Wall clock time and date at job start Sun Mar 29 2020 22:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37096 * 120.00267 * 2 1 4 4 H 1.07996 * 120.00438 * 204.41896 * 3 2 1 5 5 C 1.38955 * 119.99724 * 24.41974 * 3 2 1 6 6 N 1.31417 * 119.99951 * 12.62024 * 5 3 2 7 7 Si 1.86800 * 120.00191 * 192.62060 * 5 3 2 8 8 H 1.48503 * 109.47062 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.46979 * 119.99976 * 7 5 3 10 10 H 1.48501 * 109.47053 * 240.00279 * 7 5 3 11 11 C 1.34776 * 120.00208 * 180.02562 * 2 1 3 12 12 O 1.21295 * 120.00407 * 180.02562 * 11 2 1 13 13 C 1.50708 * 119.99901 * 0.27109 * 11 2 1 14 14 C 1.53001 * 109.47051 * 179.73013 * 13 11 2 15 15 H 1.08998 * 109.29833 * 304.58501 * 14 13 11 16 16 C 1.52916 * 109.29966 * 184.99944 * 14 13 11 17 17 C 1.53344 * 108.67744 * 188.93316 * 16 14 13 18 18 C 1.53068 * 108.42338 * 67.52869 * 17 16 14 19 19 C 1.50174 * 109.89585 * 311.10476 * 18 17 16 20 20 O 1.21285 * 118.25002 * 197.60638 * 19 18 17 21 21 N 1.33362 * 123.50680 * 17.57480 * 19 18 17 22 22 H 1.09001 * 109.46967 * 265.83019 * 1 2 3 23 23 H 1.09000 * 109.46929 * 25.83342 * 1 2 3 24 24 H 1.09007 * 109.46959 * 145.83113 * 1 2 3 25 25 H 0.96993 * 119.99915 * 179.97438 * 6 5 3 26 26 H 1.09005 * 109.46883 * 299.72708 * 13 11 2 27 27 H 1.08994 * 109.46738 * 59.73061 * 13 11 2 28 28 H 1.09000 * 109.60682 * 308.69071 * 16 14 13 29 29 H 1.08998 * 109.60571 * 69.01182 * 16 14 13 30 30 H 1.08998 * 109.67638 * 187.26491 * 17 16 14 31 31 H 1.09008 * 109.67061 * 307.76499 * 17 16 14 32 32 H 1.09002 * 109.39896 * 71.23118 * 18 17 16 33 33 H 1.09006 * 109.40310 * 190.97182 * 18 17 16 34 34 H 0.96998 * 117.94220 * 177.77804 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1580 1.2291 -0.3866 5 6 1.5490 2.3368 0.4975 6 7 0.4348 2.2488 1.1887 7 14 2.3241 4.0072 0.1838 8 1 3.5651 3.8352 -0.6134 9 1 1.3690 4.8633 -0.5646 10 1 2.6546 4.6509 1.4806 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1672 -0.0001 13 6 1.3854 -2.4723 -0.0073 14 6 2.3797 -3.6352 -0.0133 15 1 3.0577 -3.5252 -0.8596 16 6 1.6154 -4.9530 -0.1459 17 6 2.5943 -6.1127 0.0738 18 6 3.0480 -6.0925 1.5356 19 6 3.4786 -4.7055 1.9179 20 8 4.1604 -4.5696 2.9117 21 7 3.1518 -3.6153 1.2228 22 1 -0.3633 -0.0747 1.0250 23 1 -0.3633 0.9250 -0.4478 24 1 -0.3633 -0.8503 -0.5772 25 1 0.0151 3.0512 1.5363 26 1 0.7588 -2.5347 0.8825 27 1 0.7588 -2.5254 -0.8975 28 1 0.8252 -4.9945 0.6037 29 1 1.1785 -5.0238 -1.1419 30 1 2.0976 -7.0584 -0.1433 31 1 3.4578 -5.9930 -0.5806 32 1 2.2224 -6.4045 2.1752 33 1 3.8842 -6.7798 1.6648 34 1 3.4462 -2.7553 1.5612 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362696682.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:19 Heat of formation + Delta-G solvation = -79.892383 kcal Electronic energy + Delta-G solvation = -17594.379070 eV Core-core repulsion = 14719.860323 eV Total energy + Delta-G solvation = -2874.518746 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.13901 -38.46113 -36.40297 -34.74391 -32.91427 -31.79898 -30.75648 -27.67274 -26.18975 -24.52696 -23.06066 -22.06558 -18.93911 -18.90733 -16.96475 -16.88138 -16.13138 -15.70478 -15.18101 -14.89662 -14.25345 -14.10917 -13.90628 -13.58156 -13.49285 -12.83035 -12.29668 -12.10761 -11.63801 -11.42324 -11.35435 -11.22450 -11.03555 -10.99812 -10.94577 -10.87469 -10.34439 -10.30978 -9.45902 -9.06333 -8.64242 -8.46624 -7.72384 -6.37712 -3.94213 2.96736 3.12281 3.23549 3.30163 3.69125 3.81281 4.08912 4.55237 4.66382 4.75476 4.87775 5.00797 5.07340 5.35242 5.42615 5.47895 5.67670 5.70641 5.76890 5.83345 5.93774 5.98356 6.06278 6.30922 6.36165 6.78020 7.12923 7.25233 7.52543 7.82930 8.08957 8.41813 8.60438 9.12846 9.36382 9.90444 10.67213 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.041577 B = 0.005801 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.281309 B = 4825.225642 C = 5112.222338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.443 5.443 3 C -0.308 4.308 4 H 0.099 0.901 5 C 0.031 3.969 6 N -0.881 5.881 7 Si 0.926 3.074 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.440 3.560 12 O -0.590 6.590 13 C -0.145 4.145 14 C 0.159 3.841 15 H 0.081 0.919 16 C -0.134 4.134 17 C -0.122 4.122 18 C -0.135 4.135 19 C 0.512 3.488 20 O -0.573 6.573 21 N -0.698 5.698 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.026 0.974 25 H 0.268 0.732 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 -12.566 -4.401 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.161 5.161 3 C -0.436 4.436 4 H 0.117 0.883 5 C -0.173 4.173 6 N -0.520 5.520 7 Si 0.753 3.247 8 H -0.192 1.192 9 H -0.206 1.206 10 H -0.207 1.207 11 C 0.228 3.772 12 O -0.476 6.476 13 C -0.186 4.186 14 C 0.053 3.947 15 H 0.098 0.902 16 C -0.172 4.172 17 C -0.160 4.160 18 C -0.175 4.175 19 C 0.298 3.702 20 O -0.453 6.453 21 N -0.352 5.352 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.045 0.955 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.984 -12.523 -3.899 13.451 hybrid contribution 0.026 1.338 0.021 1.338 sum -2.957 -11.186 -3.878 12.203 Atomic orbital electron populations 1.21500 0.81255 0.99966 1.00643 1.43606 1.05486 1.04878 1.62094 1.19704 1.00658 0.84132 1.39091 0.88327 1.25368 0.96586 1.00250 0.95055 1.69995 1.19231 1.29640 1.33164 0.85862 0.79188 0.81387 0.78280 1.19196 1.20643 1.20697 1.20052 0.88120 0.84877 0.84105 1.90520 1.13811 1.87029 1.56252 1.21998 0.98853 0.93969 1.03809 1.20682 0.92583 0.93763 0.87659 0.90156 1.21978 0.98310 0.93555 1.03322 1.21646 0.99769 0.98904 0.95681 1.21632 1.03392 0.94530 0.97901 1.20133 0.79771 0.87207 0.83062 1.90732 1.39859 1.87128 1.27595 1.45741 1.54030 1.10309 1.25107 0.92956 0.90683 0.95515 0.92235 0.89664 0.88999 0.90865 0.89797 0.90710 0.91062 0.88614 0.88620 0.74865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.35 8.45 59.85 0.51 2.85 16 2 N -0.44 -10.93 3.01 -122.19 -0.37 -11.30 16 3 C -0.31 -8.44 9.24 -14.93 -0.14 -8.57 16 4 H 0.10 2.84 7.45 -52.49 -0.39 2.45 16 5 C 0.03 0.81 5.04 -17.46 -0.09 0.72 16 6 N -0.88 -23.28 10.83 55.50 0.60 -22.68 16 7 Si 0.93 20.63 29.57 -169.99 -5.03 15.60 16 8 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 C 0.44 10.02 7.27 -10.98 -0.08 9.94 16 12 O -0.59 -15.31 14.20 5.54 0.08 -15.23 16 13 C -0.15 -2.36 3.96 -27.88 -0.11 -2.47 16 14 C 0.16 2.33 2.65 -68.38 -0.18 2.15 16 15 H 0.08 1.25 7.96 -51.93 -0.41 0.84 16 16 C -0.13 -1.36 5.30 -26.60 -0.14 -1.50 16 17 C -0.12 -1.14 6.03 -26.52 -0.16 -1.30 16 18 C -0.13 -1.55 6.03 -28.10 -0.17 -1.72 16 19 C 0.51 8.68 7.71 -11.87 -0.09 8.58 16 20 O -0.57 -12.21 17.78 5.55 0.10 -12.11 16 21 N -0.70 -12.23 5.00 -54.86 -0.27 -12.51 16 22 H 0.05 1.15 7.83 -51.93 -0.41 0.75 16 23 H 0.07 1.71 6.80 -51.93 -0.35 1.35 16 24 H 0.03 0.45 6.60 -51.93 -0.34 0.11 16 25 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 26 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 27 H 0.09 1.25 7.40 -51.93 -0.38 0.86 16 28 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.68 8.13 -51.92 -0.42 0.26 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.41 8.63 6.84 -40.82 -0.28 8.35 16 LS Contribution 279.52 15.07 4.21 4.21 Total: -1.00 -32.45 279.52 -5.99 -38.45 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.66 Total: 6.89 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -0.65 Total: 8.68 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.04 Total: -46.49 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: 0.18 Total: -27.34 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.45 -5.99 -38.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362696682.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.446 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds