Wall clock time and date at job start Sun Mar 29 2020 22:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99915 * 2 1 4 4 H 1.48500 * 109.46814 * 239.99880 * 3 2 1 5 5 H 1.48499 * 109.47170 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46815 * 120.00371 * 3 2 1 7 7 C 1.37875 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00128 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46814 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47056 * 304.99857 * 11 10 9 13 13 N 1.46906 * 109.47053 * 65.00187 * 11 10 9 14 14 C 1.50701 * 109.46958 * 184.99800 * 11 10 9 15 15 O 1.21283 * 120.00021 * 260.00045 * 14 11 10 16 16 N 1.34780 * 120.00065 * 80.00293 * 14 11 10 17 17 C 1.46497 * 120.00113 * 180.02562 * 16 14 11 18 18 C 1.53000 * 109.46934 * 179.97438 * 17 16 14 19 19 C 1.53778 * 113.61541 * 274.13221 * 18 17 16 20 20 C 1.53952 * 87.02079 * 220.05064 * 19 18 17 21 21 C 1.53778 * 113.61254 * 176.52460 * 18 17 16 22 22 H 0.96996 * 119.99918 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47121 * 60.00666 * 9 7 2 24 24 H 1.08997 * 109.46988 * 299.99719 * 9 7 2 25 25 H 1.09003 * 109.46928 * 60.00244 * 10 9 7 26 26 H 1.09002 * 109.47110 * 300.00138 * 10 9 7 27 27 H 1.00904 * 110.99860 * 296.04605 * 13 11 10 28 28 H 1.00902 * 110.99567 * 59.99323 * 13 11 10 29 29 H 0.97001 * 119.99467 * 359.97438 * 16 14 11 30 30 H 1.09002 * 109.46526 * 299.99494 * 17 16 14 31 31 H 1.08992 * 109.47161 * 59.99529 * 17 16 14 32 32 H 1.09001 * 112.85181 * 45.33428 * 18 17 16 33 33 H 1.09004 * 113.61055 * 334.57242 * 19 18 17 34 34 H 1.09001 * 113.61290 * 105.46987 * 19 18 17 35 35 H 1.09002 * 113.53521 * 270.81226 * 20 19 18 36 36 H 1.08999 * 113.66527 * 139.93186 * 20 19 18 37 37 H 1.09007 * 113.61709 * 254.52773 * 21 18 17 38 38 H 1.09004 * 113.61791 * 25.34778 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 1 0.7884 -5.0068 0.8421 13 7 0.7280 -5.1189 -1.2549 14 6 2.4549 -6.1298 0.1239 15 8 2.7863 -6.7537 -0.8620 16 7 2.9582 -6.4586 1.3302 17 6 3.9061 -7.5691 1.4505 18 6 4.3196 -7.7303 2.9147 19 6 5.4946 -6.8274 3.3259 20 6 6.0246 -8.0232 4.1378 21 6 5.2520 -8.9276 3.1632 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8719 -3.6043 0.8895 26 1 2.8719 -3.6043 -0.8905 27 1 0.0232 -4.4008 -1.3311 28 1 1.3477 -5.1033 -2.0511 29 1 2.6933 -5.9594 2.1186 30 1 3.4348 -8.4883 1.1023 31 1 4.7881 -7.3611 0.8449 32 1 3.4738 -7.6858 3.6008 33 1 6.1395 -6.5442 2.4940 34 1 5.1979 -5.9778 3.9410 35 1 5.6456 -8.0579 5.1593 36 1 7.1063 -8.1448 4.0822 37 1 4.7599 -9.7713 3.6472 38 1 5.8295 -9.2207 2.2864 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424088082.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:10 Heat of formation + Delta-G solvation = -43.808620 kcal Electronic energy + Delta-G solvation = -17007.689708 eV Core-core repulsion = 14270.568766 eV Total energy + Delta-G solvation = -2737.120942 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.81863 -38.74318 -35.48424 -34.25519 -32.83596 -29.87753 -28.80059 -26.23939 -25.82295 -23.99550 -22.51799 -20.71440 -20.05872 -19.29837 -17.30770 -16.34628 -16.20071 -15.54108 -15.03215 -14.76728 -14.48612 -14.20809 -13.90109 -13.51393 -13.04137 -12.83405 -12.68036 -12.19362 -12.11998 -11.82287 -11.63310 -11.07217 -10.90990 -10.83129 -10.70951 -10.61263 -10.47243 -9.97611 -9.87442 -9.27935 -9.18014 -8.90140 -8.43458 -8.15817 -6.08158 -4.11360 2.99588 3.28559 3.32756 3.33463 3.36151 4.36006 4.39537 4.41719 4.48737 4.62860 5.03427 5.17612 5.21373 5.28056 5.29351 5.48603 5.51582 5.57810 5.62480 5.66834 5.76794 5.79649 5.84619 6.00721 6.23775 6.30569 6.53460 6.61070 6.88803 7.46616 7.52769 7.62693 7.76100 7.88861 7.93414 8.31649 8.52884 8.94411 9.53459 11.02752 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025002 B = 0.004675 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.657951 B = 5987.634086 C = 6837.127437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.074 3.926 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.524 3.476 15 O -0.541 6.541 16 N -0.733 5.733 17 C 0.131 3.869 18 C -0.125 4.125 19 C -0.138 4.138 20 C -0.143 4.143 21 C -0.131 4.131 22 H 0.262 0.738 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.354 0.646 28 H 0.345 0.655 29 H 0.401 0.599 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.962 -14.369 7.685 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.041 4.041 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.311 3.689 15 O -0.417 6.417 16 N -0.387 5.387 17 C 0.007 3.993 18 C -0.143 4.143 19 C -0.175 4.175 20 C -0.180 4.180 21 C -0.169 4.169 22 H 0.072 0.928 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.169 0.831 28 H 0.158 0.842 29 H 0.235 0.765 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.810 -15.427 7.231 18.742 hybrid contribution 0.716 2.203 0.241 2.329 sum 8.527 -13.224 7.472 17.419 Atomic orbital electron populations 1.69940 1.06019 1.26888 1.50388 1.25008 0.94866 0.99280 0.95121 0.86643 0.79596 0.83033 0.78661 1.20220 1.21202 1.20229 1.21150 0.92982 0.90927 1.51206 0.92785 1.19101 0.93729 0.91108 0.97350 1.22376 0.99853 0.93991 1.01455 1.21473 0.94691 0.92366 0.95546 0.88649 1.58748 1.18466 1.55844 1.03235 1.20899 0.81096 0.84426 0.82521 1.90627 1.60398 1.53521 1.37176 1.45992 1.47159 1.35406 1.10099 1.21293 0.92758 0.89876 0.95366 1.22819 0.97622 0.97843 0.96055 1.23038 0.97306 0.96949 1.00218 1.22839 1.00082 0.96700 0.98401 1.22868 0.97865 0.96401 0.99796 0.92825 0.96393 0.96338 0.92558 0.92729 0.83109 0.84169 0.76484 0.91752 0.91709 0.88603 0.89844 0.91169 0.90210 0.91436 0.91310 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 10 C -0.14 -2.71 4.78 -26.73 -0.13 -2.84 16 11 C 0.07 1.29 3.21 -68.86 -0.22 1.07 16 12 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 13 N -0.83 -14.69 8.94 -5.65 -0.05 -14.74 16 14 C 0.52 8.90 7.08 -10.98 -0.08 8.83 16 15 O -0.54 -10.92 16.25 5.55 0.09 -10.83 16 16 N -0.73 -9.66 5.56 -60.30 -0.33 -10.00 16 17 C 0.13 1.51 5.50 -4.04 -0.02 1.49 16 18 C -0.12 -1.08 3.75 -89.81 -0.34 -1.42 16 19 C -0.14 -1.18 7.65 -25.83 -0.20 -1.38 16 20 C -0.14 -1.04 8.09 -25.83 -0.21 -1.25 16 21 C -0.13 -0.99 7.65 -25.92 -0.20 -1.19 16 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.35 6.23 7.55 -39.29 -0.30 5.93 16 28 H 0.35 6.19 8.58 -39.29 -0.34 5.86 16 29 H 0.40 4.48 8.47 -40.82 -0.35 4.13 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.81 7.87 -51.93 -0.41 0.40 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -31.18 314.72 -8.12 -39.30 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.35 Total: 10.03 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.93 Total: -9.44 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.35 Total: -50.08 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.18 -8.12 -39.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424088082.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.510 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds