Wall clock time and date at job start Sun Mar 29 2020 22:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 119.99798 * 2 1 4 4 N 1.34771 * 120.00386 * 180.02562 * 2 1 3 5 5 C 1.47184 * 125.73488 * 0.05874 * 4 2 1 6 6 C 1.54326 * 107.29538 * 179.03943 * 5 4 2 7 7 C 1.55161 * 102.93854 * 337.71358 * 6 5 4 8 8 C 1.47426 * 125.65199 * 180.02562 * 4 2 1 9 9 H 1.08998 * 110.36779 * 85.14318 * 8 4 2 10 10 C 1.50704 * 110.36376 * 322.93667 * 8 4 2 11 11 O 1.21295 * 119.99823 * 342.93856 * 10 8 4 12 12 N 1.34771 * 120.00080 * 162.93703 * 10 8 4 13 13 C 1.46502 * 120.00168 * 359.97438 * 12 10 8 14 14 C 1.37102 * 120.00105 * 179.97438 * 12 10 8 15 15 H 1.07992 * 120.00168 * 331.28862 * 14 12 10 16 16 C 1.38956 * 119.99758 * 151.28473 * 14 12 10 17 17 N 1.31406 * 120.00483 * 350.03991 * 16 14 12 18 18 Si 1.86804 * 119.99597 * 170.03371 * 16 14 12 19 19 H 1.48500 * 109.46958 * 90.00292 * 18 16 14 20 20 H 1.48496 * 109.46785 * 209.99988 * 18 16 14 21 21 H 1.48498 * 109.47171 * 330.00054 * 18 16 14 22 22 H 1.09007 * 109.46481 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47369 * 299.99179 * 1 2 3 24 24 H 1.08995 * 109.47258 * 60.00096 * 1 2 3 25 25 H 1.08999 * 109.94487 * 59.57501 * 5 4 2 26 26 H 1.09002 * 109.92622 * 298.49271 * 5 4 2 27 27 H 1.09001 * 110.71997 * 219.35764 * 6 5 4 28 28 H 1.08995 * 110.72308 * 96.07452 * 6 5 4 29 29 H 1.08995 * 111.00506 * 277.42591 * 7 6 5 30 30 H 1.09004 * 111.03241 * 153.59315 * 7 6 5 31 31 H 1.08995 * 109.47531 * 264.22409 * 13 12 10 32 32 H 1.09002 * 109.47194 * 144.22528 * 13 12 10 33 33 H 1.08998 * 109.46924 * 24.22292 * 13 12 10 34 34 H 0.96995 * 120.00847 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.5762 -2.5089 -0.0023 6 6 2.7308 -3.5326 -0.0270 7 6 3.9106 -2.7114 -0.6111 8 6 3.6480 -1.3122 -0.0001 9 1 4.0337 -1.2641 1.0183 10 6 4.2812 -0.2413 -0.8506 11 8 3.6084 0.3753 -1.6497 12 7 5.5949 0.0313 -0.7234 13 6 6.4074 -0.7129 0.2421 14 6 6.1710 1.0052 -1.4976 15 1 5.7677 1.2275 -2.4744 16 6 7.2738 1.7064 -1.0252 17 7 7.6453 1.5794 0.2288 18 14 8.2283 2.8293 -2.1730 19 1 7.6496 4.1960 -2.1227 20 1 9.6504 2.8779 -1.7484 21 1 8.1435 2.3067 -3.5604 22 1 -0.3632 -1.0278 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 0.9511 -2.6339 -0.8865 26 1 0.9770 -2.6476 0.8976 27 1 2.4871 -4.3732 -0.6767 28 1 2.9624 -3.8771 0.9808 29 1 3.8625 -2.6782 -1.6995 30 1 4.8683 -3.1102 -0.2765 31 1 6.4782 -0.1464 1.1706 32 1 7.4061 -0.8675 -0.1662 33 1 5.9423 -1.6786 0.4403 34 1 8.4149 2.0691 0.5587 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408151743.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:54 Heat of formation + Delta-G solvation = -78.202255 kcal Electronic energy + Delta-G solvation = -18192.445067 eV Core-core repulsion = 15317.999610 eV Total energy + Delta-G solvation = -2874.445457 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.48382 -39.55177 -38.06598 -36.52481 -33.75783 -32.87650 -30.90588 -29.70716 -28.04024 -26.49774 -24.53933 -22.51229 -21.57907 -19.49228 -18.91898 -18.38158 -17.79037 -16.91407 -16.36690 -16.15082 -15.72603 -15.53998 -15.28831 -14.39158 -14.31190 -14.04804 -13.54722 -13.40862 -13.31195 -13.17581 -13.09960 -12.81172 -12.76718 -12.57425 -12.37715 -12.13015 -11.97515 -11.63864 -11.04369 -10.74382 -10.33233 -9.58512 -9.47588 -8.30286 -6.01807 1.33729 1.35295 1.48521 1.79459 1.98090 2.23915 2.28874 3.03893 3.13361 3.58452 3.68574 3.98953 4.00954 4.23575 4.25171 4.45863 4.51391 4.61725 4.63751 4.80886 4.90866 4.92988 4.98463 5.00427 5.14183 5.31100 5.36505 5.41215 5.43222 6.12371 6.52265 6.69477 7.19647 7.42248 7.49781 8.10583 8.71328 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.033221 B = 0.007804 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.628754 B = 3587.271456 C = 4073.227394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.500 3.500 3 O -0.586 6.586 4 N -0.614 5.614 5 C 0.092 3.908 6 C -0.113 4.113 7 C -0.118 4.118 8 C 0.119 3.881 9 H 0.087 0.913 10 C 0.445 3.555 11 O -0.609 6.609 12 N -0.472 5.472 13 C 0.120 3.880 14 C -0.339 4.339 15 H 0.060 0.940 16 C -0.007 4.007 17 N -0.902 5.902 18 Si 0.990 3.010 19 H -0.283 1.283 20 H -0.261 1.261 21 H -0.268 1.268 22 H 0.112 0.888 23 H 0.104 0.896 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.782 -14.801 3.428 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.291 3.709 3 O -0.465 6.465 4 N -0.350 5.350 5 C -0.028 4.028 6 C -0.151 4.151 7 C -0.156 4.156 8 C 0.011 3.989 9 H 0.104 0.896 10 C 0.233 3.767 11 O -0.494 6.494 12 N -0.193 5.193 13 C -0.023 4.023 14 C -0.467 4.467 15 H 0.078 0.922 16 C -0.208 4.208 17 N -0.541 5.541 18 Si 0.813 3.187 19 H -0.209 1.209 20 H -0.185 1.185 21 H -0.192 1.192 22 H 0.130 0.870 23 H 0.122 0.878 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.121 0.879 27 H 0.132 0.868 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.125 0.875 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.689 -13.812 3.172 17.167 hybrid contribution 0.837 1.303 -0.528 1.637 sum -8.851 -12.509 2.644 15.550 Atomic orbital electron populations 1.21815 0.87174 1.06400 1.05381 1.21563 0.92318 0.81968 0.75085 1.90803 1.71940 1.33270 1.50496 1.48620 1.05231 1.07475 1.73630 1.22458 0.97250 0.79372 1.03745 1.22698 0.91564 0.97016 1.03773 1.22788 1.01986 0.90536 1.00308 1.21815 0.82823 0.95679 0.98539 0.89555 1.21074 0.81988 0.86989 0.86627 1.90477 1.62314 1.54955 1.41609 1.43705 1.06621 1.32966 1.35963 1.21486 0.94681 0.93695 0.92453 1.19457 1.12593 1.15727 0.98968 0.92163 1.26168 0.98824 0.98187 0.97622 1.70029 1.27102 1.42745 1.14259 0.85012 0.77671 0.77725 0.78315 1.20882 1.18505 1.19222 0.86950 0.87755 0.89226 0.90108 0.87947 0.86770 0.87910 0.92155 0.87537 0.94019 0.93304 0.90575 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 10.22 71.24 0.73 -2.95 16 2 C 0.50 20.20 7.21 87.66 0.63 20.83 16 3 O -0.59 -32.89 14.54 19.78 0.29 -32.60 16 4 N -0.61 -21.20 3.14 -791.82 -2.49 -23.68 16 5 C 0.09 1.78 5.82 86.70 0.50 2.28 16 6 C -0.11 -1.77 6.95 31.79 0.22 -1.55 16 7 C -0.12 -3.17 6.15 31.99 0.20 -2.97 16 8 C 0.12 4.63 2.57 44.73 0.11 4.74 16 9 H 0.09 3.26 7.20 -2.39 -0.02 3.25 16 10 C 0.44 24.39 5.99 87.66 0.53 24.92 16 11 O -0.61 -39.18 13.66 19.75 0.27 -38.91 16 12 N -0.47 -26.86 3.00 -658.89 -1.98 -28.83 16 13 C 0.12 5.62 8.36 127.77 1.07 6.69 16 14 C -0.34 -21.30 9.15 84.04 0.77 -20.53 16 15 H 0.06 4.05 7.52 -2.91 -0.02 4.03 16 16 C -0.01 -0.42 5.17 84.93 0.44 0.02 16 17 N -0.90 -52.22 10.90 21.66 0.24 -51.98 16 18 Si 0.99 46.33 29.56 68.60 2.03 48.36 16 19 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 20 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H 0.11 1.77 6.62 -2.38 -0.02 1.75 16 23 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.08 1.34 8.03 -2.39 -0.02 1.32 16 26 H 0.10 1.30 8.09 -2.39 -0.02 1.28 16 27 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.86 8.05 -2.39 -0.02 1.84 16 30 H 0.11 2.44 6.86 -2.38 -0.02 2.42 16 31 H 0.04 2.11 7.20 -2.39 -0.02 2.10 16 32 H 0.05 2.33 7.68 -2.39 -0.02 2.31 16 33 H 0.08 2.73 4.86 -2.39 -0.01 2.72 16 34 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -91.91 276.69 4.65 -87.26 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 1.10 Total: 8.91 kcal Atomic # 6 Polarization: 26.28 SS G_CDS: 5.20 Total: 31.48 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -4.23 Total: -104.50 kcal Atomic # 8 Polarization: -72.07 SS G_CDS: 0.56 Total: -71.51 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -91.91 4.65 -87.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408151743.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.056 kcal (2) G-P(sol) polarization free energy of solvation -91.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds