Wall clock time and date at job start Sun Mar 29 2020 22:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.47092 * 125.55673 * 2 1 4 4 C 1.54094 * 103.90525 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.52016 * 241.44127 * 4 3 2 6 6 C 1.53003 * 110.51692 * 118.70712 * 4 3 2 7 7 N 1.46503 * 109.46867 * 179.97438 * 6 4 3 8 8 C 1.36939 * 120.00384 * 270.00293 * 7 6 4 9 9 H 1.07994 * 120.00119 * 140.89945 * 8 7 6 10 10 C 1.38810 * 119.99509 * 320.90037 * 8 7 6 11 11 N 1.31622 * 119.99671 * 156.76840 * 10 8 7 12 12 Si 1.86804 * 120.00454 * 336.76374 * 10 8 7 13 13 H 1.48497 * 109.47108 * 92.08131 * 12 10 8 14 14 H 1.48494 * 109.47478 * 212.08748 * 12 10 8 15 15 H 1.48502 * 109.46628 * 332.08720 * 12 10 8 16 16 C 1.46498 * 119.99937 * 89.99784 * 7 6 4 17 17 C 1.53002 * 117.50177 * 184.08964 * 16 7 6 18 18 C 1.53000 * 117.49842 * 115.46631 * 16 7 6 19 19 O 1.46034 * 103.84271 * 0.11564 * 4 3 2 20 20 C 1.33769 * 109.51385 * 359.88115 * 19 4 3 21 21 O 1.21510 * 123.07549 * 180.02562 * 20 19 4 22 22 H 1.09000 * 109.47141 * 89.99842 * 1 2 3 23 23 H 1.08998 * 109.46854 * 209.99881 * 1 2 3 24 24 H 1.09002 * 109.47178 * 329.99831 * 1 2 3 25 25 H 1.08997 * 110.56754 * 298.59498 * 3 2 1 26 26 H 1.09000 * 110.56367 * 61.30640 * 3 2 1 27 27 H 1.08996 * 109.47173 * 300.00007 * 6 4 3 28 28 H 1.09000 * 109.47362 * 60.00255 * 6 4 3 29 29 H 0.97009 * 119.99766 * 179.97438 * 11 10 8 30 30 H 1.09006 * 115.54997 * 329.80657 * 16 7 6 31 31 H 1.08997 * 117.49471 * 0.02562 * 17 16 7 32 32 H 1.09003 * 117.49642 * 145.02220 * 17 16 7 33 33 H 1.09000 * 117.50272 * 214.98078 * 18 16 7 34 34 H 1.08999 * 117.49948 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3204 1.1967 0.0000 4 6 3.7526 0.6281 0.0007 5 1 4.2875 0.9410 0.8974 6 6 4.5055 1.0697 -1.2560 7 7 5.8624 0.5178 -1.2316 8 6 6.8797 1.2269 -0.6508 9 1 7.6310 0.7147 -0.0682 10 6 6.9451 2.6042 -0.8109 11 7 7.5967 3.3384 0.0660 12 14 6.1086 3.4157 -2.2707 13 1 4.7310 3.8192 -1.8905 14 1 6.8811 4.6163 -2.6795 15 1 6.0487 2.4565 -3.4029 16 6 6.1309 -0.7929 -1.8284 17 6 7.5460 -1.3572 -1.6869 18 6 7.0609 -0.8392 -3.0424 19 8 3.5542 -0.8187 -0.0019 20 6 2.2444 -1.0901 -0.0012 21 8 1.8016 -2.2216 -0.0024 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 2.1457 1.7922 -0.8960 26 1 2.1444 1.7931 0.8952 27 1 3.9811 0.7068 -2.1400 28 1 4.5569 2.1581 -1.2852 29 1 7.6427 4.3009 -0.0461 30 1 5.3017 -1.5001 -1.8025 31 1 8.2770 -0.7533 -1.1493 32 1 7.6481 -2.4358 -1.5676 33 1 6.8441 -1.5770 -3.8148 34 1 7.4727 0.1056 -3.3973 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496829593.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:40 Heat of formation + Delta-G solvation = -9.085721 kcal Electronic energy + Delta-G solvation = -17993.095003 eV Core-core repulsion = 15121.646664 eV Total energy + Delta-G solvation = -2871.448339 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.19504 -37.50069 -36.65153 -35.23155 -33.72804 -31.76459 -29.86263 -27.42939 -25.35400 -23.89243 -22.27979 -21.42241 -20.70252 -19.70141 -17.24488 -17.04199 -16.51677 -15.93712 -15.44918 -15.38291 -14.59235 -13.95973 -13.82315 -13.66370 -13.47909 -12.71068 -12.56463 -12.43980 -12.32393 -12.00380 -11.65976 -11.06938 -10.87636 -10.53069 -10.43404 -10.26489 -10.15012 -9.90057 -9.57313 -9.38518 -8.83745 -8.64319 -6.85025 -6.16590 -3.59330 2.71358 3.01415 3.10055 3.33646 3.40622 3.82593 4.30524 4.37698 4.75276 4.82164 4.90344 5.00139 5.16631 5.34486 5.39069 5.53037 5.59408 5.74642 5.87483 5.96268 6.01267 6.09316 6.19627 6.38686 6.45850 6.50740 6.55671 6.94361 7.12353 7.66481 7.89809 8.27362 8.29303 8.83105 9.53295 9.94908 10.98134 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.023631 B = 0.009287 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.582145 B = 3014.283966 C = 3710.138483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.640 5.640 3 C 0.068 3.932 4 C 0.054 3.946 5 H 0.123 0.877 6 C 0.134 3.866 7 N -0.566 5.566 8 C -0.273 4.273 9 H 0.086 0.914 10 C 0.040 3.960 11 N -0.891 5.891 12 Si 0.866 3.134 13 H -0.283 1.283 14 H -0.297 1.297 15 H -0.265 1.265 16 C 0.123 3.877 17 C -0.186 4.186 18 C -0.224 4.224 19 O -0.310 6.310 20 C 0.639 3.361 21 O -0.540 6.540 22 H 0.056 0.944 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.266 0.734 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.244 -1.601 -1.624 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.389 5.389 3 C -0.056 4.056 4 C -0.004 4.004 5 H 0.141 0.859 6 C 0.007 3.993 7 N -0.283 5.283 8 C -0.401 4.401 9 H 0.104 0.896 10 C -0.162 4.162 11 N -0.531 5.531 12 Si 0.695 3.305 13 H -0.211 1.211 14 H -0.224 1.224 15 H -0.189 1.189 16 C 0.015 3.985 17 C -0.224 4.224 18 C -0.265 4.265 19 O -0.219 6.219 20 C 0.394 3.606 21 O -0.427 6.427 22 H 0.075 0.925 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.180 -2.149 -1.557 11.490 hybrid contribution -0.398 0.903 -0.811 1.277 sum -11.578 -1.246 -2.368 11.884 Atomic orbital electron populations 1.21385 0.75730 1.03184 1.01951 1.47972 1.07173 1.06435 1.77316 1.22941 0.89835 0.88832 1.04000 1.25094 0.94222 0.75384 1.05725 0.85903 1.21631 0.86090 0.98696 0.92838 1.43551 1.02959 1.17272 1.64547 1.18799 1.06306 0.89315 1.25674 0.89642 1.25536 0.97098 0.96585 0.96949 1.69873 1.44020 1.05726 1.33448 0.87152 0.78057 0.79067 0.86241 1.21134 1.22439 1.18931 1.21220 0.92031 0.88926 0.96347 1.23048 0.99921 0.98982 1.00488 1.23375 1.09242 1.02117 0.91746 1.87437 1.21535 1.27031 1.85905 1.18710 0.80826 0.85195 0.75887 1.90973 1.74400 1.20841 1.56462 0.92530 0.90439 0.90788 0.89408 0.89288 0.92860 0.90070 0.92441 0.88483 0.87914 0.90379 0.90768 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.20 11.04 59.85 0.66 1.86 16 2 N -0.64 -9.08 3.36 -186.76 -0.63 -9.70 16 3 C 0.07 0.89 7.33 -3.15 -0.02 0.87 16 4 C 0.05 0.93 4.13 -26.16 -0.11 0.82 16 5 H 0.12 2.22 8.14 -51.93 -0.42 1.80 16 6 C 0.13 2.63 4.12 -4.04 -0.02 2.61 16 7 N -0.57 -12.77 2.36 -165.66 -0.39 -13.16 16 8 C -0.27 -7.07 8.93 -15.06 -0.13 -7.21 16 9 H 0.09 2.44 6.85 -52.49 -0.36 2.08 16 10 C 0.04 1.06 5.27 -17.43 -0.09 0.97 16 11 N -0.89 -25.25 13.97 55.49 0.78 -24.47 16 12 Si 0.87 20.14 25.32 -169.99 -4.30 15.84 16 13 H -0.28 -6.07 6.52 56.52 0.37 -5.70 16 14 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 16 C 0.12 2.55 6.33 -67.93 -0.43 2.12 16 17 C -0.19 -3.67 9.80 -26.73 -0.26 -3.94 16 18 C -0.22 -4.38 10.34 -26.73 -0.28 -4.65 16 19 O -0.31 -6.01 10.08 -37.83 -0.38 -6.39 16 20 C 0.64 11.76 8.85 53.71 0.48 12.23 16 21 O -0.54 -11.43 17.54 -19.12 -0.34 -11.77 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.09 1.02 7.73 -51.93 -0.40 0.62 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.97 8.07 -51.93 -0.42 0.55 16 28 H 0.08 1.65 3.46 -51.93 -0.18 1.47 16 29 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.10 1.96 7.66 -51.93 -0.40 1.56 16 31 H 0.10 2.23 6.44 -51.93 -0.33 1.89 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 282.97 15.07 4.26 4.26 Total: -1.00 -30.96 282.97 -5.84 -36.80 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -4.63 Total: 2.91 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -0.21 Total: 5.68 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.24 Total: -47.34 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.72 Total: -18.16 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.30 Total: 15.84 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.96 -5.84 -36.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496829593.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.717 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds