Wall clock time and date at job start Sun Mar 29 2020 22:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00218 * 2 1 4 4 H 1.48499 * 109.47309 * 270.00045 * 3 2 1 5 5 H 1.48497 * 109.47137 * 30.00396 * 3 2 1 6 6 H 1.48506 * 109.46691 * 149.99877 * 3 2 1 7 7 C 1.37875 * 119.99505 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99664 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00086 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47071 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47314 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46993 * 54.99312 * 11 10 9 13 13 N 1.46906 * 109.46958 * 295.00019 * 11 10 9 14 14 C 1.50697 * 109.47319 * 175.00069 * 11 10 9 15 15 O 1.21280 * 120.00036 * 99.99600 * 14 11 10 16 16 N 1.34776 * 119.99978 * 279.99616 * 14 11 10 17 17 C 1.46498 * 120.00147 * 179.97438 * 16 14 11 18 18 C 1.54263 * 110.03377 * 272.91178 * 17 16 14 19 19 C 1.54968 * 104.15900 * 217.13516 * 18 17 16 20 20 C 1.54889 * 102.77800 * 37.88670 * 19 18 17 21 21 C 1.53879 * 110.03045 * 155.69272 * 17 16 14 22 22 H 0.97004 * 119.99580 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47369 * 60.00186 * 9 7 2 24 24 H 1.08998 * 109.47172 * 299.99461 * 9 7 2 25 25 H 1.09002 * 109.47343 * 59.99482 * 10 9 7 26 26 H 1.09008 * 109.47223 * 300.00033 * 10 9 7 27 27 H 1.00896 * 111.00309 * 176.04353 * 13 11 10 28 28 H 1.00902 * 110.99923 * 300.00516 * 13 11 10 29 29 H 0.97004 * 120.00065 * 0.02562 * 16 14 11 30 30 H 1.09002 * 110.01448 * 34.30247 * 17 16 14 31 31 H 1.08988 * 110.48834 * 335.78327 * 18 17 16 32 32 H 1.08999 * 110.48338 * 98.42999 * 18 17 16 33 33 H 1.09001 * 110.71934 * 279.57471 * 19 18 17 34 34 H 1.08997 * 110.92173 * 156.30019 * 19 18 17 35 35 H 1.08997 * 110.48633 * 203.40778 * 20 19 18 36 36 H 1.09004 * 110.59579 * 80.81266 * 20 19 18 37 37 H 1.09005 * 110.02817 * 238.57187 * 21 17 16 38 38 H 1.08999 * 110.03491 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2508 -2.4991 -0.0017 10 6 2.2450 -3.6622 -0.0027 11 6 1.4800 -4.9871 -0.0046 12 1 0.7881 -5.0060 -0.8466 13 7 0.7278 -5.1200 1.2503 14 6 2.4546 -6.1298 -0.1294 15 8 2.7861 -6.7544 0.8559 16 7 2.9578 -6.4575 -1.3360 17 6 3.9056 -7.5679 -1.4573 18 6 5.3438 -7.0636 -1.2184 19 6 6.2022 -7.8777 -2.2194 20 6 5.2880 -7.9593 -3.4672 21 6 3.8701 -8.1375 -2.8863 22 1 -0.4850 0.8401 -0.0004 23 1 0.6245 -2.5563 -0.8920 24 1 0.6239 -2.5575 0.8880 25 1 2.8718 -3.6052 0.8872 26 1 2.8718 -3.6037 -0.8927 27 1 0.1634 -5.9563 1.2468 28 1 1.3474 -5.1051 2.0466 29 1 2.6930 -5.9576 -2.1240 30 1 3.6595 -8.3489 -0.7378 31 1 5.4150 -5.9977 -1.4340 32 1 5.6545 -7.2683 -0.1939 33 1 6.4110 -8.8732 -1.8278 34 1 7.1290 -7.3539 -2.4532 35 1 5.5586 -8.8171 -4.0828 36 1 5.3493 -7.0392 -4.0483 37 1 3.6074 -9.1952 -2.8602 38 1 3.1479 -7.5875 -3.4897 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424083293.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:21 Heat of formation + Delta-G solvation = -91.584327 kcal Electronic energy + Delta-G solvation = -17284.623276 eV Core-core repulsion = 14545.430623 eV Total energy + Delta-G solvation = -2739.192653 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.20101 -38.87603 -36.74494 -34.81382 -34.64386 -31.92547 -29.67157 -29.18563 -27.67544 -25.25194 -22.47934 -21.66872 -21.31870 -21.05932 -18.68840 -18.12869 -17.46289 -16.96921 -16.46578 -16.22910 -15.76575 -15.70954 -14.99951 -14.63619 -14.28995 -14.26397 -13.81678 -13.47327 -13.07369 -12.79376 -12.55040 -12.46971 -12.25641 -12.03825 -11.97395 -11.82858 -11.73303 -11.61785 -11.48302 -11.24525 -10.97914 -10.48628 -10.07719 -9.61152 -8.13611 -6.23930 1.41782 1.43379 1.51846 1.54587 2.22331 2.45069 3.19489 3.54107 3.60950 3.69102 3.88737 3.99313 4.11768 4.32400 4.43758 4.50494 4.53095 4.61508 4.76428 4.78102 4.88279 4.94149 5.02591 5.13580 5.21208 5.25549 5.26261 5.44188 5.56999 5.59724 5.84660 5.98792 6.10222 6.30703 6.47005 6.55246 6.94644 7.17937 7.44267 8.97673 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027515 B = 0.004904 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.375076 B = 5708.313098 C = 6310.231894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.080 4.080 11 C 0.085 3.915 12 H 0.111 0.889 13 N -0.819 5.819 14 C 0.488 3.512 15 O -0.584 6.584 16 N -0.711 5.711 17 C 0.133 3.867 18 C -0.138 4.138 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.125 4.125 22 H 0.262 0.738 23 H -0.005 1.005 24 H 0.005 0.995 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.346 0.654 28 H 0.344 0.656 29 H 0.413 0.587 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.047 -16.790 -8.175 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.119 4.119 11 C -0.031 4.031 12 H 0.128 0.872 13 N -0.348 5.348 14 C 0.273 3.727 15 O -0.465 6.465 16 N -0.363 5.363 17 C 0.029 3.971 18 C -0.177 4.177 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.163 4.163 22 H 0.071 0.929 23 H 0.013 0.987 24 H 0.024 0.976 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.159 0.841 28 H 0.158 0.842 29 H 0.250 0.750 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.763 -16.443 -7.689 20.156 hybrid contribution 0.542 0.371 0.164 0.677 sum 9.305 -16.072 -7.524 20.038 Atomic orbital electron populations 1.70108 1.07638 1.27515 1.51745 1.25892 0.95687 1.03000 0.94944 0.85536 0.78594 0.78929 0.78498 1.19571 1.20919 1.19187 1.21728 0.93320 0.92763 1.50409 0.92706 1.18832 0.93881 0.91331 0.95780 1.21375 0.97692 0.92170 1.00652 1.21642 0.93783 0.92147 0.95522 0.87170 1.58977 1.27248 1.45270 1.03310 1.22365 0.81810 0.85225 0.83286 1.90625 1.62377 1.55128 1.38355 1.46298 1.45593 1.34725 1.09643 1.21753 0.88273 0.88326 0.98772 1.22792 0.94966 1.00370 0.99593 1.22476 0.98092 1.00130 0.94983 1.22357 0.93343 1.02881 0.97144 1.22426 0.98889 1.02039 0.92951 0.92919 0.98672 0.97636 0.94148 0.91487 0.84063 0.84228 0.75028 0.91257 0.91949 0.93120 0.90749 0.90666 0.89733 0.91103 0.89790 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.54 -31.06 9.11 25.60 0.23 -30.82 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.04 2.04 4.86 29.85 0.15 2.18 16 10 C -0.08 -3.27 4.78 30.60 0.15 -3.13 16 11 C 0.08 2.84 3.15 44.17 0.14 2.98 16 12 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 13 N -0.82 -28.26 8.44 -171.80 -1.45 -29.71 16 14 C 0.49 15.19 7.06 87.66 0.62 15.81 16 15 O -0.58 -21.76 15.92 -3.03 -0.05 -21.81 16 16 N -0.71 -16.96 5.04 -439.11 -2.21 -19.18 16 17 C 0.13 2.84 3.23 45.72 0.15 2.99 16 18 C -0.14 -2.99 6.54 31.70 0.21 -2.78 16 19 C -0.12 -1.80 6.91 31.91 0.22 -1.58 16 20 C -0.12 -1.50 6.83 31.67 0.22 -1.28 16 21 C -0.13 -1.79 6.57 31.32 0.21 -1.58 16 22 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 23 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 24 H 0.01 0.30 7.75 -2.39 -0.02 0.28 16 25 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.07 2.50 8.14 -2.38 -0.02 2.49 16 27 H 0.35 10.25 9.06 -89.70 -0.81 9.43 16 28 H 0.34 12.23 8.58 -89.69 -0.77 11.46 16 29 H 0.41 8.06 8.31 -92.71 -0.77 7.29 16 30 H 0.07 1.74 7.59 -2.39 -0.02 1.72 16 31 H 0.06 1.47 8.05 -2.39 -0.02 1.45 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.08 1.04 7.61 -2.39 -0.02 1.03 16 Total: -1.00 -68.97 312.46 0.05 -68.93 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: -1.29 Total: 28.37 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: 2.74 Total: -16.59 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -3.38 Total: -105.44 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.05 Total: -21.81 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -68.97 0.05 -68.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424083293.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.657 kcal (2) G-P(sol) polarization free energy of solvation -68.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds