Wall clock time and date at job start Sun Mar 29 2020 22:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37096 * 120.00008 * 2 1 4 4 H 1.08006 * 120.00397 * 203.94707 * 3 2 1 5 5 C 1.38951 * 120.00264 * 23.94531 * 3 2 1 6 6 N 1.31412 * 119.99643 * 11.57419 * 5 3 2 7 7 Si 1.86801 * 120.00460 * 191.57166 * 5 3 2 8 8 H 1.48503 * 109.46594 * 90.00054 * 7 5 3 9 9 H 1.48498 * 109.47301 * 209.99856 * 7 5 3 10 10 H 1.48495 * 109.46880 * 330.00258 * 7 5 3 11 11 C 1.34771 * 120.00154 * 180.02562 * 2 1 3 12 12 O 1.21294 * 120.00212 * 179.97438 * 11 2 1 13 13 C 1.50699 * 119.99952 * 359.97438 * 11 2 1 14 14 H 1.08994 * 109.70323 * 59.48595 * 13 11 2 15 15 C 1.53345 * 109.67519 * 180.02562 * 13 11 2 16 16 C 1.52922 * 108.67639 * 187.26602 * 15 13 11 17 17 N 1.45763 * 110.48194 * 309.24213 * 16 15 13 18 18 C 1.46497 * 117.94113 * 199.07210 * 17 16 15 19 19 C 1.33347 * 124.10722 * 19.05538 * 17 16 15 20 20 O 1.21282 * 118.24240 * 177.51100 * 19 17 16 21 21 C 1.50171 * 123.51148 * 357.79606 * 19 17 16 22 22 H 1.09004 * 109.46683 * 270.13429 * 1 2 3 23 23 H 1.09000 * 109.46706 * 30.13272 * 1 2 3 24 24 H 1.08997 * 109.46959 * 150.13293 * 1 2 3 25 25 H 0.96998 * 120.00099 * 179.97438 * 6 5 3 26 26 H 1.09003 * 109.60572 * 67.50390 * 15 13 11 27 27 H 1.09000 * 109.73889 * 307.09953 * 15 13 11 28 28 H 1.08995 * 109.30221 * 188.93531 * 16 15 13 29 29 H 1.08995 * 109.13574 * 69.45057 * 16 15 13 30 30 H 1.09005 * 109.46975 * 179.97438 * 18 17 16 31 31 H 1.09001 * 109.47849 * 299.97929 * 18 17 16 32 32 H 1.09000 * 109.47345 * 59.98884 * 18 17 16 33 33 H 1.08992 * 109.40755 * 137.71065 * 21 19 17 34 34 H 1.09000 * 109.40024 * 257.45389 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1609 1.2276 -0.3796 5 6 1.5455 2.3389 0.4884 6 7 0.4156 2.2556 1.1543 7 14 2.3382 4.0054 0.1985 8 1 1.8332 4.5788 -1.0749 9 1 1.9989 4.9168 1.3207 10 1 3.8123 3.8452 0.1192 11 6 2.1389 -1.1671 -0.0005 12 8 3.3519 -1.1671 -0.0010 13 6 1.3854 -2.4722 -0.0005 14 1 0.7502 -2.5298 -0.8843 15 6 2.3778 -3.6413 -0.0005 16 6 1.5991 -4.9446 -0.1837 17 7 0.4987 -5.0196 0.7692 18 6 -0.0852 -6.3353 1.0415 19 6 -0.0096 -3.9657 1.4089 20 8 -0.9564 -4.1434 2.1457 21 6 0.5236 -2.5697 1.2610 22 1 -0.3633 0.0024 1.0277 23 1 -0.3633 0.8888 -0.5159 24 1 -0.3633 -0.8912 -0.5118 25 1 -0.0066 3.0595 1.4956 26 1 2.9140 -3.6659 0.9482 27 1 3.0878 -3.5215 -0.8188 28 1 2.2693 -5.7898 -0.0273 29 1 1.2010 -4.9834 -1.1977 30 1 -0.8907 -6.2319 1.7686 31 1 -0.4818 -6.7553 0.1171 32 1 0.6824 -6.9977 1.4416 33 1 -0.3088 -1.8701 1.1856 34 1 1.1280 -2.3187 2.1327 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407961988.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:16 Heat of formation + Delta-G solvation = -82.398354 kcal Electronic energy + Delta-G solvation = -17891.264731 eV Core-core repulsion = 15016.637318 eV Total energy + Delta-G solvation = -2874.627413 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.77844 -40.25467 -37.45132 -36.63227 -35.09589 -33.49501 -30.74348 -28.67047 -27.96654 -26.59753 -25.27786 -23.72358 -20.65993 -19.67425 -18.91809 -18.09581 -17.47375 -17.42577 -16.88290 -16.27455 -15.93044 -15.80734 -15.19260 -14.93561 -14.47962 -14.27761 -13.62718 -13.56481 -13.26140 -13.14103 -13.09151 -12.77753 -12.60189 -12.53702 -12.35377 -12.15448 -11.89160 -11.84039 -11.11453 -10.97856 -10.20910 -9.71839 -9.68330 -8.33245 -5.99797 1.37638 1.41710 1.52124 1.53886 1.96657 2.06816 2.27576 2.99499 3.08212 3.52061 3.71469 3.80263 3.82857 4.21569 4.27250 4.40635 4.53963 4.57696 4.66011 4.69710 4.79292 4.85802 4.98856 5.01384 5.09044 5.27925 5.37011 5.44432 5.45298 6.10001 6.36718 6.46853 7.07191 7.16052 7.46628 8.01516 8.68963 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.044774 B = 0.006441 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.214944 B = 4345.785622 C = 4810.622684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.460 5.460 3 C -0.344 4.344 4 H 0.074 0.926 5 C -0.003 4.003 6 N -0.898 5.898 7 Si 0.990 3.010 8 H -0.265 1.265 9 H -0.276 1.276 10 H -0.275 1.275 11 C 0.444 3.556 12 O -0.626 6.626 13 C -0.089 4.089 14 H 0.112 0.888 15 C -0.108 4.108 16 C 0.119 3.881 17 N -0.604 5.604 18 C 0.067 3.933 19 C 0.524 3.476 20 O -0.596 6.596 21 C -0.125 4.125 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.273 0.727 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.809 -13.267 -4.208 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.178 5.178 3 C -0.472 4.472 4 H 0.092 0.908 5 C -0.205 4.205 6 N -0.536 5.536 7 Si 0.814 3.186 8 H -0.190 1.190 9 H -0.201 1.201 10 H -0.200 1.200 11 C 0.233 3.767 12 O -0.514 6.514 13 C -0.110 4.110 14 H 0.130 0.870 15 C -0.146 4.146 16 C -0.002 4.002 17 N -0.336 5.336 18 C -0.075 4.075 19 C 0.313 3.687 20 O -0.478 6.478 21 C -0.165 4.165 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.129 0.871 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.124 0.876 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.850 -13.201 -3.764 13.851 hybrid contribution 0.309 1.305 0.222 1.359 sum -1.541 -11.897 -3.541 12.508 Atomic orbital electron populations 1.21552 0.79732 1.00105 1.00887 1.43829 1.06529 1.04828 1.62631 1.19633 1.00146 0.86044 1.41411 0.90813 1.26111 0.96995 1.03008 0.94379 1.70064 1.18895 1.30673 1.34009 0.84979 0.78308 0.77036 0.78309 1.19009 1.20112 1.19960 1.20794 0.87814 0.85900 0.82165 1.90477 1.15786 1.87882 1.57239 1.21218 0.97660 0.92977 0.99169 0.87024 1.21633 0.97118 0.91820 1.04074 1.21659 0.87556 0.98252 0.92744 1.47365 1.35277 1.07986 1.42956 1.21931 1.00046 0.82476 1.03065 1.20018 0.82296 0.87259 0.79167 1.90653 1.30065 1.86085 1.40984 1.21729 1.01428 0.94229 0.99114 0.93435 0.92814 0.91604 0.91735 0.92167 0.88753 0.87123 0.88964 0.91322 0.89681 0.89971 0.87572 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.29 7.07 127.77 0.90 6.19 16 2 N -0.46 -23.40 3.01 -658.88 -1.99 -25.38 16 3 C -0.34 -19.43 9.25 84.04 0.78 -18.65 16 4 H 0.07 4.42 7.43 -2.91 -0.02 4.40 16 5 C 0.00 -0.17 5.09 84.93 0.43 0.27 16 6 N -0.90 -47.95 10.72 21.66 0.23 -47.71 16 7 Si 0.99 42.47 29.57 68.60 2.03 44.50 16 8 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 9 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 C 0.44 20.88 7.00 87.66 0.61 21.49 16 12 O -0.63 -34.00 15.61 -3.07 -0.05 -34.05 16 13 C -0.09 -2.98 1.77 -11.40 -0.02 -3.00 16 14 H 0.11 3.24 7.37 -2.39 -0.02 3.22 16 15 C -0.11 -2.94 4.70 30.68 0.14 -2.80 16 16 C 0.12 2.19 6.40 86.49 0.55 2.74 16 17 N -0.60 -14.39 3.21 -851.62 -2.73 -17.13 16 18 C 0.07 1.22 10.47 127.77 1.34 2.55 16 19 C 0.52 16.86 7.47 87.71 0.66 17.51 16 20 O -0.60 -23.12 15.95 -3.03 -0.05 -23.16 16 21 C -0.12 -4.31 4.87 29.71 0.14 -4.17 16 22 H 0.05 2.20 6.71 -2.38 -0.02 2.18 16 23 H 0.05 2.51 7.03 -2.39 -0.02 2.49 16 24 H 0.07 2.33 5.91 -2.39 -0.01 2.31 16 25 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 26 H 0.06 1.82 8.12 -2.39 -0.02 1.80 16 27 H 0.09 2.58 7.90 -2.39 -0.02 2.56 16 28 H 0.11 1.39 8.10 -2.39 -0.02 1.37 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.60 6.59 -2.38 -0.02 1.59 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.11 3.83 5.06 -2.39 -0.01 3.81 16 34 H 0.08 3.20 8.09 -2.39 -0.02 3.18 16 Total: -1.00 -71.55 274.55 4.09 -67.46 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 1.10 Total: 13.34 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 5.54 Total: 22.14 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -4.49 Total: -90.22 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -0.10 Total: -57.21 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -71.55 4.09 -67.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407961988.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.941 kcal (2) G-P(sol) polarization free energy of solvation -71.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds