Wall clock time and date at job start Sun Mar 29 2020 22:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99926 * 2 1 4 4 H 1.48505 * 109.46851 * 270.00040 * 3 2 1 5 5 H 1.48495 * 109.47090 * 29.99619 * 3 2 1 6 6 H 1.48500 * 109.47181 * 149.99981 * 3 2 1 7 7 C 1.37876 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00047 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00023 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47397 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47443 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.46774 * 305.00131 * 11 10 9 13 13 N 1.46896 * 109.46999 * 64.99856 * 11 10 9 14 14 C 1.50701 * 109.47046 * 184.99881 * 11 10 9 15 15 O 1.21275 * 120.00194 * 260.00032 * 14 11 10 16 16 N 1.34775 * 119.99612 * 80.00309 * 14 11 10 17 17 C 1.46501 * 119.99789 * 179.97438 * 16 14 11 18 18 C 1.52995 * 109.47289 * 180.02562 * 17 16 14 19 19 C 1.53003 * 109.47289 * 180.02562 * 18 17 16 20 20 C 1.53001 * 117.51964 * 116.28130 * 19 18 17 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 18 22 22 H 0.96995 * 120.00232 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46834 * 59.99972 * 9 7 2 24 24 H 1.09000 * 109.47569 * 300.00036 * 9 7 2 25 25 H 1.09004 * 109.47124 * 60.00184 * 10 9 7 26 26 H 1.09004 * 109.46999 * 300.00072 * 10 9 7 27 27 H 1.00904 * 111.00676 * 296.05054 * 13 11 10 28 28 H 1.00911 * 110.99824 * 60.00364 * 13 11 10 29 29 H 0.96994 * 120.00505 * 359.97438 * 16 14 11 30 30 H 1.08999 * 109.47292 * 59.99462 * 17 16 14 31 31 H 1.09005 * 109.46856 * 299.99743 * 17 16 14 32 32 H 1.08999 * 109.47504 * 59.99456 * 18 17 16 33 33 H 1.09005 * 109.46851 * 299.99610 * 18 17 16 34 34 H 1.09002 * 115.54973 * 330.57913 * 19 18 17 35 35 H 1.09001 * 117.49733 * 214.97413 * 20 19 18 36 36 H 1.08995 * 117.49577 * 359.97438 * 20 19 18 37 37 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 38 38 H 1.09004 * 117.49681 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0014 11 6 5.5517 -2.6364 0.0014 12 1 5.9150 -2.0478 -0.8409 13 7 6.0413 -2.0498 1.2561 14 6 6.0540 -4.0519 -0.1210 15 8 6.4281 -4.6501 0.8654 16 7 6.0876 -4.6531 -1.3268 17 6 6.5765 -6.0290 -1.4459 18 6 6.5109 -6.4686 -2.9099 19 6 7.0209 -7.9057 -3.0342 20 6 6.0287 -8.9694 -3.5087 21 6 7.1434 -8.4926 -4.4419 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6795 0.8895 24 1 3.8746 -0.6808 -0.8905 25 1 3.6580 -3.1513 -0.8879 26 1 3.6587 -3.1493 0.8921 27 1 5.7718 -1.0804 1.3315 28 1 5.7177 -2.5781 2.0526 29 1 5.7882 -4.1748 -2.1157 30 1 5.9558 -6.6889 -0.8398 31 1 7.6082 -6.0794 -1.0977 32 1 7.1319 -5.8086 -3.5157 33 1 5.4794 -6.4181 -3.2585 34 1 7.7660 -8.2056 -2.2973 35 1 6.1210 -9.9690 -3.0838 36 1 5.0122 -8.6455 -3.7319 37 1 6.8603 -7.8549 -5.2794 38 1 7.9692 -9.1785 -4.6311 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424120376.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:43 Heat of formation + Delta-G solvation = -60.593499 kcal Electronic energy + Delta-G solvation = -16750.294046 eV Core-core repulsion = 14012.445257 eV Total energy + Delta-G solvation = -2737.848789 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.92865 -38.64016 -37.16644 -35.88738 -34.80662 -32.07533 -31.40732 -28.39491 -25.87323 -23.90973 -23.17830 -22.21925 -21.70140 -20.82139 -19.11487 -18.30459 -17.23071 -16.72869 -16.31300 -16.17240 -15.91966 -15.59136 -15.25912 -14.98804 -14.68222 -14.34528 -14.25091 -13.51360 -13.11108 -12.99735 -12.75817 -12.63196 -12.35359 -12.27898 -12.08884 -11.85158 -11.68387 -11.40692 -11.20200 -10.81639 -10.77132 -10.73749 -10.09739 -9.65405 -8.29782 -6.35515 1.38626 1.41135 1.52241 1.61859 2.15041 2.36718 2.91811 3.05882 3.71764 3.73484 3.77364 3.99377 4.03266 4.10223 4.19860 4.25682 4.33934 4.55083 4.60028 4.67119 4.73695 4.82229 4.94865 4.99765 5.07409 5.09949 5.28710 5.36498 5.38147 5.45248 5.48303 5.62953 6.06739 6.25263 6.48770 6.55651 6.73231 7.24904 7.29457 8.87079 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029845 B = 0.004178 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.940981 B = 6700.840462 C = 7256.341980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.238 1.238 7 C -0.536 4.536 8 H 0.026 0.974 9 C -0.006 4.006 10 C -0.118 4.118 11 C 0.081 3.919 12 H 0.122 0.878 13 N -0.831 5.831 14 C 0.522 3.478 15 O -0.576 6.576 16 N -0.720 5.720 17 C 0.124 3.876 18 C -0.090 4.090 19 C -0.160 4.160 20 C -0.188 4.188 21 C -0.172 4.172 22 H 0.266 0.734 23 H 0.025 0.975 24 H 0.032 0.968 25 H 0.065 0.935 26 H 0.040 0.960 27 H 0.355 0.645 28 H 0.344 0.656 29 H 0.415 0.585 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.119 -11.238 -8.974 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.161 1.161 7 C -0.574 4.574 8 H 0.044 0.956 9 C -0.044 4.044 10 C -0.158 4.158 11 C -0.035 4.035 12 H 0.140 0.860 13 N -0.363 5.363 14 C 0.308 3.692 15 O -0.455 6.455 16 N -0.373 5.373 17 C 0.001 3.999 18 C -0.128 4.128 19 C -0.179 4.179 20 C -0.225 4.225 21 C -0.209 4.209 22 H 0.075 0.925 23 H 0.043 0.957 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.170 0.830 28 H 0.157 0.843 29 H 0.251 0.749 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 16.990 -11.736 -8.558 22.352 hybrid contribution -1.668 0.843 0.101 1.872 sum 15.321 -10.893 -8.457 20.613 Atomic orbital electron populations 1.70082 1.08579 1.28259 1.52501 1.26100 0.95631 1.03848 0.93946 0.85586 0.79658 0.77593 0.79362 1.18886 1.21631 1.16092 1.21453 0.92269 0.92901 1.50748 0.95610 1.19508 0.93745 0.93829 0.97298 1.22023 0.93525 0.98736 1.01555 1.21456 0.93260 0.92381 0.96373 0.86024 1.58758 1.66510 1.07644 1.03375 1.20809 0.76630 0.88675 0.83051 1.90626 1.49334 1.67006 1.38485 1.45919 1.66028 1.15806 1.09556 1.21327 0.99118 0.81593 0.97896 1.21296 1.02385 0.95084 0.94043 1.22185 1.03045 0.93626 0.99026 1.23133 0.95622 0.99291 1.04413 1.23048 1.01163 1.03652 0.93050 0.92518 0.95662 0.94989 0.91639 0.94153 0.83021 0.84264 0.74874 0.93013 0.92056 0.89543 0.90691 0.87554 0.88462 0.88794 0.88159 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 2 C 0.00 0.08 5.47 84.65 0.46 0.54 16 3 Si 0.96 42.34 27.47 68.60 1.88 44.23 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 7 C -0.54 -30.02 9.66 25.60 0.25 -29.77 16 8 H 0.03 1.62 7.99 -2.91 -0.02 1.59 16 9 C -0.01 -0.27 3.81 29.85 0.11 -0.16 16 10 C -0.12 -4.33 4.78 30.59 0.15 -4.18 16 11 C 0.08 2.42 3.21 44.17 0.14 2.56 16 12 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 13 N -0.83 -25.57 8.94 -171.81 -1.54 -27.11 16 14 C 0.52 16.17 7.08 87.66 0.62 16.79 16 15 O -0.58 -22.10 16.25 -3.02 -0.05 -22.15 16 16 N -0.72 -16.66 5.56 -463.07 -2.57 -19.24 16 17 C 0.12 2.58 5.63 86.38 0.49 3.07 16 18 C -0.09 -1.32 5.61 30.59 0.17 -1.15 16 19 C -0.16 -2.25 5.73 -10.79 -0.06 -2.31 16 20 C -0.19 -2.56 10.18 30.59 0.31 -2.25 16 21 C -0.17 -2.05 10.25 30.60 0.31 -1.74 16 22 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 23 H 0.03 1.04 5.92 -2.39 -0.01 1.03 16 24 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 25 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.35 10.25 7.55 -89.69 -0.68 9.57 16 28 H 0.34 11.19 8.58 -89.69 -0.77 10.43 16 29 H 0.41 7.36 8.47 -92.71 -0.79 6.58 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.08 7.88 -2.38 -0.02 1.06 16 34 H 0.11 1.51 8.08 -2.39 -0.02 1.49 16 35 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.31 8.03 -2.39 -0.02 1.29 16 37 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -70.22 315.99 -0.25 -70.46 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -1.23 Total: 31.40 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 2.95 Total: -18.60 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -3.81 Total: -105.33 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.05 Total: -22.15 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.23 kcal Total: -70.22 -0.25 -70.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424120376.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.870 kcal (2) G-P(sol) polarization free energy of solvation -70.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds