Wall clock time and date at job start Sun Mar 29 2020 22:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99836 * 2 1 4 4 H 1.48505 * 109.47003 * 269.99797 * 3 2 1 5 5 H 1.48496 * 109.47204 * 29.99779 * 3 2 1 6 6 H 1.48497 * 109.47266 * 149.99920 * 3 2 1 7 7 C 1.37878 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99778 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46992 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47521 * 54.99725 * 11 10 9 13 13 N 1.46905 * 109.47006 * 294.99423 * 11 10 9 14 14 C 1.50705 * 109.47172 * 174.99859 * 11 10 9 15 15 O 1.21281 * 120.00071 * 99.99505 * 14 11 10 16 16 N 1.34777 * 119.99937 * 280.00010 * 14 11 10 17 17 C 1.46497 * 120.00242 * 179.97438 * 16 14 11 18 18 C 1.52990 * 109.47171 * 179.97438 * 17 16 14 19 19 C 1.53786 * 113.61464 * 174.99989 * 18 17 16 20 20 C 1.53781 * 87.17350 * 140.02626 * 19 18 17 21 21 C 1.53781 * 87.08070 * 334.52830 * 20 19 18 22 22 H 0.96999 * 120.00006 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47539 * 59.99304 * 9 7 2 24 24 H 1.09004 * 109.46495 * 299.99507 * 9 7 2 25 25 H 1.08997 * 109.47124 * 59.99325 * 10 9 7 26 26 H 1.08997 * 109.46832 * 299.99476 * 10 9 7 27 27 H 1.00900 * 111.00072 * 300.00344 * 13 11 10 28 28 H 1.00896 * 110.99963 * 63.95340 * 13 11 10 29 29 H 0.97003 * 119.99582 * 359.97438 * 16 14 11 30 30 H 1.09007 * 109.46596 * 59.99839 * 17 16 14 31 31 H 1.08994 * 109.47005 * 300.00149 * 17 16 14 32 32 H 1.09000 * 112.90908 * 43.75361 * 18 17 16 33 33 H 1.09002 * 113.61357 * 25.43543 * 19 18 17 34 34 H 1.09002 * 113.61608 * 254.61705 * 19 18 17 35 35 H 1.08999 * 113.61567 * 89.07405 * 20 19 18 36 36 H 1.08998 * 113.61196 * 219.97759 * 20 19 18 37 37 H 1.09005 * 113.61471 * 139.98321 * 21 20 19 38 38 H 1.08996 * 113.61178 * 270.79663 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0025 12 1 0.7886 -5.0076 -0.8396 13 7 0.7282 -5.1175 1.2576 14 6 2.4551 -6.1299 -0.1201 15 8 2.7865 -6.7527 0.8664 16 7 2.9584 -6.4599 -1.3261 17 6 3.9063 -7.5705 -1.4452 18 6 4.3190 -7.7338 -2.9093 19 6 5.4080 -8.7975 -3.1274 20 6 4.6399 -9.2150 -4.3925 21 6 3.3793 -8.6470 -3.7193 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8895 24 1 0.6242 -2.5566 0.8904 25 1 2.8714 -3.6038 0.8922 26 1 2.8726 -3.6047 -0.8877 27 1 1.3477 -5.1012 2.0538 28 1 0.0234 -4.3995 1.3331 29 1 2.6930 -5.9619 -2.1151 30 1 3.4351 -8.4893 -1.0962 31 1 4.7884 -7.3618 -0.8398 32 1 4.5328 -6.7835 -3.3985 33 1 5.4282 -9.5665 -2.3551 34 1 6.3930 -8.3783 -3.3330 35 1 4.9412 -8.6688 -5.2864 36 1 4.6047 -10.2935 -4.5460 37 1 2.7258 -8.1050 -4.4029 38 1 2.8440 -9.3753 -3.1101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424088081.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:08 Heat of formation + Delta-G solvation = -43.802582 kcal Electronic energy + Delta-G solvation = -16957.493171 eV Core-core repulsion = 14220.372491 eV Total energy + Delta-G solvation = -2737.120681 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.81755 -38.75003 -35.48609 -34.26149 -32.83754 -29.87873 -28.80820 -26.24719 -25.83238 -24.00086 -22.52373 -20.73044 -20.04103 -19.32687 -17.29979 -16.35314 -16.19305 -15.58576 -14.95690 -14.84252 -14.47454 -14.18557 -13.90768 -13.58050 -13.02706 -12.80558 -12.70257 -12.16968 -12.15512 -11.87268 -11.60388 -11.06987 -10.92637 -10.84887 -10.70041 -10.63008 -10.48102 -9.98007 -9.87619 -9.27158 -9.17775 -8.90120 -8.43938 -8.15893 -6.08487 -4.11606 2.99573 3.26909 3.32871 3.33920 3.37453 4.33496 4.39285 4.41028 4.47278 4.61018 5.03339 5.17085 5.22221 5.27659 5.28517 5.46859 5.49206 5.58162 5.61956 5.64836 5.73794 5.79267 5.84048 5.98932 6.22180 6.30378 6.53411 6.61143 6.88692 7.46618 7.52807 7.62520 7.76069 7.88711 7.93429 8.31475 8.52875 8.94432 9.53287 11.02422 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028595 B = 0.004334 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.973335 B = 6459.643805 C = 7021.386381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.074 3.926 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.524 3.476 15 O -0.541 6.541 16 N -0.734 5.734 17 C 0.131 3.869 18 C -0.125 4.125 19 C -0.132 4.132 20 C -0.143 4.143 21 C -0.137 4.137 22 H 0.262 0.738 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.345 0.655 28 H 0.354 0.646 29 H 0.401 0.599 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.948 -15.270 -7.863 18.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.041 4.041 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.311 3.689 15 O -0.417 6.417 16 N -0.387 5.387 17 C 0.007 3.993 18 C -0.144 4.144 19 C -0.170 4.170 20 C -0.180 4.180 21 C -0.174 4.174 22 H 0.071 0.929 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.169 0.831 29 H 0.235 0.765 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.800 -16.331 -7.404 19.177 hybrid contribution 0.733 2.227 -0.249 2.357 sum 7.533 -14.104 -7.653 17.727 Atomic orbital electron populations 1.69951 1.06018 1.26775 1.50475 1.25015 0.94871 0.99303 0.95135 0.86581 0.79869 0.83363 0.78138 1.20618 1.21141 1.19884 1.21189 0.93026 0.90919 1.51074 0.92727 1.19106 0.93735 0.91122 0.97361 1.22374 0.99854 0.94000 1.01456 1.21473 0.94690 0.92363 0.95546 0.88643 1.58744 1.18466 1.55853 1.03228 1.20898 0.81095 0.84425 0.82525 1.90627 1.60361 1.53603 1.37129 1.45998 1.47242 1.35367 1.10059 1.21288 0.92654 0.89937 0.95388 1.22874 0.97684 0.98840 0.94991 1.22873 0.97637 0.98305 0.98155 1.22807 0.96932 1.00952 0.97355 1.23050 0.96375 0.98923 0.99088 0.92883 0.96329 0.96384 0.92718 0.92572 0.84167 0.83110 0.76481 0.91679 0.91749 0.88471 0.89836 0.91259 0.90174 0.91457 0.91306 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 10 C -0.14 -2.72 4.78 -26.73 -0.13 -2.85 16 11 C 0.07 1.29 3.21 -68.86 -0.22 1.07 16 12 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 13 N -0.83 -14.68 8.94 -5.65 -0.05 -14.73 16 14 C 0.52 8.90 7.08 -10.98 -0.08 8.82 16 15 O -0.54 -10.91 16.25 5.56 0.09 -10.82 16 16 N -0.73 -9.66 5.56 -60.30 -0.33 -9.99 16 17 C 0.13 1.51 5.52 -4.05 -0.02 1.49 16 18 C -0.13 -1.09 3.76 -89.67 -0.34 -1.42 16 19 C -0.13 -1.00 7.63 -25.92 -0.20 -1.20 16 20 C -0.14 -1.00 8.08 -25.92 -0.21 -1.21 16 21 C -0.14 -1.09 7.64 -25.78 -0.20 -1.29 16 22 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 25 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.35 6.19 8.58 -39.29 -0.34 5.85 16 28 H 0.35 6.22 7.55 -39.29 -0.30 5.93 16 29 H 0.40 4.47 8.47 -40.82 -0.35 4.12 16 30 H 0.06 0.79 7.85 -51.93 -0.41 0.38 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.68 7.91 -51.93 -0.41 0.27 16 LS Contribution 314.70 15.07 4.74 4.74 Total: -1.00 -31.23 314.70 -8.12 -39.35 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.34 Total: 9.86 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -1.93 Total: -9.34 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.35 Total: -50.07 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.23 -8.12 -39.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424088081.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.456 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds