Wall clock time and date at job start Sun Mar 29 2020 22:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00293 * 2 1 4 4 C 1.34779 * 119.99779 * 180.02562 * 2 1 3 5 5 O 1.21275 * 120.00115 * 359.97438 * 4 2 1 6 6 C 1.50704 * 119.99733 * 179.97438 * 4 2 1 7 7 H 1.08991 * 110.00124 * 319.64152 * 6 4 2 8 8 C 1.54329 * 109.87878 * 80.73591 * 6 4 2 9 9 C 1.55159 * 102.94107 * 141.60580 * 8 6 4 10 10 C 1.55132 * 101.48684 * 324.33430 * 9 8 6 11 11 N 1.47020 * 109.88220 * 198.54003 * 6 4 2 12 12 C 1.34777 * 125.64483 * 61.60718 * 11 6 4 13 13 O 1.21693 * 120.00018 * 0.02562 * 12 11 6 14 14 C 1.46374 * 120.00143 * 179.97438 * 12 11 6 15 15 H 1.08001 * 119.99606 * 0.02562 * 14 12 11 16 16 C 1.40050 * 120.00083 * 180.02562 * 14 12 11 17 17 N 1.30674 * 120.00155 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 120.00031 * 180.27793 * 16 14 12 19 19 H 1.48497 * 109.47322 * 179.72813 * 18 16 14 20 20 H 1.48498 * 109.47165 * 299.72761 * 18 16 14 21 21 H 1.48501 * 109.47099 * 59.72586 * 18 16 14 22 22 H 1.09001 * 109.46956 * 270.00005 * 1 2 3 23 23 H 1.09000 * 109.47089 * 29.99603 * 1 2 3 24 24 H 1.08994 * 109.47433 * 149.99589 * 1 2 3 25 25 H 1.08999 * 109.47518 * 270.00649 * 3 2 1 26 26 H 1.09001 * 109.46450 * 30.00359 * 3 2 1 27 27 H 1.09001 * 109.46889 * 150.00189 * 3 2 1 28 28 H 1.08993 * 110.72300 * 259.97158 * 8 6 4 29 29 H 1.09002 * 110.72052 * 23.24507 * 8 6 4 30 30 H 1.09005 * 111.00089 * 82.57304 * 9 8 6 31 31 H 1.08996 * 111.00737 * 206.38229 * 9 8 6 32 32 H 1.09001 * 110.49739 * 278.45195 * 10 9 8 33 33 H 1.09000 * 110.34355 * 156.05515 * 10 9 8 34 34 H 0.97005 * 120.00029 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2175 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 1 4.0184 -0.3867 -0.6643 8 6 4.1712 -0.9339 1.4311 9 6 5.4039 -1.8731 1.5064 10 6 4.9259 -3.0791 0.6557 11 7 4.1457 -2.4779 -0.4412 12 6 3.9226 -3.0395 -1.6459 13 8 3.2562 -2.4516 -2.4773 14 6 4.4827 -4.3561 -1.9547 15 1 5.0744 -4.8777 -1.2170 16 6 4.2513 -4.9394 -3.2068 17 7 3.5358 -4.3081 -4.0995 18 14 4.9596 -6.6231 -3.5981 19 1 4.5682 -7.0169 -4.9753 20 1 6.4405 -6.5721 -3.4998 21 1 4.4333 -7.6187 -2.6301 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8899 -0.5139 25 1 2.3792 1.5835 -1.0276 26 1 1.6085 2.0283 0.5139 27 1 3.1500 1.1383 0.5138 28 1 4.4693 0.1055 1.5680 29 1 3.4217 -1.2215 2.1685 30 1 6.2816 -1.4019 1.0639 31 1 5.6023 -2.1758 2.5345 32 1 4.2963 -3.7404 1.2510 33 1 5.7814 -3.6250 0.2579 34 1 3.3758 -4.7120 -4.9669 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408229365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:15 Heat of formation + Delta-G solvation = -58.533797 kcal Electronic energy + Delta-G solvation = -18081.951491 eV Core-core repulsion = 15208.358923 eV Total energy + Delta-G solvation = -2873.592569 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.79276 -37.53112 -35.53545 -34.97314 -32.42213 -30.46504 -29.55496 -27.45922 -26.08163 -25.59012 -22.70820 -20.93641 -20.05479 -18.19623 -16.95976 -16.60839 -15.57579 -15.35396 -15.14825 -14.73320 -14.17459 -13.40257 -13.18064 -12.79256 -12.66026 -12.48373 -12.38031 -12.18630 -11.93135 -11.68903 -11.55190 -11.09596 -11.06931 -10.76353 -10.75447 -10.53215 -10.22213 -10.09749 -9.16606 -8.77024 -8.27492 -7.56862 -7.18510 -6.12742 -4.56537 3.20212 3.23666 3.25562 3.28108 3.44491 4.13381 4.58427 4.63512 4.91455 4.98223 5.13546 5.21416 5.36972 5.46214 5.63736 5.70012 5.74876 5.80463 5.87019 5.93021 5.99802 6.09291 6.11843 6.37157 6.48422 6.67520 6.85802 7.32738 7.50178 7.78625 8.15559 8.43407 8.85614 9.08617 9.54310 10.65361 10.84338 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.028960 B = 0.008135 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.613458 B = 3441.056321 C = 4058.570953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.633 5.633 3 C 0.082 3.918 4 C 0.511 3.489 5 O -0.514 6.514 6 C 0.130 3.870 7 H 0.078 0.922 8 C -0.120 4.120 9 C -0.133 4.133 10 C 0.117 3.883 11 N -0.624 5.624 12 C 0.578 3.422 13 O -0.570 6.570 14 C -0.536 4.536 15 H 0.069 0.931 16 C 0.087 3.913 17 N -0.768 5.768 18 Si 0.909 3.091 19 H -0.281 1.281 20 H -0.268 1.268 21 H -0.268 1.268 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 9.114 10.708 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.370 5.370 3 C -0.062 4.062 4 C 0.298 3.702 5 O -0.387 6.387 6 C 0.020 3.980 7 H 0.096 0.904 8 C -0.158 4.158 9 C -0.171 4.171 10 C -0.007 4.007 11 N -0.364 5.364 12 C 0.385 3.615 13 O -0.451 6.451 14 C -0.573 4.573 15 H 0.087 0.913 16 C -0.133 4.133 17 N -0.397 5.397 18 Si 0.733 3.267 19 H -0.206 1.206 20 H -0.193 1.193 21 H -0.192 1.192 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.702 8.790 9.932 13.281 hybrid contribution 0.206 -0.663 -0.198 0.721 sum 0.909 8.128 9.734 12.714 Atomic orbital electron populations 1.21500 0.80157 1.02836 1.00808 1.47794 1.06536 1.06454 1.76208 1.21765 0.97160 0.85505 1.01770 1.21381 0.90959 0.82883 0.74986 1.90669 1.69873 1.31010 1.47108 1.21147 0.89679 0.91220 0.95921 0.90393 1.22561 0.98279 1.00164 0.94793 1.22847 0.97198 0.96807 1.00223 1.21985 0.95423 0.94584 0.88719 1.48687 1.55611 1.17064 1.15040 1.18000 0.79958 0.86148 0.77386 1.90602 1.43294 1.64781 1.46461 1.20806 1.34876 1.01427 1.00143 0.91291 1.25724 0.93521 0.98366 0.95684 1.70022 1.28802 1.36336 1.04518 0.86417 0.79816 0.82543 0.77875 1.20570 1.19264 1.19243 0.93539 0.91906 0.90732 0.92810 0.91559 0.91029 0.90366 0.90967 0.90761 0.90654 0.93251 0.90723 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.35 10.44 59.85 0.62 1.97 16 2 N -0.63 -10.85 3.27 -189.52 -0.62 -11.47 16 3 C 0.08 0.99 9.92 59.85 0.59 1.58 16 4 C 0.51 11.22 6.11 -10.98 -0.07 11.15 16 5 O -0.51 -13.84 15.71 5.56 0.09 -13.75 16 6 C 0.13 2.61 2.34 -68.10 -0.16 2.45 16 7 H 0.08 1.55 7.26 -51.93 -0.38 1.17 16 8 C -0.12 -1.72 5.83 -24.89 -0.15 -1.86 16 9 C -0.13 -1.85 7.10 -24.46 -0.17 -2.02 16 10 C 0.12 2.26 6.54 -2.41 -0.02 2.24 16 11 N -0.62 -15.24 2.75 -165.83 -0.46 -15.69 16 12 C 0.58 17.56 7.18 -12.99 -0.09 17.47 16 13 O -0.57 -19.47 14.83 5.20 0.08 -19.40 16 14 C -0.54 -15.92 8.99 -35.63 -0.32 -16.24 16 15 H 0.07 1.87 6.64 -52.49 -0.35 1.52 16 16 C 0.09 2.52 5.50 -17.36 -0.10 2.43 16 17 N -0.77 -24.01 11.83 55.55 0.66 -23.36 16 18 Si 0.91 20.95 29.56 -169.99 -5.02 15.92 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 24 H 0.07 1.34 7.42 -51.93 -0.39 0.95 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 27 H 0.07 0.77 5.16 -51.93 -0.27 0.50 16 28 H 0.08 0.85 7.12 -51.93 -0.37 0.48 16 29 H 0.07 1.04 7.84 -51.93 -0.41 0.63 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.42 7.13 -51.93 -0.37 1.05 16 34 H 0.27 7.61 8.29 -40.82 -0.34 7.27 16 LS Contribution 282.94 15.07 4.26 4.26 Total: -1.00 -39.88 282.94 -5.48 -45.36 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -4.61 Total: -1.05 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 0.15 Total: 19.17 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.42 Total: -50.52 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: 0.16 Total: -33.15 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -39.88 -5.48 -45.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408229365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.172 kcal (2) G-P(sol) polarization free energy of solvation -39.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds