Wall clock time and date at job start Sun Mar 29 2020 22:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37096 * 120.00267 * 2 1 4 4 H 1.07996 * 120.00438 * 204.41896 * 3 2 1 5 5 C 1.38955 * 119.99724 * 24.41974 * 3 2 1 6 6 N 1.31417 * 119.99951 * 12.62024 * 5 3 2 7 7 Si 1.86800 * 120.00191 * 192.62060 * 5 3 2 8 8 H 1.48503 * 109.47062 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.46979 * 119.99976 * 7 5 3 10 10 H 1.48501 * 109.47053 * 240.00279 * 7 5 3 11 11 C 1.34776 * 120.00208 * 180.02562 * 2 1 3 12 12 O 1.21295 * 120.00407 * 180.02562 * 11 2 1 13 13 C 1.50708 * 119.99901 * 0.27109 * 11 2 1 14 14 C 1.53001 * 109.47051 * 179.73013 * 13 11 2 15 15 H 1.08998 * 109.29833 * 304.58501 * 14 13 11 16 16 C 1.52916 * 109.29966 * 184.99944 * 14 13 11 17 17 C 1.53344 * 108.67744 * 188.93316 * 16 14 13 18 18 C 1.53068 * 108.42338 * 67.52869 * 17 16 14 19 19 C 1.50174 * 109.89585 * 311.10476 * 18 17 16 20 20 O 1.21285 * 118.25002 * 197.60638 * 19 18 17 21 21 N 1.33362 * 123.50680 * 17.57480 * 19 18 17 22 22 H 1.09001 * 109.46967 * 265.83019 * 1 2 3 23 23 H 1.09000 * 109.46929 * 25.83342 * 1 2 3 24 24 H 1.09007 * 109.46959 * 145.83113 * 1 2 3 25 25 H 0.96993 * 119.99915 * 179.97438 * 6 5 3 26 26 H 1.09005 * 109.46883 * 299.72708 * 13 11 2 27 27 H 1.08994 * 109.46738 * 59.73061 * 13 11 2 28 28 H 1.09000 * 109.60682 * 308.69071 * 16 14 13 29 29 H 1.08998 * 109.60571 * 69.01182 * 16 14 13 30 30 H 1.08998 * 109.67638 * 187.26491 * 17 16 14 31 31 H 1.09008 * 109.67061 * 307.76499 * 17 16 14 32 32 H 1.09002 * 109.39896 * 71.23118 * 18 17 16 33 33 H 1.09006 * 109.40310 * 190.97182 * 18 17 16 34 34 H 0.96998 * 117.94220 * 177.77804 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1580 1.2291 -0.3866 5 6 1.5490 2.3368 0.4975 6 7 0.4348 2.2488 1.1887 7 14 2.3241 4.0072 0.1838 8 1 3.5651 3.8352 -0.6134 9 1 1.3690 4.8633 -0.5646 10 1 2.6546 4.6509 1.4806 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1672 -0.0001 13 6 1.3854 -2.4723 -0.0073 14 6 2.3797 -3.6352 -0.0133 15 1 3.0577 -3.5252 -0.8596 16 6 1.6154 -4.9530 -0.1459 17 6 2.5943 -6.1127 0.0738 18 6 3.0480 -6.0925 1.5356 19 6 3.4786 -4.7055 1.9179 20 8 4.1604 -4.5696 2.9117 21 7 3.1518 -3.6153 1.2228 22 1 -0.3633 -0.0747 1.0250 23 1 -0.3633 0.9250 -0.4478 24 1 -0.3633 -0.8503 -0.5772 25 1 0.0151 3.0512 1.5363 26 1 0.7588 -2.5347 0.8825 27 1 0.7588 -2.5254 -0.8975 28 1 0.8252 -4.9945 0.6037 29 1 1.1785 -5.0238 -1.1419 30 1 2.0976 -7.0584 -0.1433 31 1 3.4578 -5.9930 -0.5806 32 1 2.2224 -6.4045 2.1752 33 1 3.8842 -6.7798 1.6648 34 1 3.4462 -2.7553 1.5612 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362696682.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:19 Heat of formation + Delta-G solvation = -103.778848 kcal Electronic energy + Delta-G solvation = -17595.414865 eV Core-core repulsion = 14719.860323 eV Total energy + Delta-G solvation = -2875.554541 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.44282 -40.18186 -37.74614 -36.58745 -33.99370 -33.70085 -32.14590 -28.99763 -27.87460 -26.24637 -24.21008 -23.27327 -20.64495 -19.95280 -18.87955 -18.24115 -17.68029 -17.17074 -16.67115 -16.37527 -15.90949 -15.84929 -15.13831 -14.81842 -14.42944 -14.12446 -13.84545 -13.71275 -13.31115 -13.12732 -12.88858 -12.68327 -12.47343 -12.28049 -12.16751 -12.09114 -11.82780 -11.75153 -11.02635 -10.76663 -10.30395 -10.01859 -9.66241 -8.36226 -6.00716 1.33805 1.39283 1.52568 1.66994 2.03330 2.26388 2.43784 3.06130 3.08376 3.66427 3.77914 3.84324 4.00400 4.20139 4.31403 4.40775 4.53148 4.73414 4.75799 4.81355 4.94983 5.03361 5.06597 5.15387 5.16398 5.38789 5.42700 5.43727 5.77011 6.09833 6.46761 6.56784 7.15894 7.24267 7.48739 8.03268 8.66776 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.041577 B = 0.005801 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.281309 B = 4825.225642 C = 5112.222338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.464 5.464 3 C -0.343 4.343 4 H 0.069 0.931 5 C -0.003 4.003 6 N -0.897 5.897 7 Si 0.986 3.014 8 H -0.275 1.275 9 H -0.263 1.263 10 H -0.279 1.279 11 C 0.432 3.568 12 O -0.631 6.631 13 C -0.132 4.132 14 C 0.155 3.845 15 H 0.067 0.933 16 C -0.125 4.125 17 C -0.116 4.116 18 C -0.126 4.126 19 C 0.502 3.498 20 O -0.629 6.629 21 N -0.708 5.708 22 H 0.039 0.961 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.272 0.728 26 H 0.096 0.904 27 H 0.131 0.869 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.593 -14.458 -5.568 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.183 5.183 3 C -0.471 4.471 4 H 0.087 0.913 5 C -0.205 4.205 6 N -0.536 5.536 7 Si 0.810 3.190 8 H -0.199 1.199 9 H -0.188 1.188 10 H -0.205 1.205 11 C 0.222 3.778 12 O -0.519 6.519 13 C -0.172 4.172 14 C 0.050 3.950 15 H 0.085 0.915 16 C -0.162 4.162 17 C -0.153 4.153 18 C -0.166 4.166 19 C 0.291 3.709 20 O -0.514 6.514 21 N -0.357 5.357 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.115 0.885 27 H 0.149 0.851 28 H 0.104 0.896 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.123 0.877 34 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.938 -14.445 -5.102 16.096 hybrid contribution 0.666 1.921 0.397 2.072 sum -4.271 -12.524 -4.705 14.044 Atomic orbital electron populations 1.21460 0.79307 1.01096 1.00513 1.43895 1.06823 1.04763 1.62821 1.19613 1.00313 0.86367 1.40812 0.91303 1.26061 0.97057 1.02933 0.94446 1.70062 1.19777 1.30634 1.33141 0.84979 0.78376 0.77529 0.78074 1.19920 1.18802 1.20518 1.21249 0.88110 0.86582 0.81863 1.90492 1.16103 1.88006 1.57334 1.22007 0.98886 0.90282 1.06046 1.20930 0.92230 0.96022 0.85784 0.91540 1.22017 0.98045 0.90513 1.05674 1.21677 0.99745 1.00374 0.93520 1.21700 1.04487 0.90264 1.00110 1.21257 0.78573 0.89055 0.81973 1.90694 1.42443 1.88099 1.30118 1.46025 1.54167 1.09481 1.26008 0.94226 0.92684 0.90535 0.91783 0.88548 0.85087 0.89602 0.86560 0.86751 0.91543 0.86367 0.87667 0.77769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.96 8.45 127.77 1.08 6.04 16 2 N -0.46 -23.22 3.01 -658.87 -1.98 -25.20 16 3 C -0.34 -19.42 9.24 84.04 0.78 -18.65 16 4 H 0.07 4.20 7.45 -2.91 -0.02 4.18 16 5 C 0.00 -0.18 5.04 84.93 0.43 0.25 16 6 N -0.90 -47.71 10.83 21.67 0.23 -47.47 16 7 Si 0.99 42.88 29.57 68.60 2.03 44.91 16 8 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 9 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 C 0.43 19.82 7.27 87.66 0.64 20.45 16 12 O -0.63 -34.06 14.20 -3.08 -0.04 -34.11 16 13 C -0.13 -3.98 3.96 29.85 0.12 -3.86 16 14 C 0.16 4.25 2.65 45.10 0.12 4.37 16 15 H 0.07 2.01 7.96 -2.39 -0.02 1.99 16 16 C -0.12 -1.95 5.30 30.68 0.16 -1.79 16 17 C -0.12 -1.63 6.03 30.73 0.19 -1.44 16 18 C -0.13 -2.53 6.03 29.71 0.18 -2.35 16 19 C 0.50 16.90 7.71 87.71 0.68 17.57 16 20 O -0.63 -27.66 17.78 -3.04 -0.05 -27.72 16 21 N -0.71 -24.89 5.00 -446.64 -2.23 -27.13 16 22 H 0.04 1.72 7.83 -2.39 -0.02 1.70 16 23 H 0.05 2.48 6.80 -2.39 -0.02 2.47 16 24 H 0.08 2.35 6.60 -2.38 -0.02 2.34 16 25 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 26 H 0.10 2.76 8.11 -2.38 -0.02 2.74 16 27 H 0.13 2.96 7.40 -2.39 -0.02 2.94 16 28 H 0.09 1.20 8.11 -2.39 -0.02 1.18 16 29 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.03 8.13 -2.38 -0.02 1.01 16 32 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.39 17.01 6.84 -92.71 -0.63 16.38 16 Total: -1.00 -76.05 279.52 2.78 -73.26 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.47 Total: 22.85 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 4.36 Total: 20.60 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -3.98 Total: -99.80 kcal Atomic # 8 Polarization: -61.72 SS G_CDS: -0.10 Total: -61.82 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -76.05 2.78 -73.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362696682.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.516 kcal (2) G-P(sol) polarization free energy of solvation -76.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds