Wall clock time and date at job start Sun Mar 29 2020 22:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99915 * 2 1 4 4 H 1.48500 * 109.46814 * 239.99880 * 3 2 1 5 5 H 1.48499 * 109.47170 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46815 * 120.00371 * 3 2 1 7 7 C 1.37875 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00128 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46814 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47056 * 304.99857 * 11 10 9 13 13 N 1.46906 * 109.47053 * 65.00187 * 11 10 9 14 14 C 1.50701 * 109.46958 * 184.99800 * 11 10 9 15 15 O 1.21283 * 120.00021 * 260.00045 * 14 11 10 16 16 N 1.34780 * 120.00065 * 80.00293 * 14 11 10 17 17 C 1.46497 * 120.00113 * 180.02562 * 16 14 11 18 18 C 1.53000 * 109.46934 * 179.97438 * 17 16 14 19 19 C 1.53778 * 113.61541 * 274.13221 * 18 17 16 20 20 C 1.53952 * 87.02079 * 220.05064 * 19 18 17 21 21 C 1.53778 * 113.61254 * 176.52460 * 18 17 16 22 22 H 0.96996 * 119.99918 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47121 * 60.00666 * 9 7 2 24 24 H 1.08997 * 109.46988 * 299.99719 * 9 7 2 25 25 H 1.09003 * 109.46928 * 60.00244 * 10 9 7 26 26 H 1.09002 * 109.47110 * 300.00138 * 10 9 7 27 27 H 1.00904 * 110.99860 * 296.04605 * 13 11 10 28 28 H 1.00902 * 110.99567 * 59.99323 * 13 11 10 29 29 H 0.97001 * 119.99467 * 359.97438 * 16 14 11 30 30 H 1.09002 * 109.46526 * 299.99494 * 17 16 14 31 31 H 1.08992 * 109.47161 * 59.99529 * 17 16 14 32 32 H 1.09001 * 112.85181 * 45.33428 * 18 17 16 33 33 H 1.09004 * 113.61055 * 334.57242 * 19 18 17 34 34 H 1.09001 * 113.61290 * 105.46987 * 19 18 17 35 35 H 1.09002 * 113.53521 * 270.81226 * 20 19 18 36 36 H 1.08999 * 113.66527 * 139.93186 * 20 19 18 37 37 H 1.09007 * 113.61709 * 254.52773 * 21 18 17 38 38 H 1.09004 * 113.61791 * 25.34778 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 1 0.7884 -5.0068 0.8421 13 7 0.7280 -5.1189 -1.2549 14 6 2.4549 -6.1298 0.1239 15 8 2.7863 -6.7537 -0.8620 16 7 2.9582 -6.4586 1.3302 17 6 3.9061 -7.5691 1.4505 18 6 4.3196 -7.7303 2.9147 19 6 5.4946 -6.8274 3.3259 20 6 6.0246 -8.0232 4.1378 21 6 5.2520 -8.9276 3.1632 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8719 -3.6043 0.8895 26 1 2.8719 -3.6043 -0.8905 27 1 0.0232 -4.4008 -1.3311 28 1 1.3477 -5.1033 -2.0511 29 1 2.6933 -5.9594 2.1186 30 1 3.4348 -8.4883 1.1023 31 1 4.7881 -7.3611 0.8449 32 1 3.4738 -7.6858 3.6008 33 1 6.1395 -6.5442 2.4940 34 1 5.1979 -5.9778 3.9410 35 1 5.6456 -8.0579 5.1593 36 1 7.1063 -8.1448 4.0822 37 1 4.7599 -9.7713 3.6472 38 1 5.8295 -9.2207 2.2864 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424088082.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:10 Heat of formation + Delta-G solvation = -65.702426 kcal Electronic energy + Delta-G solvation = -17008.639095 eV Core-core repulsion = 14270.568766 eV Total energy + Delta-G solvation = -2738.070329 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.01698 -39.61267 -37.08336 -35.43748 -34.83110 -31.68403 -29.87087 -27.81892 -26.47758 -25.59864 -23.53347 -22.33432 -21.29106 -20.16912 -18.85614 -18.07851 -17.37955 -16.57138 -16.46074 -16.11181 -15.95134 -15.49049 -15.08500 -14.84031 -14.55226 -14.30680 -13.89913 -13.44318 -13.31652 -12.94667 -12.85943 -12.66713 -12.60534 -12.51682 -11.80774 -11.72846 -11.49756 -11.32343 -11.28291 -11.14463 -10.68316 -10.55442 -10.07243 -9.64158 -8.21144 -6.31688 1.40194 1.41725 1.49772 1.62362 2.17120 2.40430 3.12472 3.64082 3.70111 3.75862 3.80128 3.91955 4.00667 4.13259 4.25795 4.34195 4.52632 4.66097 4.72505 4.84592 4.88681 4.89719 4.99749 5.08742 5.12103 5.13617 5.31203 5.46332 5.48359 5.62996 5.65859 5.80731 6.07407 6.21435 6.47513 6.55706 6.83557 7.25012 7.37444 8.89481 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025002 B = 0.004675 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.657951 B = 5987.634086 C = 6837.127437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.030 3.970 10 C -0.120 4.120 11 C 0.081 3.919 12 H 0.110 0.890 13 N -0.831 5.831 14 C 0.524 3.476 15 O -0.576 6.576 16 N -0.717 5.717 17 C 0.131 3.869 18 C -0.120 4.120 19 C -0.143 4.143 20 C -0.136 4.136 21 C -0.129 4.129 22 H 0.264 0.736 23 H 0.002 0.998 24 H 0.003 0.997 25 H 0.066 0.934 26 H 0.042 0.958 27 H 0.353 0.647 28 H 0.343 0.657 29 H 0.413 0.587 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.941 -14.606 8.958 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.160 4.160 11 C -0.035 4.035 12 H 0.128 0.872 13 N -0.362 5.362 14 C 0.310 3.690 15 O -0.455 6.455 16 N -0.369 5.369 17 C 0.007 3.993 18 C -0.138 4.138 19 C -0.181 4.181 20 C -0.174 4.174 21 C -0.167 4.167 22 H 0.073 0.927 23 H 0.020 0.980 24 H 0.021 0.979 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.167 0.833 28 H 0.156 0.844 29 H 0.249 0.751 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.804 -15.674 8.547 19.905 hybrid contribution 0.406 2.248 -0.141 2.289 sum 9.209 -13.426 8.406 18.323 Atomic orbital electron populations 1.70053 1.07500 1.27847 1.51263 1.25860 0.95723 1.02957 0.94701 0.85597 0.78382 0.78628 0.79029 1.19673 1.20783 1.19179 1.21596 0.93346 0.92480 1.51020 0.92729 1.18970 0.94035 0.91985 0.95748 1.22127 0.98774 0.93740 1.01353 1.21419 0.94786 0.91339 0.95929 0.87220 1.58766 1.18411 1.55630 1.03388 1.20758 0.80957 0.84121 0.83138 1.90615 1.61611 1.54746 1.38544 1.45915 1.46307 1.35385 1.09332 1.21412 0.91721 0.88795 0.97353 1.22832 0.98157 0.98781 0.94042 1.23060 0.97248 0.97501 1.00251 1.22828 1.00422 0.95493 0.98633 1.22879 0.97493 0.96360 0.99936 0.92711 0.97963 0.97878 0.91519 0.93870 0.83251 0.84393 0.75071 0.92258 0.92774 0.87450 0.90798 0.91115 0.89201 0.90960 0.90220 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.35 13.29 21.45 0.28 -54.06 16 2 C 0.01 0.34 5.46 84.65 0.46 0.81 16 3 Si 0.96 43.27 29.54 68.60 2.03 45.29 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.55 -30.03 9.11 25.60 0.23 -29.80 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.03 1.46 4.74 29.85 0.14 1.60 16 10 C -0.12 -4.71 4.78 30.60 0.15 -4.56 16 11 C 0.08 2.73 3.21 44.17 0.14 2.88 16 12 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 13 N -0.83 -29.26 8.94 -171.79 -1.54 -30.80 16 14 C 0.52 17.36 7.08 87.66 0.62 17.98 16 15 O -0.58 -23.07 16.25 -3.04 -0.05 -23.12 16 16 N -0.72 -17.87 5.56 -463.07 -2.57 -20.45 16 17 C 0.13 2.85 5.50 86.38 0.47 3.33 16 18 C -0.12 -1.84 3.75 -10.27 -0.04 -1.87 16 19 C -0.14 -2.21 7.65 31.18 0.24 -1.97 16 20 C -0.14 -1.68 8.09 31.18 0.25 -1.42 16 21 C -0.13 -1.66 7.65 31.12 0.24 -1.43 16 22 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 23 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 24 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 25 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.35 12.50 7.55 -89.69 -0.68 11.82 16 28 H 0.34 12.38 8.58 -89.69 -0.77 11.61 16 29 H 0.41 8.38 8.47 -92.71 -0.79 7.59 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.32 7.87 -2.39 -0.02 1.30 16 32 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.28 7.92 -2.38 -0.02 1.26 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.08 1.10 8.10 -2.39 -0.02 1.08 16 Total: -1.00 -65.61 314.72 -0.11 -65.72 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -1.17 Total: 31.88 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 2.91 Total: -14.46 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -3.82 Total: -105.31 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.05 Total: -23.12 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -65.61 -0.11 -65.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424088082.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.015 kcal (2) G-P(sol) polarization free energy of solvation -65.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds