 1.04595 1.18708 0.93700 0.92516 0.94656 1.21693 0.94010 0.91469 1.50871 0.90501 1.26154 0.95720 1.03999 0.94554 1.70186 1.08382 1.27823 1.51451 0.85291 0.78579 0.77550 0.78635 1.19375 1.21290 1.17995 1.21856 0.99556 0.84380 0.95639 0.87605 1.23099 1.05416 0.92707 0.95947 1.22384 1.05032 0.96804 0.77618 1.46106 1.69078 1.09453 1.12265 1.21341 0.75727 0.84812 0.89362 1.90739 1.53842 1.76571 1.24419 0.93219 0.87598 0.88642 0.86880 0.88637 1.00518 0.99473 0.92850 0.87187 0.87327 0.85955 0.88832 0.73811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 9.54 127.77 1.22 2.66 16 2 N -0.60 -18.30 2.85 -822.63 -2.34 -20.65 16 3 C 0.51 21.47 7.67 87.66 0.67 22.15 16 4 O -0.59 -30.34 15.34 -3.04 -0.05 -30.38 16 5 C -0.11 -4.81 4.19 29.85 0.13 -4.68 16 6 C 0.04 2.41 4.26 29.85 0.13 2.54 16 7 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 8 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 9 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 10 N -0.94 -60.62 13.29 21.45 0.28 -60.34 16 11 Si 0.98 44.91 29.54 68.60 2.03 46.94 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 13 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 15 C 0.09 2.43 3.34 44.98 0.15 2.58 16 16 H 0.11 3.39 6.98 -2.39 -0.02 3.37 16 17 C -0.13 -1.66 6.70 31.65 0.21 -1.45 16 18 C 0.10 0.74 7.78 86.83 0.68 1.42 16 19 N -0.71 -10.54 6.24 -459.81 -2.87 -13.41 16 20 C 0.50 13.55 7.55 87.90 0.66 14.21 16 21 O -0.58 -22.07 18.02 -3.03 -0.05 -22.12 16 22 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.11 1.37 6.21 -2.39 -0.01 1.36 16 24 H 0.10 1.80 6.44 -2.39 -0.02 1.78 16 25 H 0.11 4.03 7.40 -2.39 -0.02 4.01 16 26 H 0.10 3.77 8.11 -2.39 -0.02 3.75 16 27 H -0.02 -1.56 8.10 -2.39 -0.02 -1.58 16 28 H -0.01 -0.84 8.10 -2.39 -0.02 -0.86 16 29 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.11 1.00 6.14 -2.39 -0.01 0.99 16 32 H 0.12 0.05 8.14 -2.38 -0.02 0.03 16 33 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.42 4.68 8.96 -92.71 -0.83 3.85 16 Total: -1.00 -88.84 287.27 1.82 -87.02 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 0.28 Total: 4.77 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 4.54 Total: 8.17 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -4.93 Total: -94.39 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.10 Total: -52.51 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -88.84 1.82 -87.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360402822.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.488 kcal (2) G-P(sol) polarization free energy of solvation -88.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds